Alexei V. Korennykh, Ph.D. - Publications

Affiliations: 
2005 University of Chicago, Chicago, IL 
Area:
chemistry and biochemistryof nucleic acids

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Prangley E, Korennykh A. 2-5A-Mediated decay (2-5AMD): from antiviral defense to control of host RNA. Critical Reviews in Biochemistry and Molecular Biology. 1-15. PMID 36939319 DOI: 10.1080/10409238.2023.2181308  0.374
2021 Chitrakar A, Solorio-Kirpichyan K, Prangley E, Rath S, Du J, Korennykh A. Introns encode dsRNAs undetected by RIG-I/MDA5/interferons and sensed via RNase L. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34772806 DOI: 10.1073/pnas.2102134118  0.341
2019 Rath S, Prangley E, Donovan J, Demarest K, Wingreen NS, Meir Y, Korennykh A. Concerted 2-5A-Mediated mRNA Decay and Transcription Reprogram Protein Synthesis in the dsRNA Response. Molecular Cell. PMID 31494033 DOI: 10.1016/J.Molcel.2019.07.027  0.455
2019 Estrella MA, Du J, Chen L, Rath S, Prangley E, Chitrakar A, Aoki T, Schedl P, Rabinowitz J, Korennykh A. The metabolites NADP and NADPH are the targets of the circadian protein Nocturnin (Curled). Nature Communications. 10: 2367. PMID 31147539 DOI: 10.1038/S41467-019-10125-Z  0.343
2019 Chitrakar A, Rath S, Donovan J, Demarest K, Li Y, Sridhar RR, Weiss SR, Kotenko SV, Wingreen NS, Korennykh A. Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L. Proceedings of the National Academy of Sciences of the United States of America. PMID 30655338 DOI: 10.1073/Pnas.1818363116  0.401
2018 Estrella MA, Du J, Korennykh A. Crystal Structure of Human Nocturnin Catalytic Domain. Scientific Reports. 8: 16294. PMID 30389976 DOI: 10.1038/S41598-018-34615-0  0.426
2017 Oakes SR, Gallego-Ortega D, Stanford PM, Junankar S, Au WWY, Kikhtyak Z, von Korff A, Sergio CM, Law AMK, Castillo LE, Allerdice SL, Young AIJ, Piggin C, Whittle B, Bertram E, ... ... Korennykh A, et al. A mutation in the viral sensor 2'-5'-oligoadenylate synthetase 2 causes failure of lactation. Plos Genetics. 13: e1007072. PMID 29117179 DOI: 10.1371/Journal.Pgen.1007072  0.373
2017 Donovan J, Rath S, Kolet-Mandrikov D, Korennykh A. Rapid RNase L-driven arrest of protein synthesis in the dsRNA response without degradation of translation machinery. Rna (New York, N.Y.). 23: 1660-1671. PMID 28808124 DOI: 10.1261/Rna.062000.117  0.48
2017 Li Y, Banerjee S, Goldstein SA, Dong B, Gaughan C, Rath S, Donovan J, Korennykh AV, Silverman RH, Weiss SR. Ribonuclease L mediates the cell-lethal phenotype of the double-stranded RNA editing enzyme ADAR1 in a human cell line. Elife. 6. PMID 28362255 DOI: 10.7554/Elife.25687  0.4
2017 Li Y, Banerjee S, Goldstein SA, Dong B, Gaughan C, Rath S, Donovan J, Korennykh A, Silverman RH, Weiss SR. Author response: Ribonuclease L mediates the cell-lethal phenotype of double-stranded RNA editing enzyme ADAR1 deficiency in a human cell line Elife. DOI: 10.7554/Elife.25687.026  0.394
2015 Rath S, Donovan J, Whitney G, Chitrakar A, Wang W, Korennykh A. Human RNase L tunes gene expression by selectively destabilizing the microRNA-regulated transcriptome. Proceedings of the National Academy of Sciences of the United States of America. PMID 26668391 DOI: 10.1073/Pnas.1513034112  0.337
2015 Mendez AS, Alfaro J, Morales-Soto MA, Dar AC, McCullagh E, Gotthardt K, Li H, Acosta-Alvear D, Sidrauski C, Korennykh AV, Bernales S, Shokat KM, Walter P. Endoplasmic reticulum stress-independent activation of unfolded protein response kinases by a small molecule ATP-mimic. Elife. 4. PMID 25986605 DOI: 10.7554/Elife.05434  0.376
2015 Donovan J, Whitney G, Rath S, Korennykh A. Structural mechanism of sensing long dsRNA via a noncatalytic domain in human oligoadenylate synthetase 3. Proceedings of the National Academy of Sciences of the United States of America. 112: 3949-54. PMID 25775560 DOI: 10.1073/Pnas.1419409112  0.451
