| Year |
Citation |
Score |
| 2022 |
Hardo G, Noka M, Bakshi S. Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks. Bmc Biology. 20: 263. PMID 36447211 DOI: 10.1186/s12915-022-01453-6 |
0.717 |
|
| 2022 |
Moschner C, Wedd C, Bakshi S. The context matrix: Navigating biological complexity for advanced biodesign. Frontiers in Bioengineering and Biotechnology. 10: 954707. PMID 36082163 DOI: 10.3389/fbioe.2022.954707 |
0.696 |
|
| 2021 |
Bakshi S, Leoncini E, Baker C, Cañas-Duarte SJ, Okumus B, Paulsson J. Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence. Nature Microbiology. 6: 783-791. PMID 34017106 DOI: 10.1038/s41564-021-00900-4 |
0.611 |
|
| 2021 |
Manuse S, Shan Y, Canas-Duarte SJ, Bakshi S, Sun WS, Mori H, Paulsson J, Lewis K. Bacterial persisters are a stochastically formed subpopulation of low-energy cells. Plos Biology. 19: e3001194. PMID 33872303 DOI: 10.1371/journal.pbio.3001194 |
0.594 |
|
| 2021 |
Hardo G, Bakshi S. Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments. Essays in Biochemistry. 65: 67-79. PMID 33835126 DOI: 10.1042/EBC20200015 |
0.724 |
|
| 2021 |
Riglar DT, Richmond DL, Potvin-Trottier L, Verdegaal AA, Naydich AD, Bakshi S, Leoncini E, Lyon LG, Paulsson J, Silver PA. Author Correction: Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Nature Communications. 12: 1818. PMID 33727556 DOI: 10.1038/s41467-021-22149-5 |
0.583 |
|
| 2019 |
Riglar DT, Richmond DL, Potvin-Trottier L, Verdegaal AA, Naydich AD, Bakshi S, Leoncini E, Lyon LG, Paulsson J, Silver PA. Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Nature Communications. 10: 4665. PMID 31604953 DOI: 10.1038/S41467-019-12638-Z |
0.629 |
|
| 2019 |
Lord ND, Norman TM, Yuan R, Bakshi S, Losick R, Paulsson J. Stochastic antagonism between two proteins governs a bacterial cell fate switch. Science (New York, N.Y.). 366: 116-120. PMID 31604312 DOI: 10.1126/Science.Aaw4506 |
0.644 |
|
| 2019 |
Lepore A, Taylor H, Landgraf D, Okumus B, Jaramillo-Riveri S, McLaren L, Bakshi S, Paulsson J, Karoui ME. Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy. Scientific Reports. 9: 7902. PMID 31133640 DOI: 10.1038/S41598-019-44278-0 |
0.751 |
|
| 2018 |
Okumus B, Baker CJ, Arias-Castro JC, Lai GC, Leoncini E, Bakshi S, Luro S, Landgraf D, Paulsson J. Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform. Nature Protocols. 13: 170-194. PMID 29266097 DOI: 10.1038/Nprot.2017.127 |
0.783 |
|
| 2016 |
Okumus B, Landgraf D, Lai GC, Bakshi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J. Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature Communications. 7: 12130. PMID 27338979 DOI: 10.1038/Ncomms12130 |
0.759 |
|
| 2015 |
Bakshi S, Choi H, Weisshaar JC. The spatial biology of transcription and translation in rapidly growing Escherichia coli. Frontiers in Microbiology. 6: 636. PMID 26191045 DOI: 10.3389/Fmicb.2015.00636 |
0.785 |
|
| 2014 |
Bakshi S, Choi H, Mondal J, Weisshaar JC. Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes. Molecular Microbiology. 94: 871-87. PMID 25250841 DOI: 10.1111/Mmi.12805 |
0.78 |
|
| 2014 |
Bakshi S, Choi H, Rangarajan N, Barns KJ, Bratton BP, Weisshaar JC. Nonperturbative imaging of nucleoid morphology in live bacterial cells during an antimicrobial peptide attack. Applied and Environmental Microbiology. 80: 4977-86. PMID 24907320 DOI: 10.1128/Aem.00989-14 |
0.726 |
|
| 2014 |
Bakshi S, Weisshaar J. Localization and Tracking of Single RNA Polymerase Molecules in Live E. Coli Biophysical Journal. 106: 486a. DOI: 10.1016/J.Bpj.2013.11.4466 |
0.653 |
|
| 2013 |
Bakshi S, Dalrymple RM, Li W, Choi H, Weisshaar JC. Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories. Biophysical Journal. 105: 2676-86. PMID 24359739 DOI: 10.1016/J.Bpj.2013.10.024 |
0.737 |
|
| 2013 |
Rangarajan N, Bakshi S, Weisshaar JC. Localized permeabilization of E. coli membranes by the antimicrobial peptide Cecropin A. Biochemistry. 52: 6584-94. PMID 23988088 DOI: 10.1021/Bi400785J |
0.776 |
|
| 2013 |
Eun YJ, Zhou M, Kiekebusch D, Schlimpert S, Trivedi RR, Bakshi S, Zhong Z, Wahlig TA, Thanbichler M, Weibel DB. Divin: a small molecule inhibitor of bacterial divisome assembly. Journal of the American Chemical Society. 135: 9768-76. PMID 23738839 DOI: 10.1021/Ja404640F |
0.42 |
|
| 2013 |
Weisshaar JC, Li W, Dalrymple R, Bakshi S. Superresolution Imaging of RNAP and Ribosomes in Live E. Coli Biophysical Journal. 104: 524a. DOI: 10.1016/J.Bpj.2012.11.2900 |
0.769 |
|
| 2012 |
Bakshi S, Siryaporn A, Goulian M, Weisshaar JC. Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells. Molecular Microbiology. 85: 21-38. PMID 22624875 DOI: 10.1111/J.1365-2958.2012.08081.X |
0.666 |
|
| 2012 |
Bakshi S, Weisshaar JC. Super-Resolution Study of the Dynamics and Spatial Distribution of Ribosomes in Live E. Coli Cells Biophysical Journal. 102: 388a. DOI: 10.1016/J.Bpj.2011.11.2120 |
0.678 |
|
| 2011 |
Bakshi S, Bratton BP, Weisshaar JC. Subdiffraction-limit study of Kaede diffusion and spatial distribution in live Escherichia coli. Biophysical Journal. 101: 2535-44. PMID 22098753 DOI: 10.1016/J.Bpj.2011.10.013 |
0.786 |
|
| 2011 |
Bratton BP, Bakshi S, Weisshaar JC. Probing Diffusion in Live E. coli using Single-Molecule Tracking Biophysical Journal. 100: 477a. DOI: 10.1016/J.Bpj.2010.12.2796 |
0.797 |
|
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