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Jana Sefcikova, Ph.D. - Publications

Affiliations: 
2006 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
structure-function relationships in non-coding (nc)RNAs using single molecule tools and then utilize them for biomedical, bioanalytical and nanotechnological applications
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Morse M, Sefcikova J, Rouzina I, Beuning PJ, Williams MC. Structural domains of SARS-CoV-2 nucleocapsid protein coordinate to compact long nucleic acid substrates. Nucleic Acids Research. PMID 36533523 DOI: 10.1093/nar/gkac1179  0.3
2019 Stern HR, Sefcikova J, Chaparro VE, Beuning PJ. Mammalian DNA Polymerase Kappa Activity and Specificity. Molecules (Basel, Switzerland). 24. PMID 31374881 DOI: 10.3390/Molecules24152805  0.374
2017 Sefcikova J, Roth M, Yu G, Li H. Cas6 processes tight and relaxed repeat RNA via multiple mechanisms: A hypothesis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28493337 DOI: 10.1002/Bies.201700019  0.344
2015 Hawver LA, Tehrani M, Antczak NM, Kania D, Muser S, Sefcikova J, Beuning PJ. Point mutations in Escherichia coli DNA pol V that confer resistance to non-cognate DNA damage also alter protein-protein interactions. Mutation Research. 780: 1-14. PMID 26218456 DOI: 10.1016/J.Mrfmmm.2015.07.003  0.356
2013 Pant K, Nimitpattana S, Silva MC, Sefcikova J, Beuning PJ, Williams MC. Simultaneous Interaction of E. Coli Single Stranded DNA Binding Protein and Replicativedna Polymerase III Alpha Subunit with Single-Stranded DNA Molecules Biophysical Journal. 104: 74a. DOI: 10.1016/J.Bpj.2012.11.447  0.352
2011 Han GW, Ko J, Farr CL, Deller MC, Xu Q, Chiu HJ, Miller MD, Sefcikova J, Somarowthu S, Beuning PJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, et al. Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity. Proteins. 79: 2146-60. PMID 21538547 DOI: 10.1002/Prot.23035  0.477
2010 Beuning PJ, Fang J, Sefcikova J, Silva MC, Engen JR. The Dynamic DNA Damage Inducible Protein UmuD Inhibits Replication Biophysical Journal. 98: 64a. DOI: 10.1016/J.Bpj.2009.12.363  0.386
2009 Beuning PJ, Fang JS, Sefcikova J, Engen JR. Regulation Of The DNA Damage Response By The DNA Polymerase Manager Protein UmuD Biophysical Journal. 96: 342a. DOI: 10.1016/J.Bpj.2008.12.1718  0.367
2009 Sefcikova J, Malcho J, Foley K, Beuning P. Quantitative Characterization of Interactions of the Escherichia Coli SOS DNA Damage Response Proteins UmuD and UmuD' with the Replicative DNA Polymerase Biophysical Journal. 96: 341a-342a. DOI: 10.1016/J.Bpj.2008.12.1714  0.37
2008 McCauley MJ, Shokri L, Sefcikova J, Venclovas C, Beuning PJ, Williams MC. Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit. Acs Chemical Biology. 3: 577-87. PMID 18652472 DOI: 10.1021/Cb8001107  0.367
2007 Sefcikova J, Krasovska MV, Sponer J, Walter NG. The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis. Nucleic Acids Research. 35: 1933-46. PMID 17337436 DOI: 10.1093/Nar/Gkl1104  0.669
2007 Sefcikova J, Krasovska MV, Spacková N, Sponer J, Walter NG. Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme. Biopolymers. 85: 392-406. PMID 17253610 DOI: 10.1002/Bip.20693  0.671
2006 Krasovska MV, Sefcikova J, Réblová K, Schneider B, Walter NG, Sponer J. Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme. Biophysical Journal. 91: 626-38. PMID 16617077 DOI: 10.1529/Biophysj.105.079368  0.644
2005 Krasovska MV, Sefcikova J, Spacková N, Sponer J, Walter NG. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations. Journal of Molecular Biology. 351: 731-48. PMID 16045932 DOI: 10.1016/J.Jmb.2005.06.016  0.627
2003 Jeong S, Sefcikova J, Tinsley RA, Rueda D, Walter NG. Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5' substrate sequence. Biochemistry. 42: 7727-40. PMID 12820882 DOI: 10.1021/Bi034627G  0.438
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