Gene W. Tyson, Ph.D. - Publications

Affiliations: 
2006 University of California, Berkeley, Berkeley, CA 
Area:
Mineralogy, environmental geochemistry, geomicrobiology, and nanogeoscience

92 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zinke LA, Evans PN, Santos-Medellín C, Schroeder AL, Parks DH, Varner RK, Rich VI, Tyson GW, Emerson JB. Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales. Environmental Microbiology. PMID 33185945 DOI: 10.1111/1462-2920.15316  0.32
2020 Leu AO, McIlroy SJ, Ye J, Parks DH, Orphan VJ, Tyson GW. Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family . Mbio. 11. PMID 32605988 DOI: 10.1128/mBio.01325-20  0.32
2020 Leu AO, Cai C, McIlroy SJ, Southam G, Orphan VJ, Yuan Z, Hu S, Tyson GW. Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. The Isme Journal. PMID 31988473 DOI: 10.1038/s41396-020-0590-x  0.32
2019 Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The Isme Journal. PMID 31754204 DOI: 10.1038/s41396-019-0556-z  0.32
2019 Cai C, Shi Y, Guo J, Tyson GW, Hu S, Yuan Z. Acetate Production from Anaerobic Oxidation of Methane via Intracellular Storage Compounds. Environmental Science & Technology. PMID 31244078 DOI: 10.1021/acs.est.9b00077  0.68
2019 Evans PN, Boyd JA, Leu AO, Woodcroft BJ, Parks DH, Hugenholtz P, Tyson GW. An evolving view of methane metabolism in the Archaea. Nature Reviews. Microbiology. PMID 30664670 DOI: 10.1038/s41579-018-0136-7  0.32
2019 Boyd JA, Jungbluth SP, Leu AO, Evans PN, Woodcroft BJ, Chadwick GL, Orphan VJ, Amend JP, Rappé MS, Tyson GW. Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. The Isme Journal. PMID 30651609 DOI: 10.1038/s41396-018-0343-2  0.32
2018 Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The Isme Journal. PMID 30323263 DOI: 10.1038/s41396-018-0282-y  0.32
2018 Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P. The importance of designating type material for uncultured taxa. Systematic and Applied Microbiology. PMID 30098831 DOI: 10.1016/j.syapm.2018.07.003  0.32
2018 Hoedt EC, Parks DH, Volmer JG, Rosewarne CP, Denman SE, McSweeney CS, Muir JG, Gibson PR, Cuív PÓ, Hugenholtz P, Tyson GW, Morrison M. Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size. The Isme Journal. PMID 30068938 DOI: 10.1038/s41396-018-0225-7  0.32
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/nbt0718-660a  0.96
2018 Cai C, Leu AO, Xie GJ, Guo J, Feng Y, Zhao JX, Tyson GW, Yuan Z, Hu S. A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction. The Isme Journal. PMID 29662147 DOI: 10.1038/s41396-018-0109-x  0.32
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/nbt0218-196a  0.96
2017 Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW. Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology. PMID 29234139 DOI: 10.1038/s41564-017-0083-5  0.32
2017 Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Erratum for Skennerton et al., "Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea". Mbio. 8. PMID 28974619 DOI: 10.1128/mBio.01561-17  0.32
2017 Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology. PMID 28894102 DOI: 10.1038/s41564-017-0012-7  0.32
2017 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/nbt.3893  0.96
2017 Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. Mbio. 8. PMID 28765215 DOI: 10.1128/mBio.00530-17  0.32
2016 Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft BJ, Hugenholtz P, Tyson GW. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nature Microbiology. 1: 16170. PMID 27694807 DOI: 10.1038/nmicrobiol.2016.170  0.32
2016 Robbins SJ, Evans PN, Parks DH, Golding SD, Tyson GW. Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well. Frontiers in Microbiology. 7: 731. PMID 27375557 DOI: 10.3389/fmicb.2016.00731  0.96