2015 Mendez AS, Alfaro J, Morales-Soto MA, Dar AC, McCullagh E, Gotthardt K, Li H, Acosta-Alvear D, Sidrauski C, Korennykh AV, Bernales S, Shokat KM, Walter P. Author response: Endoplasmic reticulum stress-independent activation of unfolded protein response kinases by a small molecule ATP-mimic Elife. DOI: 10.7554/Elife.05434.022  0.328
2014 Han Y, Donovan J, Rath S, Whitney G, Chitrakar A, Korennykh A. Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response. Science (New York, N.Y.). 343: 1244-8. PMID 24578532 DOI: 10.1126/Science.1249845  0.476
2013 Donovan J, Dufner M, Korennykh A. Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1. Proceedings of the National Academy of Sciences of the United States of America. 110: 1652-7. PMID 23319625 DOI: 10.1073/Pnas.1218528110  0.503
2012 Han Y, Whitney G, Donovan J, Korennykh A. Innate immune messenger 2-5A tethers human RNase L into active high-order complexes. Cell Reports. 2: 902-13. PMID 23084743 DOI: 10.1016/J.Celrep.2012.09.004  0.364
2012 Korennykh A, Walter P. Structural basis of the unfolded protein response. Annual Review of Cell and Developmental Biology. 28: 251-77. PMID 23057742 DOI: 10.1146/Annurev-Cellbio-101011-155826  0.351
2011 Korennykh AV, Egea PF, Korostelev AA, Finer-Moore J, Stroud RM, Zhang C, Shokat KM, Walter P. Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1. Bmc Biology. 9: 48. PMID 21729334 DOI: 10.1186/1741-7007-9-48  0.387
2011 Korennykh AV, Korostelev AA, Egea PF, Finer-Moore J, Stroud RM, Zhang C, Shokat KM, Walter P. Structural and functional basis for RNA cleavage by Ire1. Bmc Biology. 9: 47. PMID 21729333 DOI: 10.1186/1741-7007-9-47  0.504
2011 Rubio C, Pincus D, Korennykh A, Schuck S, El-Samad H, Walter P. Homeostatic adaptation to endoplasmic reticulum stress depends on Ire1 kinase activity. The Journal of Cell Biology. 193: 171-84. PMID 21444684 DOI: 10.1083/Jcb.201007077  0.413
2011 Plantinga MJ, Korennykh AV, Piccirilli JA, Correll CC. The ribotoxin restrictocin recognizes its RNA substrate by selective engagement of active site residues. Biochemistry. 50: 3004-13. PMID 21417210 DOI: 10.1021/Bi1018336  0.638
2010 Li H, Korennykh AV, Behrman SL, Walter P. Mammalian endoplasmic reticulum stress sensor IRE1 signals by dynamic clustering. Proceedings of the National Academy of Sciences of the United States of America. 107: 16113-8. PMID 20798350 DOI: 10.1073/Pnas.1010580107  0.376
2009 Aragón T, van Anken E, Pincus D, Serafimova IM, Korennykh AV, Rubio CA, Walter P. Messenger RNA targeting to endoplasmic reticulum stress signalling sites. Nature. 457: 736-40. PMID 19079237 DOI: 10.1038/Nature07641  0.437
2009 Korennykh AV, Egea PF, Korostelev AA, Finer-Moore J, Zhang C, Shokat KM, Stroud RM, Walter P. The unfolded protein response signals through high-order assembly of Ire1. Nature. 457: 687-93. PMID 19079236 DOI: 10.1038/Nature07661  0.47
2008 Plantinga MJ, Korennykh AV, Piccirilli JA, Correll CC. Electrostatic interactions guide the active site face of a structure-specific ribonuclease to its RNA substrate. Biochemistry. 47: 8912-8. PMID 18672906 DOI: 10.1021/Bi800592G  0.621
2007 Korennykh AV, Plantinga MJ, Correll CC, Piccirilli JA. Linkage between substrate recognition and catalysis during cleavage of sarcin/ricin loop RNA by restrictocin. Biochemistry. 46: 12744-56. PMID 17929942 DOI: 10.1021/Bi700931Y  0.611
2007 Korennykh AV, Correll CC, Piccirilli JA. Evidence for the importance of electrostatics in the function of two distinct families of ribosome inactivating toxins. Rna (New York, N.Y.). 13: 1391-6. PMID 17626843 DOI: 10.1261/Rna.619707  0.565
2006 Korennykh AV, Piccirilli JA, Correll CC. The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins. Nature Structural & Molecular Biology. 13: 436-43. PMID 16604082 DOI: 10.1038/Nsmb1082  0.607
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