| Year |
Citation |
Score |
| 2022 |
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, ... ... Mukherjee S, et al. Expanding the genomic encyclopedia of with 824 isolate reference genomes. Cell Genomics. 2: 100213. PMID 36778052 DOI: 10.1016/j.xgen.2022.100213 |
0.352 |
|
| 2022 |
Camargo AP, Nayfach S, Chen IA, Palaniappan K, Ratner A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S, Schulz F, Call L, Neches RY, Woyke T, Ivanova NN, Eloe-Fadrosh EA, et al. IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. Nucleic Acids Research. PMID 36399502 DOI: 10.1093/nar/gkac1037 |
0.304 |
|
| 2020 |
Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, Wu D, Paez-Espino D, Chen IM, Huntemann M, Palaniappan K, Ladau J, Mukherjee S, Reddy TBK, Nielsen T, et al. A genomic catalog of Earth's microbiomes. Nature Biotechnology. PMID 33169036 DOI: 10.1038/s41587-020-0718-6 |
0.311 |
|
| 2019 |
Camargo AP, de Souza RSC, de Britto Costa P, Gerhardt IR, Dante RA, Teodoro GS, Abrahão A, Lambers H, Carazzolle MF, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, ... ... Mukherjee S, et al. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Scientific Data. 6: 140. PMID 31366912 DOI: 10.1038/S41597-019-0141-3 |
0.318 |
|
| 2018 |
Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Katta HY, Mojica A, Chen IA, Kyrpides NC, Reddy T. Genomes OnLine database (GOLD) v.7: updates and new features. Nucleic Acids Research. PMID 30357420 DOI: 10.1093/Nar/Gky977 |
0.348 |
|
| 2018 |
Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M. Corrigendum: Genome-Based Taxonomic Classification of. Frontiers in Microbiology. 9: 304. PMID 29491863 DOI: 10.3389/Fmicb.2018.00304 |
0.315 |
|
| 2018 |
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life Nature Biotechnology. 36: 368-368. DOI: 10.1038/Nbt0418-368C |
0.303 |
|
| 2017 |
Yassin AF, Langenberg S, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Woyke T, Kyrpides NC. Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence. Plos One. 12: e0188914. PMID 29216246 DOI: 10.1371/Journal.Pone.0188914 |
0.429 |
|
| 2017 |
Choi DH, Jang GI, Lapidus A, Copeland A, Reddy TBK, Mukherjee S, Huntemann M, Varghese N, Ivanova N, Pillay M, Tindall BJ, Göker M, Woyke T, Klenk HP, Kyrpides NC, et al. Draft genome sequence of Marinobacterium rhizophilum CL-YJ9(T) (DSM 18822(T)), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica. Standards in Genomic Sciences. 12: 65. PMID 29093768 DOI: 10.1186/S40793-017-0275-X |
0.414 |
|
| 2017 |
Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, et al. Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast. Genome Announcements. 5. PMID 28860240 DOI: 10.1128/Genomea.00837-17 |
0.366 |
|
| 2017 |
Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, et al. Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample. Genome Announcements. 5. PMID 28798189 DOI: 10.1128/Genomea.00796-17 |
0.355 |
|
| 2017 |
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/Nbt.3886 |
0.427 |
|
| 2017 |
Rice MC, Norton JM, Stein LY, Kozlowski J, Bollmann A, Klotz MG, Sayavedra-Soto L, Shapiro N, Goodwin LA, Huntemann M, Clum A, Pillay M, Varghese N, Mikhailova N, Palaniappan K, ... ... Mukherjee S, et al. Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters. Genome Announcements. 5. PMID 28302769 DOI: 10.1128/Genomea.00011-17 |
0.355 |
|
| 2016 |
Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M. Genome-Based Taxonomic Classification of Bacteroidetes. Frontiers in Microbiology. 7: 2003. PMID 28066339 DOI: 10.3389/Fmicb.2016.02003 |
0.431 |
|
| 2016 |
Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Verezemska O, Isbandi M, Thomas AD, Ali R, Sharma K, Kyrpides NC, Reddy TB. Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Nucleic Acids Research. PMID 27794040 DOI: 10.1093/Nar/Gkw992 |
0.378 |
|
| 2015 |
Mukherjee S, Huntemann M, Ivanova N, Kyrpides NC, Pati A. Large-scale contamination of microbial isolate genomes by Illumina PhiX control. Standards in Genomic Sciences. 10: 18. PMID 26203331 DOI: 10.1186/1944-3277-10-18 |
0.415 |
|
| 2015 |
Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy T, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Göker M, Markowitz V, Woyke T, et al. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India. Standards in Genomic Sciences. 10: 8. PMID 26203325 DOI: 10.1186/1944-3277-10-8 |
0.383 |
|
| 2015 |
Varghese NJ, Mukherjee S, Ivanova N, Konstantinidis KT, Mavrommatis K, Kyrpides NC, Pati A. Microbial species delineation using whole genome sequences. Nucleic Acids Research. 43: 6761-71. PMID 26150420 DOI: 10.1093/Nar/Gkv657 |
0.376 |
|
| 2015 |
Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, et al. Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels. Plos One. 10: e0118285. PMID 26035711 DOI: 10.1371/Journal.Pone.0118285 |
0.574 |
|
| 2015 |
Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... Mukherjee S, et al. Combined Measurement of the Higgs Boson Mass in pp Collisions at sqrt[s]=7 and 8 TeV with the ATLAS and CMS Experiments. Physical Review Letters. 114: 191803. PMID 26024162 DOI: 10.1103/Physrevlett.114.191803 |
0.384 |
|
| 2014 |
Mukherjee S, Thompson LK, Godin S, Schackwitz W, Lipzen A, Martin J, Blanchard JL. Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans. Plos One. 9: e86731. PMID 24466216 DOI: 10.1371/Journal.Pone.0086731 |
0.527 |
|
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