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Hongyu Zhao, Ph.D. - Publications

Affiliations: 
2000 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Organic Chemistry
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhao H, Jiang Z, Lv R, Li X, Xing Y, Gao Y, Lv D, Si Y, Wang J, Li J, Zhao X, Cai L. Transcriptome profile analysis reveals a silica-induced immune response and fibrosis in a silicosis rat model. Toxicology Letters. PMID 32721576 DOI: 10.1016/j.toxlet.2020.07.021  0.72
2020 Liu T, Zhao H, Wang T. An empirical Bayes approach to normalization and differential abundance testing for microbiome data. Bmc Bioinformatics. 21: 225. PMID 32493208 DOI: 10.1186/s12859-020-03552-z  0.92
2020 Xing Y, Yang W, Liu G, Cui X, Meng H, Zhao H, Zhao X, Li J, Liu Z, Zhang MQ, Cai L. Dynamic Alternative Splicing During Mouse Preimplantation Embryo Development. Frontiers in Bioengineering and Biotechnology. 8: 35. PMID 32117919 DOI: 10.3389/fbioe.2020.00035  0.4
2020 Qiu S, Wang H, Li J, Zhao H, Wang Z, Wang J, Wang Q, Plettemeier D, Bärhold M, Bauer T, Ru B. Towards Wearable-Inertial-Sensor-Based Gait Posture Evaluation for Subjects with Unbalanced Gaits. Sensors (Basel, Switzerland). 20. PMID 32098239 DOI: 10.3390/s20041193  0.72
2020 Zhao H, Wang Y, Yang C, Zhou J, Wang L, Yi K, Li Y, Wang Q, Shi J, Kang C, Zeng L. EGFR-vIII downregulated H2AZK4/7AC though the PI3K/AKT-HDAC2 axis to regulate cell cycle progression. Clinical and Translational Medicine. 9: 10. PMID 31993801 DOI: 10.1186/s40169-020-0260-7  0.56
2019 Wang Y, Guo W, Liu Y, Wang J, Fan M, Zhao H, Xie S, Xu Y. Investigating the Protective Effect of Gross Saponins of Fruit against Ischemic Stroke in Rat Using Metabolomics and Network Pharmacology. Metabolites. 9. PMID 31640179 DOI: 10.3390/metabo9100240  0.72
2019 Zhao H, Cheng W, Yang N, Qiu S, Wang Z, Wang J. Smartphone-Based 3D Indoor Pedestrian Positioning through Multi-Modal Data Fusion. Sensors (Basel, Switzerland). 19. PMID 31635127 DOI: 10.3390/s19204554  0.72
2019 Song Y, Zhao H, Wang T. An adaptive independence test for microbiome community data. Biometrics. PMID 31538660 DOI: 10.1111/biom.13154  0.92
2019 Chen M, Zhao H. Next-generation sequencing in liquid biopsy: cancer screening and early detection. Human Genomics. 13: 34. PMID 31370908 DOI: 10.1186/s40246-019-0220-8  0.4
2019 Wang T, Yang C, Zhao H. Prediction analysis for microbiome sequencing data. Biometrics. PMID 30994187 DOI: 10.1111/biom.13061  0.92
2019 Scott MKD, Quinn K, Li Q, Carroll R, Warsinske H, Vallania F, Chen S, Carns MA, Aren K, Sun J, Koloms K, Lee J, Baral J, Kropski J, Zhao H, et al. Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study. The Lancet. Respiratory Medicine. PMID 30935881 DOI: 10.1016/S2213-2600(18)30508-3  0.36
2019 Hu Y, Li M, Lu Q, Weng H, Wang J, Zekavat SM, Yu Z, Li B, Gu J, Muchnik S, Shi Y, Kunkle BW, Mukherjee S, Natarajan P, Naj A, ... ... Zhao H, et al. A statistical framework for cross-tissue transcriptome-wide association analysis. Nature Genetics. PMID 30804563 DOI: 10.1038/s41588-019-0345-7  0.72
2019 Sun J, Herazo-Maya JD, Wang JL, Kaminski N, Zhao H. LCox: a tool for selecting genes related to survival outcomes using longitudinal gene expression data. Statistical Applications in Genetics and Molecular Biology. PMID 30759070 DOI: 10.1515/sagmb-2017-0060  0.36
2019 Xu L, Zhao H, Wan R, Liu Y, Xu Z, Tian W, Ruan W, Wang F, Deng M, Wang J, Dolan L, Luan S, Xue S, Yi K. Identification of vacuolar phosphate efflux transporters in land plants. Nature Plants. 5: 84-94. PMID 30626920 DOI: 10.1038/s41477-018-0334-3  0.72
