Craig D. Wenger, Ph.D. - Publications

Affiliations: 
2011 University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry & Proteomics

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Shortreed MR, Wenger CD, Frey BL, Sheynkman GM, Scalf M, Keller MP, Attie AD, Smith LM. Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14: 4714-20. PMID 26418581 DOI: 10.1021/acs.jproteome.5b00599  0.92
2013 Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ. Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Molecular & Cellular Proteomics : McP. 12: 3360-9. PMID 23882030 DOI: 10.1074/mcp.M113.032011  0.92
2013 Lee HY, Haurwitz RE, Apffel A, Zhou K, Smart B, Wenger CD, Laderman S, Bruhn L, Doudna JA. RNA-protein analysis using a conditional CRISPR nuclease. Proceedings of the National Academy of Sciences of the United States of America. 110: 5416-21. PMID 23493562 DOI: 10.1073/pnas.1302807110  0.92
2013 Wenger CD, Coon JJ. A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. Journal of Proteome Research. 12: 1377-86. PMID 23323968 DOI: 10.1021/pr301024c  0.92
2012 Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/pnas.1205292109  0.92
2012 Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/s13361-011-0331-5  0.92
2011 Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods. 8: 821-7. PMID 21983960 DOI: 10.1038/nmeth.1699  0.92
2011 Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/nmeth.1716  0.92
2011 Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP. A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Molecular Systems Biology. 7: 514. PMID 21772262 DOI: 10.1038/msb.2011.48  0.92
2011 Xia Q, Lee MV, Rose CM, Marsh AJ, Hubler SL, Wenger CD, Coon JJ. Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. Journal of the American Society For Mass Spectrometry. 22: 255-64. PMID 21472585 DOI: 10.1007/s13361-010-0029-0  0.92
2011 Wenger CD, Phanstiel DH, Lee MV, Bailey DJ, Coon JJ. COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA. Proteomics. 11: 1064-74. PMID 21298793 DOI: 10.1002/pmic.201000616  0.92
2010 Xia Q, Good DM, Wenger CD, Coon JJ. Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events. Rapid Communications in Mass Spectrometry : Rcm. 24: 3217-8. PMID 20941771 DOI: 10.1002/rcm.4743  0.92
2010 Wenger CD, McAlister GC, Xia Q, Coon JJ. Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Molecular & Cellular Proteomics : McP. 9: 754-63. PMID 20124352 DOI: 10.1074/mcp.M900541-MCP200  0.92
2010 Swaney DL, Wenger CD, Coon JJ. Value of using multiple proteases for large-scale mass spectrometry-based proteomics. Journal of Proteome Research. 9: 1323-9. PMID 20113005 DOI: 10.1021/pr900863u  0.92
2010 Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Phosphoproteomics for the masses. Acs Chemical Biology. 5: 105-19. PMID 20047291 DOI: 10.1021/cb900277e  0.92
2010 McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ. Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Analytical Chemistry. 82: 316-22. PMID 19938823 DOI: 10.1021/ac902005s  0.92
2010 Grimsrud PA, den Os D, Wenger CD, Swaney DL, Schwartz D, Sussman MR, Ané JM, Coon JJ. Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiology. 152: 19-28. PMID 19923235 DOI: 10.1104/pp.109.149625  0.92
2010 Good DM, Wenger CD, Coon JJ. The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics. 10: 164-7. PMID 19899080 DOI: 10.1002/pmic.200900570  0.92
2009 Ferguson JT, Wenger CD, Metcalf WW, Kelleher NL. Top-down proteomics reveals novel protein forms expressed in Methanosarcina acetivorans. Journal of the American Society For Mass Spectrometry. 20: 1743-50. PMID 19577935 DOI: 10.1016/j.jasms.2009.05.014  0.92
2009 Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ. Post-acquisition ETD spectral processing for increased peptide identifications. Journal of the American Society For Mass Spectrometry. 20: 1435-40. PMID 19362853 DOI: 10.1016/j.jasms.2009.03.006  0.92
2009 Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 995-1000. PMID 19144917 DOI: 10.1073/pnas.0811964106  0.92
2009 Boyne MT, Garcia BA, Li M, Zamdborg L, Wenger CD, Babai S, Kelleher NL. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval. Journal of Proteome Research. 8: 374-9. PMID 19053528 DOI: 10.1021/pr800635m  0.92
2008 Wenger CD, Boyne MT, Ferguson JT, Robinson DE, Kelleher NL. Versatile online-offline engine for automated acquisition of high-resolution tandem mass spectra. Analytical Chemistry. 80: 8055-63. PMID 18841935 DOI: 10.1021/ac8010704  0.92
2008 Krusemark CJ, Ferguson JT, Wenger CD, Kelleher NL, Belshaw PJ. Global amine and acid functional group modification of proteins. Analytical Chemistry. 80: 713-20. PMID 18184016 DOI: 10.1021/ac7019317  0.92
2007 Astle J, Ferguson JT, German JB, Harrigan GG, Kelleher NL, Kodadek T, Parks BA, Roth MJ, Singletary KW, Wenger CD, Mahady GB. Characterization of proteomic and metabolomic responses to dietary factors and supplements. The Journal of Nutrition. 137: 2787-93. PMID 18029500  0.92
2007 Parks BA, Jiang L, Thomas PM, Wenger CD, Roth MJ, Boyne MT, Burke PV, Kwast KE, Kelleher NL. Top-down proteomics on a chromatographic time scale using linear ion trap fourier transform hybrid mass spectrometers. Analytical Chemistry. 79: 7984-91. PMID 17915963 DOI: 10.1021/ac070553t  0.92
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