Raziya Shaik, Ph.D. - Related publications

2013 Chemistry The University of Toledo 
Biological Chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhou M, Wang DO, Li W, Zheng J. RNA adduction derived from electrophilic species in vitro and in vivo. Chemico-Biological Interactions. 351: 109748. PMID 34801539 DOI: 10.1016/j.cbi.2021.109748   
2021 Park HJ, Jung C, Yoo TH. Development of one-step isothermal methods to detect RNAs using hairpin-loop signal converters and proximity proteolysis reaction. Biosensors & Bioelectronics. 197: 113769. PMID 34773751 DOI: 10.1016/j.bios.2021.113769   
2021 Park S, Sohn J, Kwon S, Kim EJE, Jung Y, Park HH, Kim SS, Lee SV. Age-dependent upregulation of Y RNAs in . Micropublication Biology. 2021. PMID 34604714 DOI: 10.17912/micropub.biology.000452   
2021 Roy S, Sengupta S. Evolution towards increasing complexity through functional diversification in a protocell model of the RNA world. Proceedings. Biological Sciences. 288: 20212098. PMID 34784760 DOI: 10.1098/rspb.2021.2098   
2021 Shi L, Zhang L, Wang L, Liu X, Gao H, Hou X, Zhao F, Yan H, Cai W, Wang L. Identifying long non-coding RNAs and characterizing their functional roles in swine mammary gland from colostrogenesis to lactogenesis. Animal Bioscience. PMID 34727649 DOI: 10.5713/ab.21.0308   
2021 Janissen R, Woodman A, Shengjuler D, Vallet T, Lee KM, Kuijpers L, Moustafa IM, Fitzgerald F, Huang PN, Perkins AL, Harki DA, Arnold JJ, Solano B, Shih SR, Vignuzzi M, et al. Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses. Molecular Cell. PMID 34687604 DOI: 10.1016/j.molcel.2021.10.003   
2021 Ingram ZM, Schneider DA, Lucius AL. Transient-state kinetic analysis of multi-nucleotide addition catalyzed by RNA polymerase I. Biophysical Journal. 120: 4378-4390. PMID 34509510 DOI: 10.1016/j.bpj.2021.09.008   
2021 Mu X, Hur S. Immunogenicity of -Transcribed RNA. Accounts of Chemical Research. 54: 4012-4023. PMID 34677064 DOI: 10.1021/acs.accounts.1c00521   
2021 Ageely EA, Chilamkurthy R, Jana S, Abdullahu L, O'Reilly D, Jensik PJ, Damha MJ, Gagnon KT. Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles. Nature Communications. 12: 6591. PMID 34782635 DOI: 10.1038/s41467-021-26989-z   
2021 Hohmann KF, Blümler A, Heckel A, Fürtig B. The RNA chaperone StpA enables fast RNA refolding by destabilization of mutually exclusive base pairs within competing secondary structure elements. Nucleic Acids Research. PMID 34614185 DOI: 10.1093/nar/gkab876   
2021 Pan HY, Yu Y, Cao T, Liu Y, Zhou YL, Zhang XX. Systematic Profiling of Exosomal Small RNA Epigenetic Modifications by High-Performance Liquid Chromatography-Mass Spectrometry. Analytical Chemistry. PMID 34735132 DOI: 10.1021/acs.analchem.1c03869   
2021 Liu M, Li H, Luo X, Cai J, Chen T, Xie Y, Ren J, Zuo Z. RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. Nucleic Acids Research. PMID 34718734 DOI: 10.1093/nar/gkab986   
2021 Wu C, Qavi AJ, Moyle AB, Wagner ND, Hachim A, Kavian N, Cole AR, Sweeney-Gibbons J, Rohrs HW, Peiris JSM, Basler CF, Gross ML, Valkenburg SA, Farnsworth CW, Amarasinghe GK, et al. Domain-specific biochemical and serological characterization of SARS-CoV-2 nucleocapsid protein. Star Protocols. 100906. PMID 34642671 DOI: 10.1016/j.xpro.2021.100906   
2021 Endo M, Kim JI, Shioi NA, Iwai S, Kuraoka I. endonuclease V is a ribonuclease specific for inosine-containing single-stranded RNA. Open Biology. 11: 210148. PMID 34665969 DOI: 10.1098/rsob.210148   
2021 Zheng D, Huang X, Peng J, Zhuang Y, Li Y, Qu J, Zhang S, Huang F. CircMYOF triggers progression and facilitates glycolysis via the VEGFA/PI3K/AKT axis by absorbing miR-4739 in pancreatic ductal adenocarcinoma. Cell Death Discovery. 7: 362. PMID 34811346 DOI: 10.1038/s41420-021-00759-8   
