Enver C. Izgu, Ph.D. - Related publications

Affiliations: 
2012 Chemistry University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Organic Chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Thomas C, Rusanov T, Hoang T, Augustin T, Kent T, Gaspar I, Pomerantz RT. One-step enzymatic modification of RNA 3' termini using polymerase θ. Nucleic Acids Research. PMID 30818397 DOI: 10.1093/nar/gkz029   
2019 Egli M, Manoharan M. Re-Engineering RNA Molecules into Therapeutic Agents. Accounts of Chemical Research. PMID 30912917 DOI: 10.1021/acs.accounts.8b00650   
2019 Flamme M, McKenzie LK, Sarac I, Hollenstein M. Chemical methods for the modification of RNA. Methods (San Diego, Calif.). PMID 30905751 DOI: 10.1016/j.ymeth.2019.03.018   
2019 Luige O, Murtola M, Ghidini A, Strömberg R. Further Probing of Cu-Dependent PNAzymes Acting as Artificial RNA Restriction Enzymes. Molecules (Basel, Switzerland). 24. PMID 30769777 DOI: 10.3390/molecules24040672   
2019 Randrianjatovo-Gbalou I, Delarue M. Rapid enzymatic synthesis of long RNA polymers: A simple protocol to generate RNA libraries with random sequences. Methods (San Diego, Calif.). PMID 30926532 DOI: 10.1016/j.ymeth.2019.03.025   
2019 Murase H, Nagatsugi F. Development of the binding molecules for the RNA higher-order structures based on the guanine-recognition by the G-clamp. Bioorganic & Medicinal Chemistry Letters. PMID 30956013 DOI: 10.1016/j.bmcl.2019.03.052   
2019 Behnam B, Bohorquez-Chaux A, Castaneda-Mendez OF, Tsuji H, Ishitani M, Becerra Lopez-Lavalle LA. An optimized isolation protocol yields high-quality RNA from cassava tissues ( Crantz). Febs Open Bio. 9: 814-825. PMID 30984554 DOI: 10.1002/2211-5463.12561   
2019 Krishna MS, Toh DK, Meng Z, Ong AAL, Wang Z, Lu Y, Xia K, Prabakaran M, Chen G. Sequence- and structure-specific probing of RNAs by short nucleobase-modified dsRNA-binding PNAs (dbPNAs) incorporating a fluorescent light-up uracil analog. Analytical Chemistry. PMID 30873827 DOI: 10.1021/acs.analchem.9b00280   
2019 Henderson K, Evensen CE, Molzahn C, Felth LC, Dyke S, Liao G, Shkel IA, Record MT. RNA Polymerase: Step by Step Kinetics and Mechanism of Transcription Initiation. Biochemistry. PMID 30950601 DOI: 10.1021/acs.biochem.9b00049   
2019 Desfosses A, Milles S, Jensen MR, Guseva S, Colletier JP, Maurin D, Schoehn G, Gutsche I, Ruigrok RWH, Blackledge M. Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication. Proceedings of the National Academy of Sciences of the United States of America. PMID 30787192 DOI: 10.1073/pnas.1816417116   
2019 Ren X, Linehan MM, Iwasaki A, Pyle AM. RIG-I Selectively Discriminates against 5'-Monophosphate RNA. Cell Reports. 26: 2019-2027.e4. PMID 30784585 DOI: 10.1016/j.celrep.2019.01.107   
2019 Law YS, Utt A, Tan YB, Zheng J, Wang S, Chen MW, Griffin PR, Merits A, Luo D. Structural insights into RNA recognition by the Chikungunya virus nsP2 helicase. Proceedings of the National Academy of Sciences of the United States of America. PMID 31000599 DOI: 10.1073/pnas.1900656116   
2019 Martin S, Blankenship C, Rausch JW, Sztuba-Solinska J. Using SHAPE-MaP to probe small molecule-RNA interactions. Methods (San Diego, Calif.). PMID 31009771 DOI: 10.1016/j.ymeth.2019.04.009   
2019 Guan L, Ma X, Zhou X, Tan B, Wang ZY. An optimized method to obtain high-quality RNA from cassava storage root. 3 Biotech. 9: 118. PMID 30854278 DOI: 10.1007/s13205-019-1608-9   
2019 Almeida MV, de Jesus Domingues AM, Lukas H, Mendez-Lago M, Ketting RF. RppH can faithfully replace TAP to allow cloning of 5'-triphosphate carrying small RNAs. Methodsx. 6: 265-272. PMID 30788220 DOI: 10.1016/j.mex.2019.01.009   
2019 Becker WR, Jarmoskaite I, Vaidyanathan PP, Greenleaf WJ, Herschlag D. Demonstration of Protein Cooperativity Mediated by RNA Structure Using the Human Protein PUM2. Rna (New York, N.Y.). PMID 30914482 DOI: 10.1261/rna.068585.118   
