Getiria I. Onsongo, Ph.D. - Publications

2011 Computer Science University of Minnesota, Twin Cities, Minneapolis, MN 
development and application of mass spectrometry-based tools to study proteins and proteomes

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hartman P, Beckman K, Silverstein K, Yohe S, Schomaker M, Henzler C, Onsongo G, Lam HC, Munro S, Daniel J, Billstein B, Deshpande A, Hauge A, Mroz P, Lee W, et al. Next generation sequencing for clinical diagnostics: Five year experience of an academic laboratory. Molecular Genetics and Metabolism Reports. 19: 100464. PMID 30891420 DOI: 10.1016/J.Ymgmr.2019.100464  0.333
2017 Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. An Accessible Proteogenomics Informatics Resource for Cancer Researchers. Cancer Research. 77: e43-e46. PMID 29092937 DOI: 10.1158/0008-5472.Can-17-0331  0.593
2016 Onsongo G, Baughn LB, Bower M, Henzler C, Schomaker M, Silverstein KA, Thyagarajan B. CNV-RF Is a Random Forest-Based Copy Number Variation Detection Method Using Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. PMID 27597741 DOI: 10.1016/J.Jmoldx.2016.07.001  0.305
2016 McGowan T, Johnson J, Jagtap P, Onsongo G, Guerrero C, Griffin T. A multi-omics visualization platform (MVP) plug-in for Galaxy-based applications F1000research. 5. DOI: 10.7490/F1000Research.1112723.1  0.494
2016 Japtap P, Onsongo G, Guerrero C, Johnson J, McGowan T, Andrews M, Griffin T. Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data F1000research. 5. DOI: 10.7490/F1000Research.1112709.1  0.561
2014 Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. Journal of Proteome Research. 13: 5898-908. PMID 25301683 DOI: 10.1021/Pr500812T  0.67
2014 Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. Bmc Genomics. 15: 703. PMID 25149441 DOI: 10.1186/1471-2164-15-703  0.693
2014 Onsongo G, Erdmann J, Spears MD, Chilton J, Beckman KB, Hauge A, Yohe S, Schomaker M, Bower M, Silverstein KA, Thyagarajan B. Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory. Bmc Research Notes. 7: 314. PMID 24885806 DOI: 10.1186/1756-0500-7-314  0.316
2012 Zhang Y, Erdmann J, Chilton J, Onsongo G, Bower M, Beckman K, Thyagarajan B, Silverstein K, Lamblin A. CLIA-certified next-generation sequencing analysis in the cloud Bmc Proceedings. 6: 54. DOI: 10.1186/1753-6561-6-S6-P54  0.341
2010 Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ. Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential. Clinical Proteomics. 6: 75-82. PMID 20930922 DOI: 10.1007/S12014-010-9050-3  0.62
2010 Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ. LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments. Proteomics. 10: 3533-8. PMID 20821806 DOI: 10.1002/Pmic.201000189  0.665
2010 de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ. Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. Plos One. 5: e11148. PMID 20567502 DOI: 10.1371/Journal.Pone.0011148  0.654
2010 Bandhakavi S, Kim YM, Ro SH, Xie H, Onsongo G, Jun CB, Kim DH, Griffin TJ. Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response. Molecular & Cellular Proteomics : McP. 9: 403-14. PMID 19955088 DOI: 10.1074/Mcp.M900326-Mcp200  0.547
2010 Onsongo G, Xie H, Griffin TJ, Carlis JV. Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 25-34. DOI: 10.1145/1854776.1854786  0.654
2009 Bandhakavi S, Stone MD, Onsongo G, Van Riper SK, Griffin TJ. A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva. Journal of Proteome Research. 8: 5590-600. PMID 19813771 DOI: 10.1021/Pr900675W  0.713
2008 Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ. Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 7: 486-98. PMID 18045803 DOI: 10.1074/Mcp.M700146-Mcp200  0.735
2008 Onsongo G, Xie H, Griffin TJ, Carlis J. Generating GO slim using relational database management systems to support proteomics analysis Proceedings - Ieee Symposium On Computer-Based Medical Systems. 215-217. DOI: 10.1109/CBMS.2008.77  0.649
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