David A. Carlson, Ph.D. - Related publications

2010 Chemistry Duke University, Durham, NC 
biocatalysis/applied enzymology, ligand binding and the activity of water, and the synthesis of novel donors of nitric oxide
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kong B, Zhu Z, Li H, Hong Q, Wang C, Ma Y, Zheng W, Jiang F, Zhang Z, Ran T, Bian Y, Yang N, Lu T, Zhu J, Tang W, et al. Discovery of 1-(5-(1H-benzo[d]imidazole-2-yl)-2,4-dimethyl-1H-pyrrol-3-yl)ethan-1-one derivatives as novel and potent bromodomain and extra-terminal (BET) inhibitors with anticancer efficacy. European Journal of Medicinal Chemistry. 227: 113953. PMID 34731760 DOI: 10.1016/j.ejmech.2021.113953   
2021 Alhadrami HA, Alkhatabi H, Abduljabbar FH, Abdelmohsen UR, Sayed AM. Anticancer Potential of Green Synthesized Silver Nanoparticles of the Soft Coral Supported by Network Pharmacology and In Silico Analyses. Pharmaceutics. 13. PMID 34834261 DOI: 10.3390/pharmaceutics13111846   
2021 Liu Y, Tian F, Shi S, Deng Y, Zheng P. Enzymatic Protein-Protein Conjugation through Internal Site Verified at the Single-Molecule Level. The Journal of Physical Chemistry Letters. 10914-10919. PMID 34734720 DOI: 10.1021/acs.jpclett.1c02767   
2021 Sen S, Sultana N, Shaffer SA, Thompson PR. Proximity-Dependent Labeling of Cysteines. Journal of the American Chemical Society. PMID 34762412 DOI: 10.1021/jacs.1c07069   
2021 Norton D, Bonnette WG, Callahan JF, Carr MG, Griffiths-Jones CM, Heightman TD, Kerns JK, Nie H, Rich SJ, Richardson C, Rumsey W, Sanchez Y, Verdonk ML, Willems HMG, Wixted WE, et al. Fragment-Guided Discovery of Pyrazole Carboxylic Acid Inhibitors of the Kelch-like ECH-Associated Protein 1: Nuclear Factor Erythroid 2 Related Factor 2 (KEAP1:NRF2) Protein-Protein Interaction. Journal of Medicinal Chemistry. PMID 34705450 DOI: 10.1021/acs.jmedchem.1c01351   
2021 Wang W, Zhang Y, Zhao H, Zhuang X, Wang H, He K, Xu W, Kang Y, Chen S, Zeng S, Qian L. Real-time imaging of cell-surface proteins with antibody-based fluorogenic probes. Chemical Science. 12: 13477-13482. PMID 34777767 DOI: 10.1039/d1sc03065e   
2021 Math RK, Bharatham N, Javaregowda PK, Yun HD. Role of Cel5H protein surface amino acids in binding with clay minerals and measurements of its forces. Applied Microscopy. 51: 17. PMID 34762191 DOI: 10.1186/s42649-021-00066-7   
2021 Fino R, Lenhart D, Kalel VC, Softley CA, Napolitano V, Byrne R, Schliebs W, Dawidowski M, Erdmann R, Sattler M, Schneider G, Plettenburg O, Popowicz GM. Computer-Aided Design and Synthesis of a New Class of PEX14 Inhibitors: Substituted 2,3,4,5-Tetrahydrobenzo[F][1,4]oxazepines as Potential New Trypanocidal Agents. Journal of Chemical Information and Modeling. PMID 34597510 DOI: 10.1021/acs.jcim.1c00472   
2021 Reutershan MH, Machacek MR, Altman MD, Bogen S, Cai M, Cammarano C, Chen D, Christopher M, Cryan J, Daublain P, Fradera X, Geda P, Goldenblatt P, Hill AD, Kemper RA, et al. Discovery of : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction. Journal of Medicinal Chemistry. PMID 34714078 DOI: 10.1021/acs.jmedchem.1c01524   
2021 Hung SW, Liang B, Gao Y, Zhang R, Tan Z, Zhang T, Chung PWJ, Chan TH, Wang CC. An , and Combined Approach to Identify NMNATs as Potential Protein Targets of ProEGCG for Treatment of Endometriosis. Frontiers in Pharmacology. 12: 714790. PMID 34721014 DOI: 10.3389/fphar.2021.714790   
2021 Panyain N, Godinat A, Thawani AR, Lachiondo-Ortega S, Mason K, Elkhalifa S, Smith LM, Harrigan JA, Tate EW. Activity-based protein profiling reveals deubiquitinase and aldehyde dehydrogenase targets of a cyanopyrrolidine probe. Rsc Medicinal Chemistry. 12: 1935-1943. PMID 34820624 DOI: 10.1039/d1md00218j   
