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Yamini Dalal, Ph.D. - Related publications

Center for Cancer Research National Cancer Institute, Rockville, MD, United States 
 2003 Purdue University, West Lafayette, IN, United States 
gene regulation
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Du W, Pan D, Xiang P, Xiong C, Zhang M, Zhang Q, Tian Y, Zhang Z, Chen B, Luo K, Gong Q, Tian X. Terpyridine Zn(II) Complexes with Azide Units for Visualization of Histone Deacetylation in Living Cells under STED Nanoscopy. Acs Sensors. PMID 34498846 DOI: 10.1021/acssensors.1c01287   
2021 Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR. Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails. Nature Communications. 12: 5280. PMID 34489435 DOI: 10.1038/s41467-021-25568-6   
2021 Jing Y, Tian G, Qin X, Liu Z, Li XD. Lysine succinylation on non-histone chromosomal protein HMG-17 (HMGN2) regulates nucleosomal DNA accessibility by disrupting the HMGN2-nucleosome association. Rsc Chemical Biology. 2: 1257-1262. PMID 34458839 DOI: 10.1039/d1cb00070e   
2021 Morgunova E, Taipale J. Structural insights into the interaction between transcription factors and the nucleosome. Current Opinion in Structural Biology. 71: 171-179. PMID 34364091 DOI: 10.1016/   
2021 Mohan C, Das C, Tyler J. Histone and Chromatin Dynamics Facilitating DNA repair. Dna Repair. 107: 103183. PMID 34419698 DOI: 10.1016/j.dnarep.2021.103183   
2021 Arimura Y, Shih RM, Froom R, Funabiki H. Structural features of nucleosomes in interphase and metaphase chromosomes. Molecular Cell. PMID 34478647 DOI: 10.1016/j.molcel.2021.08.010   
2021 Van Rechem C, Ji F, Chakraborty D, Black JC, Sadreyev RI, Whetstine JR. Collective regulation of chromatin modifications predicts replication timing during cell cycle. Cell Reports. 37: 109799. PMID 34610305 DOI: 10.1016/j.celrep.2021.109799   
2021 Shoaib M, Chen Q, Shi X, Nair N, Prasanna C, Yang R, Walter D, Frederiksen KS, Einarsson H, Svensson JP, Liu CF, Ekwall K, Lerdrup M, Nordenskiöld L, Sørensen CS. Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes. Nature Communications. 12: 4800. PMID 34417450 DOI: 10.1038/s41467-021-25051-2   
2021 Zhou Z, Yan R, Jiang W, Irudayaraj JMK. Chromatin hierarchical branching visualized at the nanoscale by electron microscopy. Nanoscale Advances. 3: 1019-1028. PMID 34381959 DOI: 10.1039/d0na00359j   
2021 Beel AJ, Azubel M, Matteï PJ, Kornberg RD. Structure of mitotic chromosomes. Molecular Cell. PMID 34520722 DOI: 10.1016/j.molcel.2021.08.020   
2021 Fu I, Geacintov NE, Broyde S. Molecular dynamics simulations reveal how H3K56 acetylation impacts nucleosome structure to promote DNA exposure for lesion sensing. Dna Repair. 107: 103201. PMID 34399316 DOI: 10.1016/j.dnarep.2021.103201   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Staneva DP, Carloni R, Auchynnikava T, Tong P, Arulanandam JA, Rappsilber J, Matthews KR, Allshire RC. A systematic analysis of chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination. Genome Research. PMID 34407985 DOI: 10.1101/gr.275368.121   
2021 Wu MS, Li XJ, Liu CY, Xu Q, Huang JQ, Gu S, Chen JX. Effects of histone modification in major depressive disorder. Current Neuropharmacology. PMID 34551699 DOI: 10.2174/1570159X19666210922150043   
2021 Fang K, Li T, Huang Y, Jin VX. NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentiality. Genome Biology. 22: 250. PMID 34446075 DOI: 10.1186/s13059-021-02465-1   
2021 Hai R, He L, Shu G, Yin G. Characterization of Histone Deacetylase Mechanisms in Cancer Development. Frontiers in Oncology. 11: 700947. PMID 34395273 DOI: 10.3389/fonc.2021.700947   
