Alexander S. Hebert, Ph.D. - Publications

Affiliations: 
2013 Biomolecular Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry & Proteomics

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Riley NM, Hebert AS, Westphall MS, Coon JJ. Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. Nature Communications. 10: 1311. PMID 30899004 DOI: 10.1038/s41467-019-09222-w  0.92
2019 Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D. Systems-Level Analysis of Oxygen Exposure in : Implications for Isoprenoid Production. Msystems. 4. PMID 30801024 DOI: 10.1128/mSystems.00284-18  0.92
2019 McKetney J, Runde R, Hebert AS, Salamat S, Roy S, Coon JJ. Proteomic atlas of the human brain in Alzheimer's disease. Journal of Proteome Research. PMID 30735395 DOI: 10.1021/acs.jproteome.9b00004  0.92
2018 Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R. OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate. Metabolic Engineering. PMID 30594629 DOI: 10.1016/j.ymben.2018.12.008  0.92
2018 Zhang Z, Hebert A, Westphall M, Qu Y, Coon JJ, Dovichi NJ. Single Shot Capillary Zone Electrophoresis-Mass Spectrometry Produces Over 27,000 Peptide and Nearly 4,400 Protein Identifications by Combining a Very Low-Electroosmosis Coated Capillary, a Third-Generation Electrokinetically-Pumped Sheath-Flow Nanospray Interface, an Orbitrap Fusion Lumos Tribid Mass Spectrometer, and an Advanced Peak Determination Algorithm. Analytical Chemistry. PMID 30179504 DOI: 10.1021/acs.analchem.8b02991  0.92
2018 Shishkova E, Hebert AS, Westphall MS, Coon JJ. Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses. Analytical Chemistry. PMID 30179449 DOI: 10.1021/acs.analchem.8b02766  0.92
2018 Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ. Rapid and Comprehensive Single Shot Proteomics with LC-FAIMS-MS/MS. Analytical Chemistry. PMID 29969236 DOI: 10.1021/acs.analchem.8b02233  0.92
2018 Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen ZM4 and its xylose-utilizing derivatives 8b and 2032. Biotechnology For Biofuels. 11: 125. PMID 29743953 DOI: 10.1186/s13068-018-1116-x  0.92
2018 Esnault S, Hebert AS, Jarjour NN, Coon JJ, Mosher DF. Proteomic and Phospho-proteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3. Journal of Proteome Research. PMID 29706072 DOI: 10.1021/acs.jproteome.8b00057  0.92
2018 Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, Keller MP, Coon JJ, Attie AD. Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion. The Journal of Biological Chemistry. PMID 29496998 DOI: 10.1074/jbc.RA117.001102  0.92
2017 Hebert AS, Thoeing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ. Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical Chemistry. PMID 29272103 DOI: 10.1021/acs.analchem.7b04808  0.92
2017 Mosher DF, Wilkerson EM, Turton KB, Hebert AS, Coon JJ. Proteomics of Eosinophil Activation. Frontiers in Medicine. 4: 159. PMID 29034237 DOI: 10.3389/fmed.2017.00159  0.92
2017 Shishkova E, Kwiecien NW, Hebert AS, Westphall MS, Prenni JE, Coon JJ. Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences. Journal of the American Society For Mass Spectrometry. PMID 28952050 DOI: 10.1007/s13361-017-1803-z  0.92
2017 Diaz JE, Morgan CW, Minogue CE, Hebert AS, Coon JJ, Wells JA. A Split-Abl Kinase for Direct Activation in Cells. Cell Chemical Biology. PMID 28919041 DOI: 10.1016/j.chembiol.2017.08.007  0.92
2017 Hewitt KJ, Katsumura KR, Matson DR, Devadas P, Tanimura N, Hebert AS, Coon JJ, Kim JS, Dewey CN, Keles S, Hao S, Paulson RF, Bresnick EH. GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia. Developmental Cell. 42: 213-225.e4. PMID 28787589 DOI: 10.1016/j.devcel.2017.07.009  0.92
2017 Chung J, Wittig JG, Ghamari A, Maeda M, Dailey TA, Bergonia H, Kafina MD, Coughlin EE, Minogue CE, Hebert AS, Li L, Kaplan J, Lodish HF, Bauer DE, Orkin SH, et al. Erythropoietin signaling regulates heme biosynthesis. Elife. 6. PMID 28553927 DOI: 10.7554/eLife.24767  0.92
2017 Potts GK, McNally RM, Blanco R, You JS, Hebert AS, Westphall MS, Coon JJ, Hornberger TA. A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions. The Journal of Physiology. PMID 28542873 DOI: 10.1113/JP273904  0.92