2021 Lin L, Lin K, Wu X, Liu J, Cheng Y, Xu LY, Li EM, Dong G. Potential Inhibitors of Fascin From A Database of Marine Natural Products: A Virtual Screening and Molecular Dynamics Study. Frontiers in Chemistry. 9: 719949. PMID 34692638 DOI: 10.3389/fchem.2021.719949   
2021 Zheng X, Zheng T, Liao Y, Luo L. Identification of Potential Inhibitors of MurD Enzyme of from a Marine Natural Product Library. Molecules (Basel, Switzerland). 26. PMID 34770835 DOI: 10.3390/molecules26216426   
2021 Wu J, Hu B, Lu S, Duan R, Deng H, Li L, He L, Zhao Y, Wang J, Yu Z. Identification of raloxifene as a novel α-glucosidase inhibitor using a systematic drug repurposing approach in combination with cross molecular docking-based virtual screening and experimental verification. Carbohydrate Research. 511: 108478. PMID 34801925 DOI: 10.1016/j.carres.2021.108478   
2021 Nagarajan M, Maadurshni GB, Manivannan J. Systems toxicology approach explores target-pathway relationship and adverse health impacts of ubiquitous environmental pollutant bisphenol A. Journal of Toxicology and Environmental Health. Part A. 1-13. PMID 34706627 DOI: 10.1080/15287394.2021.1994492   
2021 Watroly MN, Sekar M, Fuloria S, Gan SH, Jeyabalan S, Wu YS, Subramaniyan V, Sathasivam KV, Ravi S, Mat Rani NNI, Lum PT, Vaijanathappa J, Meenakshi DU, Mani S, Fuloria NK. Chemistry, Biosynthesis, Physicochemical and Biological Properties of Rubiadin: A Promising Natural Anthraquinone for New Drug Discovery and Development. Drug Design, Development and Therapy. 15: 4527-4549. PMID 34764636 DOI: 10.2147/DDDT.S338548   
2021 Rodrigues CHM, Pires DEV, Ascher DB. pdCSM-PPI: Using Graph-Based Signatures to Identify Protein-Protein Interaction Inhibitors. Journal of Chemical Information and Modeling. 61: 5438-5445. PMID 34719929 DOI: 10.1021/acs.jcim.1c01135   
2021 Avolio E, Carrabba M, Milligan R, Kavanagh Williamson M, Beltrami A, Gupta K, Elvers KT, Gamez M, Foster R, Gillespie K, Hamilton F, Arnold D, Berger I, Davidson A, Hill DJ, et al. The SARS-CoV-2 Spike protein disrupts human cardiac pericytes function through CD147-receptor-mediated signalling: a potential non-infective mechanism of COVID-19 microvascular disease. Clinical Science (London, England : 1979). PMID 34807265 DOI: 10.1042/CS20210735   
2021 Hwang IY, Oh CK, Choi YK, Yun N, Oh YJ. RNF166 plays a dual role for Lys63-linked ubiquitination and sumoylation of its target proteins. Journal of Neural Transmission (Vienna, Austria : 1996). PMID 34837535 DOI: 10.1007/s00702-021-02442-9   
2021 Ben Abla A, Boeuf G, Elmarjou A, Dridi C, Poirier F, Changotade S, Lutomski D, Elm'selmi A. Engineering of Bio-Adhesive Ligand Containing Recombinant RGD and PHSRN Fibronectin Cell-Binding Domains in Fusion with a Colored Multi Affinity Tag: Simple Approach for Fragment Study from Expression to Adsorption. International Journal of Molecular Sciences. 22. PMID 34298982 DOI: 10.3390/ijms22147362   
2021 Wullich SC, Wijma HJ, Janssen DB, Fetzner S. Stabilizing AqdC, a Pseudomonas Quinolone Signal-Cleaving Dioxygenase from Mycobacteria, by FRESCO-Based Protein Engineering. Chembiochem : a European Journal of Chemical Biology. 22: 733-742. PMID 33058333 DOI: 10.1002/cbic.202000641   
2021 George A, Indhu M, Ashokraj S, Shanmugam G, Ganesan P, Kamini NR, Ayyadurai N. Genetically encoded dihydroxyphenylalanine coupled with tyrosinase for strain promoted labeling. Bioorganic & Medicinal Chemistry. 50: 116460. PMID 34757293 DOI: 10.1016/j.bmc.2021.116460   