2016 Skennerton CT, Haroon MF, Briegel A, Shi J, Jensen GJ, Tyson GW, Orphan VJ. Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps. The Isme Journal. PMID 27058507 DOI: 10.1038/ismej.2016.55  0.96
2016 Angly FE, Pantos O, Morgan TC, Rich V, Tonin H, Bourne DG, Mercurio P, Negri AP, Tyson GW. Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. Peerj. 4: e1758. PMID 26989611 DOI: 10.7717/peerj.1758  0.96
2016 Angly FE, Heath C, Morgan TC, Tonin H, Rich V, Schaffelke B, Bourne DG, Tyson GW. Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. Peerj. 4: e1511. PMID 26839738 DOI: 10.7717/peerj.1511  0.96
2016 Robbins SJ, Evans PN, Esterle JS, Golding SD, Tyson GW. The effect of coal rank on biogenic methane potential and microbial composition International Journal of Coal Geology. 154: 205-212. DOI: 10.1016/j.coal.2016.01.001  0.96
2015 Abdul Rahman N, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P. A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Frontiers in Microbiology. 6: 1469. PMID 26779135 DOI: 10.3389/fmicb.2015.01469  0.96
2015 Kao-Kniffin J, Woodcroft BJ, Carver SM, Bockheim JG, Handelsman J, Tyson GW, Hinkel KM, Mueller CW. Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska. Scientific Reports. 5: 18165. PMID 26681584 DOI: 10.1038/srep18165  0.96
2015 Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. Science (New York, N.Y.). 350: 434-8. PMID 26494757 DOI: 10.1126/science.aac7745  0.96
2015 Barr JJ, Dutilh BE, Skennerton CT, Fukushima T, Hastie ML, Gorman JJ, Tyson GW, Bond PL. Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm. Environmental Microbiology. PMID 26279094 DOI: 10.1111/1462-2920.13019  0.96
2015 Patil SA, Arends JB, Vanwonterghem I, van Meerbergen J, Guo K, Tyson GW, Rabaey K. Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO2. Environmental Science & Technology. 49: 8833-43. PMID 26079858 DOI: 10.1021/es506149d  0.96
2015 Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P. Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. Peerj. 3: e968. PMID 26038723 DOI: 10.7717/peerj.968  0.96
2015 Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Research. 25: 1043-55. PMID 25977477 DOI: 10.1101/gr.186072.114  0.96
2015 Hu S, Zeng RJ, Haroon MF, Keller J, Lant PA, Tyson GW, Yuan Z. A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments. Scientific Reports. 5: 8706. PMID 25732131 DOI: 10.1038/srep08706  0.96
2015 Vanwonterghem I, Jensen PD, Rabaey K, Tyson GW. Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters. Scientific Reports. 5: 8496. PMID 25683239 DOI: 10.1038/srep08496  0.96
2015 Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O. Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix. The Isme Journal. 9: 1916-27. PMID 25668159 DOI: 10.1038/ismej.2015.3  0.96
2015 Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P. First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking. Peerj. 3: e740. PMID 25650158 DOI: 10.7717/peerj.740  0.96
2015 Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR. Chemotaxis by natural populations of coral reef bacteria. The Isme Journal. 9: 1764-77. PMID 25615440 DOI: 10.1038/ismej.2014.261  0.96
2015 Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H. Where next for microbiome research? Plos Biology. 13: e1002050. PMID 25602283 DOI: 10.1371/journal.pbio.1002050  0.96
2015 Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW. Expanding our view of genomic diversity in Candidatus Accumulibacter clades. Environmental Microbiology. 17: 1574-85. PMID 25088527 DOI: 10.1111/1462-2920.12582  0.96