2021 Yang Y, Luan Y, Yuan RX, Luan Y. Histone Methylation Related Therapeutic Challenge in Cardiovascular Diseases. Frontiers in Cardiovascular Medicine. 8: 710053. PMID 34568453 DOI: 10.3389/fcvm.2021.710053   
2021 Fulton MD, Cao M, Ho MC, Zhao X, Zheng YG. The Macromolecular Complexes of Histones Affect Protein Arginine Methyltransferase Activities. The Journal of Biological Chemistry. 101123. PMID 34492270 DOI: 10.1016/j.jbc.2021.101123   
2021 Zhang J, Lu X, MoghaddamKohi S, Shi L, Xu X, Zhu WG. Histone lysine modifying enzymes and their critical roles in DNA double-strand break repair. Dna Repair. 107: 103206. PMID 34411909 DOI: 10.1016/j.dnarep.2021.103206   
2021 Lövkvist C, Mikulski P, Reeck S, Hartley M, Dean C, Howard M. Hybrid protein assembly-histone modification mechanism for PRC2-based epigenetic switching and memory. Elife. 10. PMID 34473050 DOI: 10.7554/eLife.66454   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Tian H, Yang J, Guo AD, Ran Y, Yang YZ, Yang B, Huang R, Liu H, Chen XH. Genetically Encoded Benzoyllysines Serve as Versatile Probes for Interrogating Histone Benzoylation and Interactions in Living Cells. Acs Chemical Biology. PMID 34618427 DOI: 10.1021/acschembio.1c00614   
2021 Dong Q, Yang J, Gao J, Li F. Recent insights into mechanisms preventing ectopic centromere formation. Open Biology. 11: 210189. PMID 34493071 DOI: 10.1098/rsob.210189   
2021 Sudhamalla B, Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S. Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain. Chemistry, An Asian Journal. PMID 34448544 DOI: 10.1002/asia.202100793   
2021 Yoneda M, Yasui K, Nakagawa T, Hattori N, Ito T. Nucleosome assembly protein 1 (NAP-1) is a regulator of histone H1 acetylation. Journal of Biochemistry. PMID 34551067 DOI: 10.1093/jb/mvab098   
2021 Mashtalir N, Dao HT, Sankar A, Liu H, Corin AJ, Bagert JD, Ge EJ, D'Avino AR, Filipovski M, Michel BC, Dann GP, Muir TW, Kadoch C. Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes. Science (New York, N.Y.). 373: 306-315. PMID 34437148 DOI: 10.1126/science.abf8705   
2021 Zhang X, Wang T. Plant 3-D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years. Plant & Cell Physiology. PMID 34486654 DOI: 10.1093/pcp/pcab134   
2021 Sinha S, Molla S, Kundu CN. PARP1-modulated chromatin remodeling is a new target for cancer treatment. Medical Oncology (Northwood, London, England). 38: 118. PMID 34432161 DOI: 10.1007/s12032-021-01570-2   
2021 Ortega P, Gómez-González B, Aguilera A. Heterogeneity of DNA damage incidence and repair in different chromatin contexts. Dna Repair. 107: 103210. PMID 34416542 DOI: 10.1016/j.dnarep.2021.103210   
2021 Wang T, Perazza D, Boussouar F, Cattaneo M, Bougdour A, Chuffart F, Barral S, Vargas A, Liakopoulou A, Puthier D, Bargier L, Morozumi Y, Jamshidikia M, Garcia-Saez I, Petosa C, et al. ATAD2 controls chromatin-bound HIRA turnover. Life Science Alliance. 4. PMID 34580178 DOI: 10.26508/lsa.202101151   
2021 Dolan C, Miller T, Jill J, Terrell J, Kelly TK, Bygott T, Wilson-Robles H. Characterizing circulating nucleosomes in the plasma of dogs with lymphoma. Bmc Veterinary Research. 17: 276. PMID 34399763 DOI: 10.1186/s12917-021-02991-x   
2021 Cao F, Zhang Y, Cai Y, Animesh S, Zhang Y, Akincilar SC, Loh YP, Li X, Chng WJ, Tergaonkar V, Kwoh CK, Fullwood MJ. Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences. Genome Biology. 22: 226. PMID 34399797 DOI: 10.1186/s13059-021-02453-5   
2021 Chacin E, Bansal P, Reusswig KU, Diaz-Santin LM, Ortega P, Vizjak P, Gómez-González B, Müller-Planitz F, Aguilera A, Pfander B, Cheung ACM, Kurat CF. A CDK-regulated chromatin segregase promoting chromosome replication. Nature Communications. 12: 5224. PMID 34471130 DOI: 10.1038/s41467-021-25424-7   