2021 Sohtome Y, Shimazu T, Shinkai Y, Sodeoka M. Propargylic -adenosyl-l-selenomethionine: A Chemical Tool for Methylome Analysis. Accounts of Chemical Research. 54: 3818-3827. PMID 34612032 DOI: 10.1021/acs.accounts.1c00395   
2021 Karthigeyan KP, Zhang L, Loiselle DR, Haystead TAJ, Bhat M, Yount JS, Kwiek JJ. A bioorthogonal chemical reporter for fatty acid synthase-dependent protein acylation. The Journal of Biological Chemistry. 101272. PMID 34606827 DOI: 10.1016/j.jbc.2021.101272   
2021 Mamidala E, Davella R, Praveen Kumar M, Swamy S, Abhiav M, Ali Kaimkhani Z, Al-Ghanim KA, Mahboob S. Prediction of Mozenavir as a potential drug for SARS-CoV-2 infection via Binding Multiple Drug Targets. Saudi Journal of Biological Sciences. PMID 34690521 DOI: 10.1016/j.sjbs.2021.10.023   
2021 Pujari I, Sengupta R, Babu VS. Docking and ADMET studies for investigating the anticancer potency of Moscatilin on APC10/DOC1 and PKM2 against five clinical drugs. Journal, Genetic Engineering & Biotechnology. 19: 161. PMID 34665359 DOI: 10.1186/s43141-021-00256-6   
2021 Karale A, Lokhande KB, Shende N, Swamy KV, Dhere R, Nawani N, Mallya A. Transferrin binding protein-B from C as a novel carrier protein in glycoconjugate preparation: an approach. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 34726113 DOI: 10.1080/07391102.2021.1994878   
2021 Cao L, Wang L. New covalent bonding ability for proteins. Protein Science : a Publication of the Protein Society. PMID 34761448 DOI: 10.1002/pro.4228   
2021 Javed T, Raja SA, Rehman KU, Khalid S, Khalid N, Riaz S. In silico bimolecular characterization of anticancer phytochemicals from Fagonia indica. Pakistan Journal of Pharmaceutical Sciences. 34: 883-889. PMID 34602410   
2021 Soini L, Redhead M, Westwood M, Leysen S, Davis J, Ottmann C. Identification of molecular glues of the SLP76/14-3-3 protein-protein interaction. Rsc Medicinal Chemistry. 12: 1555-1564. PMID 34667951 DOI: 10.1039/d1md00172h   
2021 Zhao M, Ma Q, Zhao Z, Guan X, Bai Y. Periodontal ligament fibroblast-derived exosomes induced by compressive force promote macrophage M1 polarization via Yes-associated protein. Archives of Oral Biology. 132: 105263. PMID 34688132 DOI: 10.1016/j.archoralbio.2021.105263   
2021 Xue X, Kang JB, Yang X, Li N, Chang L, Ji J, Meng XK, Zhang HQ, Zhong Y, Yu SP, Wu WY, Wang XL, Li NG, Sun SL. An efficient strategy for digging protein-protein interactions for rational drug design - A case study with HIF-1α/VHL. European Journal of Medicinal Chemistry. 227: 113871. PMID 34638033 DOI: 10.1016/j.ejmech.2021.113871   
2021 Ryan A, Hammond GRV, Deiters A. Optical Control of Phosphoinositide Binding: Rapid Activation of Subcellular Protein Translocation and Cell Signaling. Acs Synthetic Biology. 10: 2886-2895. PMID 34748306 DOI: 10.1021/acssynbio.1c00328   
2021 Liu FJ, Shen SK, Chen YW, Dong XP, Han JR, Xie HJ, Ding ZW. Quantitative proteomics reveals the relationship between protein changes and off-flavor in Russian sturgeon (Acipenser gueldenstaedti) fillets treated with low temperature vacuum heating. Food Chemistry. 370: 131371. PMID 34656021 DOI: 10.1016/j.foodchem.2021.131371   
2021 Balmeh N, Mahmoudi S, Fard NA. Manipulated bio antimicrobial peptides from probiotic bacteria as proposed drugs for COVID-19 disease. Informatics in Medicine Unlocked. 23: 100515. PMID 33521241 DOI: 10.1016/j.imu.2021.100515   
2021 Balsollier C, Pieters RJ, Anderluh M. Overview of the Assays to Probe -Linked β--Acetylglucosamine Transferase Binding and Activity. Molecules (Basel, Switzerland). 26. PMID 33669256 DOI: 10.3390/molecules26041037   