2019 Molina-Sánchez MD, Toro N. DNA cleavage and reverse splicing of ribonucleoprotein particles reconstituted in vitro with linear RmInt1 RNA. Rna Biology. 1-10. PMID 30943851 DOI: 10.1080/15476286.2019.1601379   
2019 Blevins T, Podicheti R, Pikaard CS. Analysis of siRNA Precursors Generated by RNA Polymerase IV and RNA-Dependent RNA Polymerase 2 in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1933: 33-48. PMID 30945177 DOI: 10.1007/978-1-4939-9045-0_2   
2019 Lai YH, Choudhary K, Cloutier SC, Xing Z, Aviran S, Tran EJ. Genome-Wide Discovery of DEAD-Box RNA Helicase Targets Reveals RNA Structural Remodeling in Transcription Termination. Genetics. PMID 30902808 DOI: 10.1534/genetics.119.302058   
2019 Walton T, Zhang W, Li L, Tam CP, Szostak JW. The mechanism of nonenzymatic template copying with imidazole-activated nucleotides. Angewandte Chemie (International Ed. in English). PMID 30908802 DOI: 10.1002/anie.201902050   
2019 Chu LY, Agrawal S, Chen YP, Yang WS, Yuan HS. Structural insights into nanoRNA degradation by human Rexo2. Rna (New York, N.Y.). PMID 30926754 DOI: 10.1261/rna.070557.119   
2019 Bayfield MA, Vinayak J, Kerkhofs K, Mansouri-Noori F. La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates. Rna Biology. PMID 30777481 DOI: 10.1080/15476286.2019.1582955   
2019 Chopra A, Sagredo S, Grossi G, Andersen ES, Simmel FC. Out-of-Plane Aptamer Functionalization of RNA Three-Helix Tiles. Nanomaterials (Basel, Switzerland). 9. PMID 30986942 DOI: 10.3390/nano9040507   
2019 Park HS, Kietrys AM, Kool ET. Simple alkanoyl acylating agents for reversible RNA functionalization and control. Chemical Communications (Cambridge, England). PMID 30977472 DOI: 10.1039/c9cc01598a   
2019 O'Hara JM, Marashi D, Morton S, Jaeger L, Grabow WW. Optimization of the Split-Spinach Aptamer for Monitoring Nanoparticle Assembly Involving Multiple Contiguous RNAs. Nanomaterials (Basel, Switzerland). 9. PMID 30845655 DOI: 10.3390/nano9030378   
2019 Dagil R, Ball NJ, Ogrodowicz RW, Hobor F, Purkiss AG, Kelly G, Martin SR, Taylor IA, Ramos A. IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties. Nucleic Acids Research. PMID 30864660 DOI: 10.1093/nar/gkz136   
2019 Urdaneta EC, Vieira-Vieira CH, Hick T, Wessels HH, Figini D, Moschall R, Medenbach J, Ohler U, Granneman S, Selbach M, Beckmann BM. Purification of cross-linked RNA-protein complexes by phenol-toluol extraction. Nature Communications. 10: 990. PMID 30824702 DOI: 10.1038/s41467-019-08942-3   
2019 Kappel K, Jarmoskaite I, Vaidyanathan PP, Greenleaf WJ, Herschlag D, Das R. Blind tests of RNA-protein binding affinity prediction. Proceedings of the National Academy of Sciences of the United States of America. PMID 30962376 DOI: 10.1073/pnas.1819047116   
2019 Zhang Y, Han D, Dong X, Wang J, Chen J, Yao Y, Darwish HYA, Liu W, Deng X. Genome-wide profiling of RNA editing sites in sheep. Journal of Animal Science and Biotechnology. 10: 31. PMID 30918658 DOI: 10.1186/s40104-019-0331-z   
2019 Krissanaprasit A, Key C, Fergione M, Froehlich K, Pontula S, Hart M, Carriel P, Kjems J, Andersen ES, LaBean TH. Genetically Encoded, Functional Single-Strand RNA Origami: Anticoagulant. Advanced Materials (Deerfield Beach, Fla.). e1808262. PMID 30972819 DOI: 10.1002/adma.201808262   
2019 Velagapudi SP, Li Y, Disney MD. A cross-linking approach to map small molecule-RNA binding sites in cells. Bioorganic & Medicinal Chemistry Letters. PMID 30987892 DOI: 10.1016/j.bmcl.2019.04.001   
2019 Khoddami V, Yerra A, Mosbruger TL, Fleming AM, Burrows CJ, Cairns BR. Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 30872485 DOI: 10.1073/pnas.1817334116   
2019 Zellmann F, Thomas L, Scheffer U, Hartmann RK, Göbel MW. Site-Specific Cleavage of RNAs Derived from the 3'-UTR by a Metal-Free Artificial Ribonuclease. Molecules (Basel, Switzerland). 24. PMID 30813393 DOI: 10.3390/molecules24040807   