2018 Sun J, Herazo-Maya JD, Molyneaux PL, Maher TM, Kaminski N, Zhao H. Regularized Latent Class Model for Joint Analysis of High Dimensional Longitudinal Biomarkers and A Time-to-Event Outcome. Biometrics. PMID 30178494 DOI: 10.1111/biom.12964  0.36
2018 Kaufman J, Montalvo-Ortiz JL, Holbrook H, O'Loughlin K, Orr C, Kearney C, Yang BZ, Wang T, Zhao H, Althoff R, Garavan H, Gelernter J, Hudziak J. Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth. The Journal of Pediatrics. PMID 30177354 DOI: 10.1016/j.jpeds.2018.06.051  0.92
2018 Zhao H, Zhang F, Guo M, Xing Y, Liu G, Zhao X, Cai L. The affinity of DNA sequences containing R5Y5 motif and TA repeats with 10.5-bp periodicity to histone octamer in vitro. Journal of Biomolecular Structure & Dynamics. 1-25. PMID 30044196 DOI: 10.1080/07391102.2018.1477621  0.4
2018 Liu H, Wang J, Liu M, Zhao H, Yaqoob S, Zheng M, Cai D, Liu J. Antiobesity Effects of Ginsenoside Rg1 on 3T3-L1 Preadipocytes and High Fat Diet-Induced Obese Mice Mediated by AMPK. Nutrients. 10. PMID 29954059 DOI: 10.3390/nu10070830  0.72
2018 Liu G, Xing Y, Zhao H, Cai L, Wang J. The implication of DNA bending energy for nucleosome positioning and sliding. Scientific Reports. 8: 8853. PMID 29891930 DOI: 10.1038/s41598-018-27247-x  0.72
2018 Ruan W, Guo M, Xu L, Wang X, Zhao H, Wang J, Yi K. An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice. The Plant Cell. PMID 29610209 DOI: 10.1105/tpc.17.00738  0.72
2018 Sun J, Herazo-Maya JD, Huang X, Kaminski N, Zhao H. Distance-correlation based gene set analysis in longitudinal studies. Statistical Applications in Genetics and Molecular Biology. PMID 29397393 DOI: 10.1515/sagmb-2017-0053  0.36
2017 Cui P, Zhong T, Wang Z, Wang T, Zhao H, Liu C, Lu H. Identification of human circadian genes based on time course gene expression profiles by using a deep learning method. Biochimica Et Biophysica Acta. PMID 29241666 DOI: 10.1016/j.bbadis.2017.12.004  0.92
2017 Herazo-Maya JD, Sun J, Molyneaux PL, Li Q, Villalba JA, Tzouvelekis A, Lynn H, Juan-Guardela BM, Risquez C, Osorio JC, Yan X, Michel G, Aurelien N, Lindell KO, Klesen MJ, ... ... Zhao H, et al. Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study. The Lancet. Respiratory Medicine. PMID 28942086 DOI: 10.1016/S2213-2600(17)30349-1  0.36
2017 Liu L, Zhao H, Peng S, Wang T, Su J, Liang Y, Li H, Wang H. Transcriptomic Analysis of Oenococcus oeni SD-2a Response to Acid Shock by RNA-Seq. Frontiers in Microbiology. 8: 1586. PMID 28878748 DOI: 10.3389/fmicb.2017.01586  0.92
2017 Sun J, Herazo-Maya JD, Kaminski N, Zhao H, Warren JL. A Dirichlet process mixture model for clustering longitudinal gene expression data. Statistics in Medicine. PMID 28620908 DOI: 10.1002/sim.7374  0.36
2017 Hu Y, Lu Q, Powles R, Yao X, Yang C, Fang F, Xu X, Zhao H. Leveraging functional annotations in genetic risk prediction for human complex diseases. Plos Computational Biology. 13: e1005589. PMID 28594818 DOI: 10.1371/journal.pcbi.1005589  0.56
2017 Sun J, Warren JL, Zhao H. A Bayesian semiparametric factor analysis model for subtype identification. Statistical Applications in Genetics and Molecular Biology. PMID 28343169 DOI: 10.1515/sagmb-2016-0051  0.36
2017 Wang T, Zhao H. A Dirichlet-tree multinomial regression model for associating dietary nutrients with gut microorganisms. Biometrics. PMID 28112797 DOI: 10.1111/biom.12654  0.92
2017 Lin Z, Wang T, Yang C, Zhao H. On joint estimation of Gaussian graphical models for spatial and temporal data. Biometrics. PMID 28099997 DOI: 10.1111/biom.12650  0.92