2015 Susilawati R, Evans PN, Esterle JS, Robbins SJ, Tyson GW, Golding SD, Mares TE. Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals International Journal of Coal Geology. 137: 66-76. DOI: 10.1016/j.coal.2014.10.015  0.96
2014 McCalley CK, Woodcroft BJ, Hodgkins SB, Wehr RA, Kim EH, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW, Saleska SR. Methane dynamics regulated by microbial community response to permafrost thaw. Nature. 514: 478-81. PMID 25341787 DOI: 10.1038/nature13798  0.96
2014 Imelfort M, Parks D, Woodcroft BJ, Dennis P, Hugenholtz P, Tyson GW. GroopM: an automated tool for the recovery of population genomes from related metagenomes. Peerj. 2: e603. PMID 25289188 DOI: 10.7717/peerj.603  0.96
2014 Parks DH, Tyson GW, Hugenholtz P, Beiko RG. STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics (Oxford, England). 30: 3123-4. PMID 25061070 DOI: 10.1093/bioinformatics/btu494  0.96
2014 Vanwonterghem I, Jensen PD, Ho DP, Batstone DJ, Tyson GW. Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques. Current Opinion in Biotechnology. 27: 55-64. PMID 24863897 DOI: 10.1016/j.copbio.2013.11.004  0.96
2014 Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW. Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters. The Isme Journal. 8: 2015-28. PMID 24739627 DOI: 10.1038/ismej.2014.50  0.96
2014 Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P. An expanded genomic representation of the phylum cyanobacteria. Genome Biology and Evolution. 6: 1031-45. PMID 24709563 DOI: 10.1093/gbe/evu073  0.96
2014 Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW. CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction. Microbiome. 2: 11. PMID 24708850 DOI: 10.1186/2049-2618-2-11  0.96
2014 Angly FE, Fields CJ, Tyson GW. The Bio-Community Perl toolkit for microbial ecology. Bioinformatics (Oxford, England). 30: 1926-7. PMID 24618462 DOI: 10.1093/bioinformatics/btu130  0.96
2014 De Vrieze J, Gildemyn S, Arends JB, Vanwonterghem I, Verbeken K, Boon N, Verstraete W, Tyson GW, Hennebel T, Rabaey K. Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion. Water Research. 54: 211-21. PMID 24576697 DOI: 10.1016/j.watres.2014.01.044  0.96
2014 Mondav R, Woodcroft BJ, Kim EH, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, VerBerkmoes NC, Saleska SR, Hugenholtz P, Rich VI, Tyson GW. Discovery of a novel methanogen prevalent in thawing permafrost. Nature Communications. 5: 3212. PMID 24526077 DOI: 10.1038/ncomms4212  0.96
2014 Bragg L, Tyson GW. Metagenomics using next-generation sequencing. Methods in Molecular Biology (Clifton, N.J.). 1096: 183-201. PMID 24515370 DOI: 10.1007/978-1-62703-712-9_15  0.96
2013 Pervin HM, Dennis PG, Lim HJ, Tyson GW, Batstone DJ, Bond PL. Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors. Water Research. 47: 7098-108. PMID 24216229 DOI: 10.1016/j.watres.2013.07.053  0.96
2013 Haroon MF, Skennerton CT, Steen JA, Lachner N, Hugenholtz P, Tyson GW. In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery. Methods in Enzymology. 531: 3-19. PMID 24060113 DOI: 10.1016/B978-0-12-407863-5.00001-0  0.96
2013 Dove SG, Kline DI, Pantos O, Angly FE, Tyson GW, Hoegh-Guldberg O. Future reef decalcification under a business-as-usual CO2 emission scenario. Proceedings of the National Academy of Sciences of the United States of America. 110: 15342-7. PMID 24003127 DOI: 10.1073/pnas.1302701110  0.96
2013 Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW. Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature. 500: 567-70. PMID 23892779 DOI: 10.1038/nature12375  0.96
2013 Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotechnology. 31: 533-8. PMID 23707974 DOI: 10.1038/nbt.2579  0.96
