Harsha P. Gunawardena, Ph.D. - Publications

Affiliations: 
2006 Purdue University, West Lafayette, IN, United States 
Area:
mass spectrometry

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Bowers JJ, Gunawardena HP, Cornu A, Narvekar AS, Richieu A, Deffieux D, Quideau S, Tharayil N. Rapid Screening of Ellagitannins in Natural Sources via Targeted Reporter Ion Triggered Tandem Mass Spectrometry. Scientific Reports. 8: 10399. PMID 29991731 DOI: 10.1038/s41598-018-27708-3  0.8
2015 Tabb DL, Wang X, Carr SA, Clauser KR, Mertins P, Chambers MC, Holman JD, Wang J, Zhang B, Zimmerman LJ, Chen X, Gunawardena HP, Davies SR, Ellis MJ, Li S, et al. Reproducibility of differential proteomic technologies in CPTAC fractionated xenografts. Journal of Proteome Research. PMID 26653538 DOI: 10.1021/acs.jproteome.5b00859  1
2015 Ruggles KV, Tang Z, Wang X, Grover H, Askenazi M, Teubl J, Cao S, McLellan MD, Clauser KR, Tabb DL, Mertins P, Slebos R, Erdmann-Gilmore P, Li S, Gunawardena HP, et al. An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer. Molecular & Cellular Proteomics : McP. PMID 26631509 DOI: 10.1074/mcp.M115.056226  1
2015 Gunawardena HP, Brien JO, Wrobel JA, Xie L, Davies SR, Li S, Ellis MJ, Qaqish BF, Chen X. QuantFusion: Novel Unified Methodology for Enhanced Coverage and Precision in Quantifying Global Proteomic Changes in Whole Tissues. Molecular & Cellular Proteomics : McP. PMID 26598639 DOI: 10.1074/mcp.O115.049791  1
2015 Feltcher ME, Gunawardena HP, Zulauf KE, Malik S, Griffin JE, Sassetti CM, Chen X, Braunstein M. Label-free Quantitative Proteomics Reveals a Role for the Mycobacterium tuberculosis SecA2 Pathway in Exporting Solute Binding Proteins and Mce Transporters to the Cell Wall. Molecular & Cellular Proteomics : McP. 14: 1501-16. PMID 25813378 DOI: 10.1074/mcp.M114.044685  1
2015 Hobbs GA, Mitchell LE, Arrington ME, Gunawardena HP, DeCristo MJ, Loeser RF, Chen X, Cox AD, Campbell SL. Redox regulation of Rac1 by thiol oxidation. Free Radical Biology & Medicine. 79: 237-50. PMID 25289457 DOI: 10.1016/j.freeradbiomed.2014.09.027  1
2014 Liu C, Yu Y, Liu F, Wei X, Wrobel JA, Gunawardena HP, Zhou L, Jin J, Chen X. A chromatin activity-based chemoproteomic approach reveals a transcriptional repressome for gene-specific silencing. Nature Communications. 5: 5733. PMID 25502336 DOI: 10.1038/ncomms6733  1
2014 Alzate O, Osorio C, DeKroon RM, Corcimaru A, Gunawardena HP. Differentially charged isoforms of apolipoprotein E from human blood are potential biomarkers of Alzheimer's disease. Alzheimer's Research & Therapy. 6: 43. PMID 25478016 DOI: 10.1186/alzrt273  1
2013 Gunawardena HP, Feltcher ME, Wrobel JA, Gu S, Braunstein M, Chen X. Comparison of the membrane proteome of virulent Mycobacterium tuberculosis and the attenuated Mycobacterium bovis BCG vaccine strain by label-free quantitative proteomics. Journal of Proteome Research. 12: 5463-74. PMID 24093440 DOI: 10.1021/pr400334k  1
2013 Meckes DG, Gunawardena HP, Dekroon RM, Heaton PR, Edwards RH, Ozgur S, Griffith JD, Damania B, Raab-Traub N. Modulation of B-cell exosome proteins by gamma herpesvirus infection. Proceedings of the National Academy of Sciences of the United States of America. 110: E2925-33. PMID 23818640 DOI: 10.1073/pnas.1303906110  1
2013 Khatun J, Yu Y, Wrobel JA, Risk BA, Gunawardena HP, Secrest A, Spitzer WJ, Xie L, Wang L, Chen X, Giddings MC. Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions. Bmc Genomics. 14: 141. PMID 23448259 DOI: 10.1186/1471-2164-14-141  1
2013 Xie L, Liu C, Wang L, Gunawardena HP, Yu Y, Du R, Taxman DJ, Dai P, Yan Z, Yu J, Holly SP, Parise LV, Wan YY, Ting JP, Chen X. Protein phosphatase 2A catalytic subunit α plays a MyD88-dependent, central role in the gene-specific regulation of endotoxin tolerance. Cell Reports. 3: 678-88. PMID 23434512 DOI: 10.1016/j.celrep.2013.01.029  1
2013 Hayden JD, Brown LR, Gunawardena HP, Perkowski EF, Chen X, Braunstein M. Reversible acetylation regulates acetate and propionate metabolism in Mycobacterium smegmatis Microbiology (United Kingdom). 159: 1986-1999. DOI: 10.1099/mic.0.068585-0  1