2017 Shishkova E, Zeng H, Liu F, Kwiecien NW, Hebert AS, Coon JJ, Xu W. Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition. Nature Communications. 8: 15571. PMID 28537268 DOI: 10.1038/ncomms15571  0.92
2017 Riley NM, Hebert AS, Dürnberger G, Stanek F, Mechtler K, Westphall MS, Coon JJ. Phosphoproteomics with Activated Ion Electron Transfer Dissociation. Analytical Chemistry. PMID 28383256 DOI: 10.1021/acs.analchem.7b00212  0.92
2017 Riley NM, Westphall MS, Hebert AS, Coon JJ. Implementation of Activated Ion Electron Transfer Dissociation on a quadrupole-Orbitrap-linear ion trap hybrid mass spectrometer. Analytical Chemistry. PMID 28383247 DOI: 10.1021/acs.analchem.7b00213  0.92
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447  0.92
2016 Shishkova E, Hebert AS, Coon JJ. Now, More Than Ever, Proteomics Needs Better Chromatography. Cell Systems. 3: 321-324. PMID 27788355 DOI: 10.1016/j.cels.2016.10.007  0.92
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/journal.pgen.1006372  0.92
2016 Stefely JA, Kwiecien NW, Freiberger EC, Richards AL, Jochem A, Rush MJ, Ulbrich A, Robinson KP, Hutchins PD, Veling MT, Guo X, Kemmerer ZA, Connors KJ, Trujillo EA, Sokol J, ... ... Hebert AS, et al. Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling. Nature Biotechnology. PMID 27669165 DOI: 10.1038/nbt.3683  0.92
2016 Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, et al. Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity. Molecular Cell. PMID 27499294 DOI: 10.1016/j.molcel.2016.06.030  0.92
2016 Xue L, Blythe EE, Freiberger EC, Mamrosh J, Hebert AS, Reitsma JM, Hess S, Coon JJ, Deshaies RJ. VCP-adaptor interactions are exceptionally dynamic and subject to differential modulation by a VCP inhibitor. Molecular & Cellular Proteomics : McP. PMID 27406709 DOI: 10.1074/mcp.M116.061036  0.76
2016 Baughman JM, Rose CM, Kolumam G, Webster JD, Wilkerson EM, Merrill AE, Rhoads TW, Noubade R, Katavolos P, Lesch J, Stapleton DS, Rabaglia ME, Schueler KL, Asuncion R, Domeyer M, ... ... Hebert AS, et al. NeuCode Proteomics Reveals Bap1 Regulation of Metabolism. Cell Reports. 16: 583-595. PMID 27373151 DOI: 10.1016/j.celrep.2016.05.096  0.92
2016 Riley NM, Hebert AS, Coon JJ. Proteomics Moves into the Fast Lane. Cell Systems. 2: 142-143. PMID 27135360 DOI: 10.1016/j.cels.2016.03.002  0.76
2016 Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher D, Coon JJ. The peripheral blood eosinophil proteome. Journal of Proteome Research. PMID 27005946 DOI: 10.1021/acs.jproteome.6b00006  0.92
2016 Potts GK, Voigt EA, Bailey DJ, Rose CM, Westphall MS, Hebert AS, Yin J, Coon JJ. NEUCODE LABELS FOR MULTIPLEXED, ABSOLUTE PROTEIN QUANTIFICATION. Analytical Chemistry. PMID 26882330 DOI: 10.1021/acs.analchem.5b04773  0.76
2016 Dickinson Q, Bottoms S, Hinchman L, McIlwain S, Li S, Myers CL, Boone C, Coon JJ, Hebert A, Sato TK, Landick R, Piotrowski JS. Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain. Microbial Cell Factories. 15: 17. PMID 26790958 DOI: 10.1186/s12934-016-0417-7  0.76
2015 Huang M, Hebert AS, Coon JJ, Hull CM. Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus. Plos Genetics. 11: e1005490. PMID 26313153 DOI: 10.1371/journal.pgen.1005490  0.76
2015 Riley NM, Rush MJ, Rose CM, Richards AL, Kwiecien NW, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD). Molecular & Cellular Proteomics : McP. 14: 2644-60. PMID 26193884 DOI: 10.1074/mcp.M115.049726  0.76
2015 Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ. High-Resolution Filtering for Improved Small Molecule Identification via GC/MS. Analytical Chemistry. 87: 8328-35. PMID 26192401 DOI: 10.1021/acs.analchem.5b01503  0.76
2015 Zhao Y, Riley NM, Sun L, Hebert AS, Yan X, Westphall MS, Rush MJ, Zhu G, Champion MM, Mba Medie F, Champion PA, Coon JJ, Dovichi NJ. Coupling capillary zone electrophoresis with electron transfer dissociation and activated ion electron transfer dissociation for top-down proteomics. Analytical Chemistry. 87: 5422-9. PMID 25893372 DOI: 10.1021/acs.analchem.5b00883  0.76