2013 Solonenko SA, Ignacio-Espinoza JC, Alberti A, Cruaud C, Hallam S, Konstantinidis K, Tyson G, Wincker P, Sullivan MB. Sequencing platform and library preparation choices impact viral metagenomes. Bmc Genomics. 14: 320. PMID 23663384 DOI: 10.1186/1471-2164-14-320  0.96
2013 Dennis PG, Harnisch F, Yeoh YK, Tyson GW, Rabaey K. Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system. Applied and Environmental Microbiology. 79: 4008-14. PMID 23603684 DOI: 10.1128/AEM.00569-13  0.96
2013 Bragg LM, Stone G, Butler MK, Hugenholtz P, Tyson GW. Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data. Plos Computational Biology. 9: e1003031. PMID 23592973 DOI: 10.1371/journal.pcbi.1003031  0.96
2013 Dennis PG, Seymour J, Kumbun K, Tyson GW. Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients. The Isme Journal. 7: 1661-4. PMID 23514780 DOI: 10.1038/ismej.2013.47  0.96
2013 Skennerton CT, Imelfort M, Tyson GW. Crass: identification and reconstruction of CRISPR from unassembled metagenomic data. Nucleic Acids Research. 41: e105. PMID 23511966 DOI: 10.1093/nar/gkt183  0.96
2013 Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM. Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. Plos One. 8: e56457. PMID 23424661 DOI: 10.1371/journal.pone.0056457  0.96
2013 Dennis PG, Guo K, Imelfort M, Jensen P, Tyson GW, Rabaey K. Spatial uniformity of microbial diversity in a continuous bioelectrochemical system. Bioresource Technology. 129: 599-605. PMID 23313735 DOI: 10.1016/j.biortech.2012.11.098  0.96
2013 Bourne DG, Dennis PG, Uthicke S, Soo RM, Tyson GW, Webster N. Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. The Isme Journal. 7: 1452-8. PMID 23303372 DOI: 10.1038/ismej.2012.172  0.96
2013 Carvalhais LC, Dennis PG, Tyson GW, Schenk PM. Rhizosphere Metatranscriptomics: Challenges and Opportunities Molecular Microbial Ecology of the Rhizosphere. 2: 1137-1144. DOI: 10.1002/9781118297674.ch109  0.96
2012 Carvalhais LC, Dennis PG, Tyson GW, Schenk PM. Application of metatranscriptomics to soil environments. Journal of Microbiological Methods. 91: 246-51. PMID 22963791 DOI: 10.1016/j.mimet.2012.08.011  0.96
2012 Cayford BI, Dennis PG, Keller J, Tyson GW, Bond PL. High-throughput amplicon sequencing reveals distinct communities within a corroding concrete sewer system. Applied and Environmental Microbiology. 78: 7160-2. PMID 22843532 DOI: 10.1128/AEM.01582-12  0.96
2012 Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW. Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nature Methods. 9: 425-6. PMID 22543370 DOI: 10.1038/nmeth.1990  0.96
2012 Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research. 40: e94. PMID 22434876 DOI: 10.1093/nar/gks251  0.96
2011 Skennerton CT, Angly FE, Breitbart M, Bragg L, He S, McMahon KD, Hugenholtz P, Tyson GW. Phage encoded H-NS: a potential achilles heel in the bacterial defence system. Plos One. 6: e20095. PMID 21625595 DOI: 10.1371/journal.pone.0020095  0.96
2011 Angly F, Tyson G. [Are divergent viral communities controlling individual gut microbiota?]. | Des communautés de phages divergentes contrôlent-elles la microflore intestinale ? MéDecine Sciences : M/S. 27: 229-231. PMID 21447285 DOI: 10.1051/medsci/2011273229  0.96
2011 Shi Y, Tyson GW, Eppley JM, DeLong EF. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. The Isme Journal. 5: 999-1013. PMID 21151004 DOI: 10.1038/ismej.2010.189  0.96
2010 Yilmaz S, Haroon MF, Rabkin BA, Tyson GW, Hugenholtz P. Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations. The Isme Journal. 4: 1352-6. PMID 20505753 DOI: 10.1038/ismej.2010.73  0.96