2012 Yu Y, Xie L, Gunawardena HP, Khatun J, Maier C, Spitzer W, Leerkes M, Giddings MC, Chen X. GOFAST: an integrated approach for efficient and comprehensive membrane proteome analysis. Analytical Chemistry. 84: 9008-14. PMID 23030679 DOI: 10.1021/ac300134e  1
2012 Bánfai B, Jia H, Khatun J, Wood E, Risk B, Gundling WE, Kundaje A, Gunawardena HP, Yu Y, Xie L, Krajewski K, Strahl BD, Chen X, Bickel P, Giddings MC, et al. Long noncoding RNAs are rarely translated in two human cell lines. Genome Research. 22: 1646-57. PMID 22955977 DOI: 10.1101/gr.134767.111  1
2012 Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, ... ... Gunawardena H, et al. Landscape of transcription in human cells. Nature. 489: 101-8. PMID 22955620 DOI: 10.1038/nature11233  1
2012 Lee YY, Yu YB, Gunawardena HP, Xie L, Chen X. BCLAF1 is a radiation-induced H2AX-interacting partner involved in γH2AX-mediated regulation of apoptosis and DNA repair. Cell Death & Disease. 3: e359. PMID 22833098 DOI: 10.1038/cddis.2012.76  1
2012 Cable J, Prutzman K, Gunawardena HP, Schaller MD, Chen X, Campbell SL. In vitro phosphorylation of the focal adhesion targeting domain of focal adhesion kinase by Src kinase. Biochemistry. 51: 2213-23. PMID 22372511 DOI: 10.1021/bi300123a  1
2011 Gunawardena HP, Huang Y, Kenjale R, Wang H, Xie L, Chen X. Unambiguous characterization of site-specific phosphorylation of leucine-rich repeat Fli-I-interacting protein 2 (LRRFIP2) in Toll-like receptor 4 (TLR4)-mediated signaling. The Journal of Biological Chemistry. 286: 10897-910. PMID 21220426 DOI: 10.1074/jbc.M110.168179  1
2011 Huang Y, Shi Q, Tsung CK, Gunawardena HP, Xie L, Yu Y, Liang H, Yang P, Stucky GD, Chen X. An optimized magnetite microparticle-based phosphopeptide enrichment strategy for identifying multiple phosphorylation sites in an immunoprecipitated protein Analytical Biochemistry. 408: 19-31. PMID 20696126 DOI: 10.1016/j.ab.2010.08.002  1
2008 Bowers JJ, Liu J, Gunawardena HP, McLuckey SA. Protein identification via ion-trap collision-induced dissociation and examination of low-mass product ions. Journal of Mass Spectrometry : Jms. 43: 23-34. PMID 17613176 DOI: 10.1002/jms.1263  1
2008 Liu J, Gunawardena HP, Huang TY, McLuckey SA. Charge-dependent dissociation of insulin cations via ion/ion electron transfer International Journal of Mass Spectrometry. 276: 160-170. DOI: 10.1016/j.ijms.2008.07.028  1
2007 Xia Y, Gunawardena HP, Erickson DE, McLuckey SA. Effects of cation charge-site identity and position on electron-transfer dissociation of polypeptide cations. Journal of the American Chemical Society. 129: 12232-43. PMID 17880074 DOI: 10.1021/ja0736764  1
2007 Gunawardena HP, Gorenstein L, Erickson DE, Xia Y, McLuckey SA. Electron transfer dissociation of multiply protonated and fixed charge disulfide linked polypeptides International Journal of Mass Spectrometry. 265: 130-138. DOI: 10.1016/j.ijms.2007.01.017  1
2006 Gunawardena HP, O'Hair RA, McLuckey SA. Selective disulfide bond cleavage in gold(I) cationized polypeptide ions formed via gas-phase ion/ion cation switching. Journal of Proteome Research. 5: 2087-92. PMID 16944919 DOI: 10.1021/pr0602794  1
2006 Gunawardena HP, Emory JF, McLuckey SA. Phosphopeptide anion characterization via sequential charge inversion and electron-transfer dissociation. Analytical Chemistry. 78: 3788-93. PMID 16737238 DOI: 10.1021/ac060164j  1
2005 Gunawardena HP, He M, Chrisman PA, Pitteri SJ, Hogan JM, Hodges BD, McLuckey SA. Electron transfer versus proton transfer in gas-phase ion/ion reactions of polyprotonated peptides. Journal of the American Chemical Society. 127: 12627-39. PMID 16144411 DOI: 10.1021/ja0526057  1
2004 Gunawardena HP, McLuckey SA. Synthesis of multi-unit protein hetero-complexes in the gas phase via ion-ion chemistry. Journal of Mass Spectrometry : Jms. 39: 630-8. PMID 15236301 DOI: 10.1002/jms.629  1
2004 Pan P, Gunawardena HP, Xia Y, McLuckey SA. Nanoelectrospray ionization of protein mixtures: solution pH and protein pI. Analytical Chemistry. 76: 1165-74. PMID 14961751 DOI: 10.1021/ac035209k  1
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