2016 Zhao H, Wei H, Liu X, Yao Z, Xu M, Wei D, Wang J, Wang X, Chen GQ. Structural Insights on PHA Binding Protein PhaP from Aeromonas hydrophila. Scientific Reports. 6: 39424. PMID 28009010 DOI: 10.1038/srep39424  0.72
2016 Lin Z, Yang C, Zhu Y, Duchi J, Fu Y, Wang Y, Jiang B, Zamanighomi M, Xu X, Li M, Sestan N, Zhao H, Wong WH. Simultaneous dimension reduction and adjustment for confounding variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930330 DOI: 10.1073/pnas.1617317113  0.56
2016 Lu Q, Jin C, Sun J, Bowler R, Kechris K, Kaminski N, Zhao H. Post-GWAS Prioritization Through Data Integration Provides Novel Insights on Chronic Obstructive Pulmonary Disease. Statistics in Biosciences. 2016: 1-17. PMID 27812370 DOI: 10.1007/s12561-016-9151-2  0.36
2016 Chen M, Ren Z, Zhao H, Zhou H. Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model. Journal of the American Statistical Association. 111: 394-406. PMID 27499564 DOI: 10.1080/01621459.2015.1010039  0.4
2016 Li C, Yang C, Hather G, Liu R, Zhao H. Efficient Drug-Pathway Association Analysis via Integrative Penalized Matrix Decomposition. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 531-540. PMID 27295636 DOI: 10.1109/TCBB.2015.2462344  0.56
2016 Liu J, Yang C, Shi X, Li C, Huang J, Zhao H, Ma S. Analyzing Association Mapping in Pedigree-Based GWAS Using a Penalized Multitrait Mixed Model. Genetic Epidemiology. PMID 27247027 DOI: 10.1002/gepi.21975  0.56
2016 Chen M, Lin H, Zhao H. CHANGE POINT ANALYSIS OF HISTONE MODIFICATIONS REVEALS EPIGENETIC BLOCKS LINKING TO PHYSICAL DOMAINS. The Annals of Applied Statistics. 10: 506-526. PMID 27231496 DOI: 10.1214/16-AOAS905  0.4
2016 Xing Y, Zhao X, Yu T, Liang D, Li J, Wei G, Liu G, Cui X, Zhao H, Cai L. MiasDB: A Database of Molecular Interactions Associated with Alternative Splicing of Human Pre-mRNAs. Plos One. 11: e0155443. PMID 27167218 DOI: 10.1371/journal.pone.0155443  0.4
2016 Chen M, Gao C, Zhao H. Posterior Contraction Rates of the Phylogenetic Indian Buffet Processes. Bayesian Analysis. 11: 477-497. PMID 27087886 DOI: 10.1214/15-BA958  0.4
2016 Liu G, Xing Y, Zhao H, Wang J, Shang Y, Cai L. A deformation energy-based model for predicting nucleosome dyads and occupancy. Scientific Reports. 6: 24133. PMID 27053067 DOI: 10.1038/srep24133  0.72
2016 Lin Z, Li M, Sestan N, Zhao H. A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data. Statistical Applications in Genetics and Molecular Biology. PMID 26926866 DOI: 10.1515/sagmb-2015-0070  0.44
2015 Lin Z, Sanders SJ, Li M, Sestan N, State MW, Zhao H. A MARKOV RANDOM FIELD-BASED APPROACH TO CHARACTERIZING HUMAN BRAIN DEVELOPMENT USING SPATIAL-TEMPORAL TRANSCRIPTOME DATA. The Annals of Applied Statistics. 9: 429-451. PMID 26877824 DOI: 10.1214/14-AOAS802  0.44
2015 Wang T, Chen M, Zhao H. Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data. Biometrics. PMID 26433612 DOI: 10.1111/biom.12422  0.92
2015 Wang Q, Yang C, Gelernter J, Zhao H. Pervasive pleiotropy between psychiatric disorders and immune disorders revealed by integrative analysis of multiple GWAS. Human Genetics. PMID 26340901 DOI: 10.1007/s00439-015-1596-8  0.56
2015 Polimanti R, Yang C, Zhao H, Gelernter J. Dissecting ancestry genomic background in substance dependence genome-wide association studies. Pharmacogenomics. 1-12. PMID 26267224 DOI: 10.2217/pgs.15.91  0.56
2015 Yang C, Li C, Wang Q, Chung D, Zhao H. Implications of pleiotropy: challenges and opportunities for mining Big Data in biomedicine. Frontiers in Genetics. 6: 229. PMID 26175753 DOI: 10.3389/fgene.2015.00229  0.56