2019 Tan CCS, Maurer-Stroh S, Wan Y, Sessions OM, de Sessions PF. A novel method for the capture-based purification of whole viral native RNA genomes. Amb Express. 9: 45. PMID 30963294 DOI: 10.1186/s13568-019-0772-y   
2019 Slaymaker IM, Mesa P, Kellner MJ, Kannan S, Brignole E, Koob J, Feliciano PR, Stella S, Abudayyeh OO, Gootenberg JS, Strecker J, Montoya G, Zhang F. High-Resolution Structure of Cas13b and Biochemical Characterization of RNA Targeting and Cleavage. Cell Reports. 26: 3741-3751.e5. PMID 30917325 DOI: 10.1016/j.celrep.2019.02.094   
2019 Seo JS, Chua NH. Analysis of Interaction Between Long Noncoding RNAs and Protein by RNA Immunoprecipitation in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1933: 289-295. PMID 30945193 DOI: 10.1007/978-1-4939-9045-0_18   
2019 Wang Y, Gao Y, Zhang H, Wang H, Liu X, Xu X, Zhang Z, Markus VK, Kaiqiang H, Wang H, Xi F, Zhao L, Lin C, Gu L. Genome-wide profiling of circular RNAs in the rapidly growing shoots of moso bamboo (Phyllostachys edulis). Plant & Cell Physiology. PMID 30835314 DOI: 10.1093/pcp/pcz043   
2019 Meyer A, Golbik RP, Sänger L, Schmidt T, Behrens SE, Friedrich S. The RGG/RG motif of AUF1 isoform p45 is a key modulator of the protein's RNA chaperone and RNA annealing activities. Rna Biology. PMID 30951406 DOI: 10.1080/15476286.2019.1602438   
2019 Jasinski DL, Binzel DW, Guo P. One-Pot Production of RNA Nanoparticles via Automated Processing and Self Assembly. Acs Nano. PMID 30888787 DOI: 10.1021/acsnano.9b00649   
2019 Pezone A, Zuchegna C, Tramontano A, Romano A, Russo G, de Rosa M, Vinciguerra M, Porcellini A, Gottesman ME, Avvedimento EV. RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones. Scientific Reports. 9: 3925. PMID 30850627 DOI: 10.1038/s41598-019-40123-6   
2019 Boussebayle A, Torka D, Ollivaud S, Braun J, Bofill-Bosch C, Dombrowski M, Groher F, Hamacher K, Suess B. Next-level riboswitch development-implementation of Capture-SELEX facilitates identification of a new synthetic riboswitch. Nucleic Acids Research. PMID 30957848 DOI: 10.1093/nar/gkz216   
2019 Gu X, Liang Z. Transcriptome-Wide Mapping 5-Methylcytosine by mC RNA Immunoprecipitation Followed by Deep Sequencing in Plant. Methods in Molecular Biology (Clifton, N.J.). 1933: 389-394. PMID 30945199 DOI: 10.1007/978-1-4939-9045-0_24   
2019 Gomes-Filho JV, Randau L. RNA stabilization in hyperthermophilic archaea. Annals of the New York Academy of Sciences. PMID 30994930 DOI: 10.1111/nyas.14060   
2019 Boneberg F, Brandmann T, Kobel L, van den Heuvel J, Bargsten K, Bammert L, Kutay U, Jinek M. Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14 in ribosome biogenesis. Rna (New York, N.Y.). PMID 30910870 DOI: 10.1261/rna.069609.118   
2019 Akabane-Nakata M, Kumar P, Das RS, Erande ND, Matsuda S, Egli M, Manoharan M. Synthesis and Biophysical Characterization of RNAs Containing 2'-Fluorinated Northern Methanocarbacyclic Nucleotides. Organic Letters. PMID 30892051 DOI: 10.1021/acs.orglett.8b04153   
2019 Meng E, Tang B, Sanchez-Garcia FJ, Qiao T, Fu L, Wang Y, Hou YM, Wu JL, Chen ZM. The First Complete Genome Sequence of a Novel RNA Virus-1 (TbRV-1). Viruses. 11. PMID 30871248 DOI: 10.3390/v11030257   
2019 Chauvier A, Cabello-Villegas J, Walter NG. Probing RNA structure and interaction dynamics at the single molecule level. Methods (San Diego, Calif.). PMID 30951833 DOI: 10.1016/j.ymeth.2019.04.002   
2019 Hu L, Zhao Y, Niu D, Yang R. Establishing an RNA extraction method from a small number of Demodex mites for transcriptome sequencing. Experimental Parasitology. PMID 30904695 DOI: 10.1016/j.exppara.2019.03.006   
2019 Horos R, Büscher M, Sachse C, Hentze MW. Vault RNA emerges as a regulator of selective autophagy. Autophagy. PMID 31006338 DOI: 10.1080/15548627.2019.1609861   
2019 Comas-Garcia M. Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story. Viruses. 11. PMID 30871184 DOI: 10.3390/v11030253