2021 Shafique QUA, Rehman HM, Zaheer T, Tahir RA, Bhinder MA, Gul R, Saleem M. A Computational Approach to Modeling an Antagonistic Angiogenic VEGFR1-IL2 Fusion Protein for Cancer Therapy. Bioinformatics and Biology Insights. 15: 11779322211043297. PMID 34566410 DOI: 10.1177/11779322211043297   
2021 Babu N, Bhat MY, John AE, Chatterjee A. The role of proteomics in the multiplexed analysis of gene alterations in human cancer. Expert Review of Proteomics. PMID 34602018 DOI: 10.1080/14789450.2021.1984884   
2021 Chen J, Liu N, Huang Y, Wang Y, Sun Y, Wu Q, Li D, Gao S, Wang HW, Huang N, Qi X, Wang X. Structure of PDE3A-SLFN12 complex and structure-based design for a potent apoptosis inducer of tumor cells. Nature Communications. 12: 6204. PMID 34707099 DOI: 10.1038/s41467-021-26546-8   
2021 Mollner TA, Isenegger PG, Josephson B, Buchanan C, Lercher L, Oehlrich D, Hansen DF, Mohammed S, Baldwin AJ, Gouverneur V, Davis BG. Post-translational insertion of boron in proteins to probe and modulate function. Nature Chemical Biology. PMID 34725511 DOI: 10.1038/s41589-021-00883-7   
2021 McKenzie-Coe A, Montes NS, Jones LM. Hydroxyl Radical Protein Footprinting: A Mass Spectrometry-Based Structural Method for Studying the Higher Order Structure of Proteins. Chemical Reviews. PMID 34633178 DOI: 10.1021/acs.chemrev.1c00432   
2021 Hwang S, Iram S, Jin J, Choi I, Kim J. Analysis of S-glutathionylated proteins during adipocyte differentiation using eosin-glutathione and glutaredoxin 1. Bmb Reports. PMID 34743784   
2021 Bartholow TG, Sztain T, Young MA, Davis TD, Abagyan R, Burkart MD. Protein-protein interaction based substrate control in the octanoic acid transferase, LipB. Rsc Chemical Biology. 2: 1466-1473. PMID 34704050 DOI: 10.1039/d1cb00125f   
2021 Hanna GS, Choo YM, Harbit R, Paeth H, Wilde S, Mackle J, Verga JU, Wolf BJ, Thomas OP, Croot P, Cray J, Thomas C, Li LZ, Hardiman G, Hu JF, et al. Contemporary Approaches to the Discovery and Development of Broad-Spectrum Natural Product Prototypes for the Control of Coronaviruses. Journal of Natural Products. PMID 34677966 DOI: 10.1021/acs.jnatprod.1c00625   
2021 Dai M, Yuan D, Lei Y, Li J, Ren Y, Zhang Y, Cang H, Gao W, Tang Y. Expression, purification and structural characterization of resveratrol synthase from Polygonum cuspidatum. Protein Expression and Purification. 106024. PMID 34808343 DOI: 10.1016/j.pep.2021.106024   
2021 Kamimura R, Uchida D, Kanno SI, Shiraishi R, Hyodo T, Sawatani Y, Shimura M, Hasegawa T, Tsubura-Okubo M, Yaguchi E, Komiyama Y, Fukumoto C, Izumi S, Fujita A, Wakui T, et al. Identification of Binding Proteins for TSC22D1 Family Proteins Using Mass Spectrometry. International Journal of Molecular Sciences. 22. PMID 34681573 DOI: 10.3390/ijms222010913   
2021 Varasteh Moradi S, Johnston WA, Parker J, Alexandrov K. Leishmania tarentolae cell-free based approach for rapid anitbody-antigen interaction analysis. Methods in Enzymology. 659: 391-409. PMID 34752297 DOI: 10.1016/bs.mie.2021.06.017   
2021 Nallappan D, Fauzi AN, Krishna BS, Kumar BP, Reddy AVK, Syed T, Reddy CS, Yaacob NS, Rao PV. Green Biosynthesis, Antioxidant, Antibacterial, and Anticancer Activities of Silver Nanoparticles of Leaf Extract. Biomed Research International. 2021: 5125681. PMID 34631882 DOI: 10.1155/2021/5125681   
2021 Marando VM, Kim DE, Calabretta PJ, Kraft MB, Bryson BD, Kiessling LL. Biosynthetic Glycan Labeling. Journal of the American Chemical Society. PMID 34606245 DOI: 10.1021/jacs.1c07430   
2021 Khaddaj-Mallat R, Aldib N, Bernard M, Paquette AS, Ferreira A, Lecordier S, Saghatelyan A, Flamand L, ElAli A. SARS-CoV-2 deregulates the vascular and immune functions of brain pericytes via Spike protein. Neurobiology of Disease. 161: 105561. PMID 34780863 DOI: 10.1016/j.nbd.2021.105561