2010 Martinez A, Tyson GW, Delong EF. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environmental Microbiology. 12: 222-38. PMID 19788654 DOI: 10.1111/j.1462-2920.2009.02062.x  0.96
2009 Shi Y, Tyson GW, DeLong EF. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature. 459: 266-9. PMID 19444216 DOI: 10.1038/nature08055  0.96
2009 Baker BJ, Tyson GW, Goosherst L, Banfield JF. Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Applied and Environmental Microbiology. 75: 2192-9. PMID 19201960 DOI: 10.1128/AEM.02500-08  0.96
2008 Hugenholtz P, Tyson GW. Microbiology: metagenomics. Nature. 455: 481-3. PMID 18818648 DOI: 10.1038/455481a  0.96
2008 Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF. Microbial community gene expression in ocean surface waters. Proceedings of the National Academy of Sciences of the United States of America. 105: 3805-10. PMID 18316740 DOI: 10.1073/pnas.0708897105  0.96
2008 Tyson GW, Banfield JF. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environmental Microbiology. 10: 200-7. PMID 17894817 DOI: 10.1111/j.1462-2920.2007.01444.x  0.96
2008 Bender RA, Downs D, Kiley P, LaRossa RA, Sonenshein AL, Storz G, Bender R, Roth J, Schilling C, Rine's J, Merrick M, Tyson G, Skovran E, Liao J, Stephanopolous' G, et al. Bridges cnd Chasms: Summary of the IMAGE 2 meeting in Montreal, Canada, 30 April to 3 May 2007 Journal of Bacteriology. 190: 792-797. PMID 17827302 DOI: 10.1128/JB.01097-07  0.96
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Strainer: software for analysis of population variation in community genomic datasets. Bmc Bioinformatics. 8: 398. PMID 17941997 DOI: 10.1186/1471-2105-8-398  0.96
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 177: 407-16. PMID 17603112 DOI: 10.1534/genetics.107.072892  0.96
2007 Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature. 446: 537-41. PMID 17344860 DOI: 10.1038/nature05624  0.96
2007 Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America. 104: 1883-8. PMID 17267615 DOI: 10.1073/pnas.0604851104  0.96
2006 Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Lineages of acidophilic archaea revealed by community genomic analysis. Science (New York, N.Y.). 314: 1933-5. PMID 17185602 DOI: 10.1126/science.1132690  0.96
2005 Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology. 71: 6319-24. PMID 16204553 DOI: 10.1128/AEM.71.10.6319-6324.2005  0.96
2005 Tyson GW, Banfield JF. Cultivating the uncultivated: a community genomics perspective. Trends in Microbiology. 13: 411-5. PMID 16043355 DOI: 10.1016/j.tim.2005.07.003  0.96
2005 Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield JF. Community proteomics of a natural microbial biofilm. Science (New York, N.Y.). 308: 1915-20. PMID 15879173 DOI: 10.1126/science. 1109070  0.96
2005 Banfield JF, Tyson GW, Allen EE, Whitaker RJ. The search for a molecular-level understanding of the processes that underpin the Earth's biogeochemical cycles Reviews in Mineralogy and Geochemistry. 59: 1-7. DOI: 10.2138/rmg.2005.59.1  0.96
2004 Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/nature02340  0.96
2002 Björnsson L, Hugenholtz P, Tyson GW, Blackall LL. Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology (Reading, England). 148: 2309-18. PMID 12177325 DOI: 10.1099/00221287-148-8-2309  0.96
2002 Hugenholtz P, Tyson GW, Blackall LL. Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization. Methods in Molecular Biology (Clifton, N.J.). 179: 29-42. PMID 11692872  0.96
2001 Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Applied and Environmental Microbiology. 67: 411-9. PMID 11133473 DOI: 10.1128/AEM.67.1.411-419.2001  0.96
Show low-probability matches.