2015 Richards AL, Hebert AS, Ulbrich A, Bailey DJ, Coughlin EE, Westphall MS, Coon JJ. One-hour proteome analysis in yeast. Nature Protocols. 10: 701-14. PMID 25855955 DOI: 10.1038/nprot.2015.040  0.76
2015 Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ. Multiplexed quantification for data-independent acquisition. Analytical Chemistry. 87: 2570-5. PMID 25621425 DOI: 10.1021/ac503593d  0.76
2014 Sun L, Hebert AS, Yan X, Zhao Y, Westphall MS, Rush MJ, Zhu G, Champion MM, Coon JJ, Dovichi NJ. Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 53: 13931-3. PMID 25346227 DOI: 10.1002/anie.201409075  0.76
2014 Bhatnagar S, Soni MS, Wrighton LS, Hebert AS, Zhou AS, Paul PK, Gregg T, Rabaglia ME, Keller MP, Coon JJ, Attie AD. Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion. The Journal of Biological Chemistry. 289: 25276-86. PMID 25002582 DOI: 10.1074/jbc.M114.575985  0.92
2014 Merrill AE, Hebert AS, MacGilvray ME, Rose CM, Bailey DJ, Bradley JC, Wood WW, El Masri M, Westphall MS, Gasch AP, Coon JJ. NeuCode labels for relative protein quantification. Molecular & Cellular Proteomics : McP. 13: 2503-12. PMID 24938287 DOI: 10.1074/mcp.M114.040287  0.76
2014 Dingley SD, Polyak E, Ostrovsky J, Srinivasan S, Lee I, Rosenfeld AB, Tsukikawa M, Xiao R, Selak MA, Coon JJ, Hebert AS, Grimsrud PA, Kwon YJ, Pagliarini DJ, Gai X, et al. Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans. Journal of Molecular Biology. 426: 2199-216. PMID 24534730 DOI: 10.1016/j.jmb.2014.02.009  0.76
2014 Rhoads TW, Rose CM, Bailey DJ, Riley NM, Molden RC, Nestler AJ, Merrill AE, Smith LM, Hebert AS, Westphall MS, Pagliarini DJ, Garcia BA, Coon JJ. Neutron-encoded mass signatures for quantitative top-down proteomics. Analytical Chemistry. 86: 2314-9. PMID 24475910 DOI: 10.1021/ac403579s  0.76
2014 Ulbrich A, Merrill AE, Hebert AS, Westphall MS, Keller MP, Attie AD, Coon JJ. Neutron-encoded protein quantification by peptide carbamylation. Journal of the American Society For Mass Spectrometry. 25: 6-9. PMID 24178922 DOI: 10.1007/s13361-013-0765-z  0.92
2014 Hebert AS, Richards AL, Bailey DJ, Ulbrich A, Coughlin EE, Westphall MS, Coon JJ. The one hour yeast proteome. Molecular & Cellular Proteomics : McP. 13: 339-47. PMID 24143002 DOI: 10.1074/mcp.M113.034769  0.76
2013 Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ. Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Molecular & Cellular Proteomics : McP. 12: 3360-9. PMID 23882030 DOI: 10.1074/mcp.M113.032011  0.76
2013 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, et al. Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation. The Journal of Biological Chemistry. 288: 26209-19. PMID 23864654 DOI: 10.1074/jbc.M113.483396  0.92
2013 Rose CM, Merrill AE, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. Neutron encoded labeling for peptide identification. Analytical Chemistry. 85: 5129-37. PMID 23638792 DOI: 10.1021/ac400476w  0.76
2013 Hebert AS, Merrill AE, Bailey DJ, Still AJ, Westphall MS, Strieter ER, Pagliarini DJ, Coon JJ. Neutron-encoded mass signatures for multiplexed proteome quantification. Nature Methods. 10: 332-4. PMID 23435260 DOI: 10.1038/nmeth.2378  0.76
2013 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, et al. Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome. Molecular Cell. 49: 186-99. PMID 23201123 DOI: 10.1016/j.molcel.2012.10.024  0.76
2012 Grimsrud PA, Carson JJ, Hebert AS, Hubler SL, Niemi NM, Bailey DJ, Jochem A, Stapleton DS, Keller MP, Westphall MS, Yandell BS, Attie AD, Coon JJ, Pagliarini DJ. A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis. Cell Metabolism. 16: 672-83. PMID 23140645 DOI: 10.1016/j.cmet.2012.10.004  0.92
2012 McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 84: 2875-82. PMID 22335612 DOI: 10.1021/ac203430u  0.76
2011 Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/nmeth.1716  0.76
2006 Bennett MT, Rodgers MT, Hebert AS, Ruslander LE, Eisele L, Drohat AC. Specificity of human thymine DNA glycosylase depends on N-glycosidic bond stability. Journal of the American Chemical Society. 128: 12510-9. PMID 16984202 DOI: 10.1021/ja0634829  0.76
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