Year |
Citation |
Score |
2020 |
Ganguly A, Weissman BP, Giese TJ, Li NS, Hoshika S, Rao S, Benner SA, Piccirilli JA, York DM. Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme. Nature Chemistry. PMID 31959957 DOI: 10.1038/S41557-019-0391-X |
0.417 |
|
2019 |
Ganguly A, Weissman BP, Piccirilli JA, York DM. Evidence for a Catalytic Strategy to Promote Nucleophile Activation in Metal-Dependent RNA-Cleaving Ribozymes and 8-17 DNAzyme. Acs Catalysis. 9: 10612-10617. PMID 31840007 DOI: 10.1021/Acscatal.9B02035 |
0.455 |
|
2019 |
Bevilacqua PC, Harris ME, Piccirilli JA, Gaines C, Ganguly A, Kostenbader K, Ekesan Ş, York DM. An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes. Acs Chemical Biology. PMID 31095369 DOI: 10.1021/Acschembio.9B00202 |
0.33 |
|
2017 |
Ganguly A, Luong TQ, Brylski O, Dirkmann M, Möller D, Ebbinghaus S, Schulz F, Winter R, Sanchez-Garcia E, Thiel W. Elucidation of the Catalytic Mechanism of a Miniature Zinc Finger Hydrolase. The Journal of Physical Chemistry. B. PMID 28648071 DOI: 10.1021/Acs.Jpcb.7B05027 |
0.428 |
|
2017 |
Ganguly A, Thiel W, Crane BR. A glutamine amide flip elicits long distance allosteric responses in the LOV protein Vivid. Journal of the American Chemical Society. PMID 28145707 DOI: 10.1021/Jacs.6B10701 |
0.346 |
|
2016 |
Ganguly A, Manahan CC, Top D, Yee EF, Lin C, Young MW, Thiel W, Crane BR. Changes in active site histidine hydrogen bonding trigger cryptochrome activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27551082 DOI: 10.1073/Pnas.1606610113 |
0.36 |
|
2015 |
Thaplyal P, Ganguly A, Hammes-Schiffer S, Bevilacqua PC. Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density. Biochemistry. 54: 2160-75. PMID 25799319 DOI: 10.1021/Acs.Biochem.5B00190 |
0.63 |
|
2015 |
Zhang S, Ganguly A, Goyal P, Bingaman JL, Bevilacqua PC, Hammes-Schiffer S. Role of the active site guanine in the glmS ribozyme self-cleavage mechanism: quantum mechanical/molecular mechanical free energy simulations. Journal of the American Chemical Society. 137: 784-98. PMID 25526516 DOI: 10.1021/Ja510387Y |
0.631 |
|
2014 |
Ganguly A, Thaplyal P, Rosta E, Bevilacqua PC, Hammes-Schiffer S. Quantum mechanical/molecular mechanical free energy simulations of the self-cleavage reaction in the hepatitis delta virus ribozyme. Journal of the American Chemical Society. 136: 1483-96. PMID 24383543 DOI: 10.1021/Ja4104217 |
0.665 |
|
2013 |
Thaplyal P, Ganguly A, Golden BL, Hammes-Schiffer S, Bevilacqua PC. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme. Biochemistry. 52: 6499-514. PMID 24001219 DOI: 10.1021/Bi4000673 |
0.611 |
|
2013 |
Chen J, Ganguly A, Miswan Z, Hammes-Schiffer S, Bevilacqua PC, Golden BL. Identification of the catalytic Mg²⺠ion in the hepatitis delta virus ribozyme. Biochemistry. 52: 557-67. PMID 23311293 DOI: 10.1021/Bi3013092 |
0.647 |
|
2011 |
Ganguly A, Bevilacqua PC, Hammes-Schiffer S. Quantum Mechanical/Molecular Mechanical Study of the HDV Ribozyme: Impact of the Catalytic Metal Ion on the Mechanism. The Journal of Physical Chemistry Letters. 2: 2906-2911. PMID 22163069 DOI: 10.1021/Jz2013215 |
0.657 |
|
2011 |
Veeraraghavan N, Ganguly A, Golden BL, Bevilacqua PC, Hammes-Schiffer S. Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation. The Journal of Physical Chemistry. B. 115: 8346-57. PMID 21644800 DOI: 10.1021/Jp203202E |
0.69 |
|
2011 |
Veeraraghavan N, Ganguly A, Chen JH, Bevilacqua PC, Hammes-Schiffer S, Golden BL. Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions. Biochemistry. 50: 2672-82. PMID 21348498 DOI: 10.1021/Bi2000164 |
0.694 |
|
2009 |
Agarwal M, Ganguly A, Chakravarty C. Transport properties of tetrahedral, network-forming ionic melts. The Journal of Physical Chemistry. B. 113: 15284-92. PMID 19860439 DOI: 10.1021/Jp903694B |
0.331 |
|
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