Year |
Citation |
Score |
2015 |
Smola MJ, Rice GM, Busan S, Siegfried NA, Weeks KM. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis. Nature Protocols. 10: 1643-69. PMID 26426499 DOI: 10.1038/Nprot.2015.103 |
0.469 |
|
2014 |
Siegfried NA, Busan S, Rice GM, Nelson JA, Weeks KM. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nature Methods. 11: 959-65. PMID 25028896 DOI: 10.1038/Nmeth.3029 |
0.532 |
|
2013 |
Mauger DM, Siegfried NA, Weeks KM. The genetic code as expressed through relationships between mRNA structure and protein function. Febs Letters. 587: 1180-8. PMID 23499436 DOI: 10.1016/J.Febslet.2013.03.002 |
0.503 |
|
2012 |
Chadalavada DM, Cerrone-Szakal AL, Wilcox JL, Siegfried NA, Bevilacqua PC. Mechanistic analysis of the hepatitis delta virus (HDV) ribozyme: methods for RNA preparation, structure mapping, solvent isotope effects, and co-transcriptional cleavage. Methods in Molecular Biology (Clifton, N.J.). 848: 21-40. PMID 22315061 DOI: 10.1007/978-1-61779-545-9_3 |
0.6 |
|
2011 |
Steen KA, Siegfried NA, Weeks KM. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA. Nature Protocols. 6: 1683-94. PMID 21979276 DOI: 10.1038/Nprot.2011.373 |
0.545 |
|
2010 |
Siegfried NA, Kierzek R, Bevilacqua PC. Role of unsatisfied hydrogen bond acceptors in RNA energetics and specificity. Journal of the American Chemical Society. 132: 5342-4. PMID 20345162 DOI: 10.1021/Ja9107726 |
0.577 |
|
2010 |
Siegfried NA, O'Hare B, Bevilacqua PC. Driving forces for nucleic acid pK(a) shifting in an A(+).C wobble: effects of helix position, temperature, and ionic strength. Biochemistry. 49: 3225-36. PMID 20337429 DOI: 10.1021/Bi901920G |
0.544 |
|
2009 |
Siegfried NA, Bevilacqua PC. Thinking inside the box: designing, implementing, and interpreting thermodynamic cycles to dissect cooperativity in RNA and DNA folding. Methods in Enzymology. 455: 365-93. PMID 19289213 DOI: 10.1016/S0076-6879(08)04213-4 |
0.6 |
|
2008 |
Cerrone-Szakal AL, Siegfried NA, Bevilacqua PC. Mechanistic characterization of the HDV genomic ribozyme: solvent isotope effects and proton inventories in the absence of divalent metal ions support C75 as the general acid. Journal of the American Chemical Society. 130: 14504-20. PMID 18842044 DOI: 10.1021/Ja801816K |
0.497 |
|
2007 |
Bevilacqua PC, Cerrone-Szakal AL, Siegfried NA. Insight into the functional versatility of RNA through model-making with applications to data fitting. Quarterly Reviews of Biophysics. 40: 55-85. PMID 17391549 DOI: 10.1017/S0033583507004593 |
0.61 |
|
2007 |
Siegfried NA, Metzger SL, Bevilacqua PC. Folding cooperativity in RNA and DNA is dependent on position in the helix. Biochemistry. 46: 172-81. PMID 17198387 DOI: 10.1021/Bi061375L |
0.638 |
|
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