2015 Sun J, Zhang L, Zhao H, Qiu X, Chen W, Wang D, Ban N, Fan S, Shen C, Xia X, Ji B, Wang Y. CHD1L Regulates Cell Cycle, Apoptosis, and Migration in Glioma. Cellular and Molecular Neurobiology. PMID 26162969 DOI: 10.1007/s10571-015-0237-z  0.36
2015 Zhao H, Xing Y, Liu G, Chen P, Zhao X, Li G, Cai L. GAA triplet-repeats cause nucleosome depletion in the human genome. Genomics. PMID 26100357 DOI: 10.1016/j.ygeno.2015.06.010  0.4
2015 Lu Q, Hu Y, Sun J, Cheng Y, Cheung KH, Zhao H. A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data. Scientific Reports. 5: 10576. PMID 26015273 DOI: 10.1038/srep10576  0.36
2015 Sun J, Zhao H. The application of sparse estimation of covariance matrix to quadratic discriminant analysis. Bmc Bioinformatics. 16: 48. PMID 25886892 DOI: 10.1186/s12859-014-0443-6  0.36
2015 Lam W, Jiang Z, Guan F, Huang X, Hu R, Wang J, Bussom S, Liu SH, Zhao H, Yen Y, Cheng YC. PHY906(KD018), an adjuvant based on a 1800-year-old Chinese medicine, enhanced the anti-tumor activity of Sorafenib by changing the tumor microenvironment. Scientific Reports. 5: 9384. PMID 25819872 DOI: 10.1038/srep09384  0.72
2015 Lu Y, Zhao H, Liu Y, Zhou X, Wang J, Liu T, Beier RC, Hou X. Characterization of quinolone resistance in Salmonella enterica serovar Indiana from chickens in China1. Poultry Science. 94: 454-60. PMID 25701209 DOI: 10.3382/ps/peu133  0.72
2014 Yang C, Li C, Chen M, Chen X, Hou L, Zhao H. A penalized linear mixed model for genomic prediction using pedigree structures. Bmc Proceedings. 8: S67. PMID 25519399 DOI: 10.1186/1753-6561-8-S1-S67  0.56
2014 Li C, Yang C, Chen M, Chen X, Hou L, Zhao H. Adjustment of familial relatedness in association test for rare variants. Bmc Proceedings. 8: S39. PMID 25519384 DOI: 10.1186/1753-6561-8-S1-S39  0.56
2014 Chen M, Yang C, Li C, Hou L, Chen X, Zhao H. Admixture mapping analysis in the context of GWAS with GAW18 data. Bmc Proceedings. 8: S3. PMID 25519317 DOI: 10.1186/1753-6561-8-S1-S3  0.56
2014 Chung D, Yang C, Li C, Gelernter J, Zhao H. GPA: a statistical approach to prioritizing GWAS results by integrating pleiotropy and annotation. Plos Genetics. 10: e1004787. PMID 25393678 DOI: 10.1371/journal.pgen.1004787  0.56
2014 Deng M, Hu B, Xu L, Liu Y, Wang F, Zhao H, Wei X, Wang J, Yi K. OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.). Plant Molecular Biology. 86: 655-69. PMID 25315105 DOI: 10.1007/s11103-014-0254-1  0.72
2010 Hoye TR, Danielson ME, May AE, Zhao H. Total synthesis of (-)-callipeltoside A. The Journal of Organic Chemistry. 75: 7052-60. PMID 20932014 DOI: 10.1021/jo101598y  0.72
2008 Hoye TR, Danielson ME, May AE, Zhao H. Dual macrolactonization/pyran-hemiketal formation via acylketenes: applications to the synthesis of (-)-callipeltoside A and a lyngbyaloside B model system. Angewandte Chemie (International Ed. in English). 47: 9743-6. PMID 18979468 DOI: 10.1002/anie.200804049  0.72
2004 Hoye TR, Jeffrey CS, Tennakoon MA, Wang J, Zhao H. Relay ring-closing metathesis (RRCM): a strategy for directing metal movement throughout olefin metathesis sequences. Journal of the American Chemical Society. 126: 10210-1. PMID 15315410 DOI: 10.1021/ja046385t  0.72
2002 Hoye TR, Zhao H. A method for easily determining coupling constant values: an addendum to "A practical guide to first-order multiplet analysis in 1H NMR spectroscopy". The Journal of Organic Chemistry. 67: 4014-6. PMID 12054933 DOI: 10.1021/jo001139v  0.72
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