2021 Thakre PK, Sahu RK, Tomar RS. Substitution of histone H3 arginine 72 to alanine leads to deregulation of isoleucine biosynthesis in budding yeast Saccharomyces cerevisiae. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 33843274 DOI: 10.1139/bcb-2020-0651   
2021 Rippe K. Liquid-Liquid Phase Separation in Chromatin. Cold Spring Harbor Perspectives in Biology. PMID 34127447 DOI: 10.1101/cshperspect.a040683   
2021 Tamburri S, Conway E, Pasini D. Polycomb-dependent histone H2A ubiquitination links developmental disorders with cancer. Trends in Genetics : Tig. PMID 34426021 DOI: 10.1016/j.tig.2021.07.011   
2021 Gao Y, Han M, Shang S, Wang H, Qi LS. Interrogation of the dynamic properties of higher-order heterochromatin using CRISPR-dCas9. Molecular Cell. PMID 34428454 DOI: 10.1016/j.molcel.2021.07.034   
2021 Barnes T, Korber P. The Active Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts In Vivo. International Journal of Molecular Sciences. 22. PMID 34360997 DOI: 10.3390/ijms22158233   
2021 Yan H, Surovtsev I, Williams JF, Bailey MLP, King MC, Mochrie SGJ. Extrusion of chromatin loops by a composite loop extrusion factor. Physical Review. E. 104: 024414. PMID 34525654 DOI: 10.1103/PhysRevE.104.024414   
2021 Jos S, Gogoi H, Prasad TK, Hurakadli MA, Kamariah N, Padmanabhan B, Padavattan S. Molecular insights into α-synuclein interaction with individual human core histones, linker histone, and dsDNA. Protein Science : a Publication of the Protein Society. 30: 2121-2131. PMID 34382268 DOI: 10.1002/pro.4167   
2021 Leo L, Colonna Romano N. Emerging Single-Cell Technological Approaches to Investigate Chromatin Dynamics and Centromere Regulation in Human Health and Disease. International Journal of Molecular Sciences. 22. PMID 34445507 DOI: 10.3390/ijms22168809   
2021 Park TL, Lee Y, Cho WK. Visualization of chromatin higher-order structures and dynamics in live cells. Bmb Reports. PMID 34488934   
2021 Zheng W, Tasselli L, Li TM, Chua KF. Mammalian SIRT6 Represses Invasive Cancer Cell Phenotypes through ATP Citrate Lyase (ACLY)-Dependent Histone Acetylation. Genes. 12. PMID 34573442 DOI: 10.3390/genes12091460   
2021 Tan Z, Li T, Lei H, Zhai X. An update on allosteric modulators as a promising strategy targeting histone methyltransferase. Pharmacological Research. 105865. PMID 34474102 DOI: 10.1016/j.phrs.2021.105865   
2021 Sato H, Santos-González J, Köhler C. Combinations of maternal-specific repressive epigenetic marks in the endosperm control seed dormancy. Elife. 10. PMID 34427186 DOI: 10.7554/eLife.64593   
2021 Zhang S, Zhan L, Li X, Yang Z, Luo Y, Zhao H. Preclinical and clinical progress for HDAC as a putative target for epigenetic remodeling and functionality of immune cells. International Journal of Biological Sciences. 17: 3381-3400. PMID 34512154 DOI: 10.7150/ijbs.62001   
2021 Guttzeit S, Backs J. Post-translational modifications talk and crosstalk to class IIa histone deacetylases. Journal of Molecular and Cellular Cardiology. PMID 34416247 DOI: 10.1016/j.yjmcc.2021.08.007   
2021 Sun H, Wang Y, Wang Y, Ji F, Wang A, Yang M, He X, Li L. Bivalent Regulation and Related Mechanisms of H3K4/27/9me3 in Stem Cells. Stem Cell Reviews and Reports. PMID 34417934 DOI: 10.1007/s12015-021-10234-7   
2021 Sears TK, Horbinski CM, Woolard KD. IDH1 mutant glioma is preferentially sensitive to the HDAC inhibitor panobinostat. Journal of Neuro-Oncology. PMID 34424450 DOI: 10.1007/s11060-021-03829-0   
2021 Deng Q, Lu H, Wu M, Ran M, Wang Z, Wei D, Tang Q. [Molecular mechanisms of RPD3 family members in regulating plant development and environmental responses]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2645-2657. PMID 34472285 DOI: 10.13345/j.cjb.200534