2021 Conine CC, Rando OJ. Soma-to-germline RNA communication. Nature Reviews. Genetics. PMID 34545247 DOI: 10.1038/s41576-021-00412-1   
2021 Liu C, Cao J, Zhang H, Yin J. The RNA modification in Echinococcus granulosus cysts revealed by mass spectrometry. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105124. PMID 34710588 DOI: 10.1016/j.meegid.2021.105124   
2021 Tsao N, Brickner JR, Rodell R, Ganguly A, Wood M, Oyeniran C, Ahmad T, Sun H, Bacolla A, Zhang L, Lukinović V, Soll JM, Townley BA, Casanova AG, Tainer JA, et al. Aberrant RNA methylation triggers recruitment of an alkylation repair complex. Molecular Cell. 81: 4228-4242.e8. PMID 34686315 DOI: 10.1016/j.molcel.2021.09.024   
2021 Song Y, Hanner RH, Meng B. Genome-wide screening of novel RT-qPCR reference genes for study of GLRaV-3 infection in wine grapes and refinement of an RNA isolation protocol for grape berries. Plant Methods. 17: 110. PMID 34711253 DOI: 10.1186/s13007-021-00808-4   
2021 Ojha N, Diaz Quiroz JF, Rosenthal JJC. In vitro and in cellula site-directed RNA editing using the λNDD-BoxB system. Methods in Enzymology. 658: 335-358. PMID 34517953 DOI: 10.1016/bs.mie.2021.06.009   
2021 Biswal JK, Ranjan R, Dahiya SS, Mallick S, Mohapatra JK. Regenerated silica-based RNA purification columns to address the short supply of RNA purification kits for COVID-19 diagnosis. Molecular Biology Reports. 48: 6871-6877. PMID 34510319 DOI: 10.1007/s11033-021-06688-0   
2021 Luige O, Bose PP, Stulz R, Steunenberg P, Brun O, Andersson S, Murtola M, Strömberg R. Zn-Dependent peptide nucleic acid-based artificial ribonucleases with unprecedented efficiency and specificity. Chemical Communications (Cambridge, England). PMID 34590632 DOI: 10.1039/d1cc04383h   
2021 Fields AT, Lee MC, Mayer F, Santos YA, Bainton CMV, Matthay ZA, Callcut RA, Mayer N, Cuschieri J, Kober KM, Bainton RJ, Kornblith LZ. A New Trauma Frontier: Exploratory Pilot Study of Platelet Transcriptomics in Trauma Patients. The Journal of Trauma and Acute Care Surgery. PMID 34738997 DOI: 10.1097/TA.0000000000003450   
2021 Fields AT, Lee MC, Mayer F, Santos YA, Bainton CMV, Matthay ZA, Callcut RA, Mayer N, Cuschieri J, Kober KM, Bainton RJ, Kornblith LZ. A New Trauma Frontier: Exploratory Pilot Study of Platelet Transcriptomics in Trauma Patients. The Journal of Trauma and Acute Care Surgery. PMID 34738997 DOI: 10.1097/TA.0000000000003450   
2021 Lalaouna D, Prévost K, Park S, Chénard T, Bouchard MP, Caron MP, Vanderpool CK, Fei J, Massé E. Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in . Non-Coding Rna. 7. PMID 34698252 DOI: 10.3390/ncrna7040064   
2021 Chai D, Jia C, Zheng J, Zou Q, Li F. Staem5: A novel computational approachfor accurate prediction of m5C site. Molecular Therapy. Nucleic Acids. 26: 1027-1034. PMID 34786208 DOI: 10.1016/j.omtn.2021.10.012   
2021 Sun YH, Lee B, Li XZ. The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34724117 DOI: 10.1007/s00335-021-09927-8   
2021 Goyon A, Scott B, Kurita K, Crittenden CM, Shaw D, Lin A, Yehl P, Zhang K. Full Sequencing of CRISPR/Cas9 Single Guide RNA (sgRNA) via Parallel Ribonuclease Digestions and Hydrophilic Interaction Liquid Chromatography-High-Resolution Mass Spectrometry Analysis. Analytical Chemistry. PMID 34699173 DOI: 10.1021/acs.analchem.1c03533   
2021 Ge Y, Liu T, Wang C, Zhang Y, Xu S, Ren Y, Feng Y, Yin L, Pu Y, Liang G. N6-methyladenosine RNA modification and its interaction with regulatory non-coding RNAs in colorectal cancer. Rna Biology. 1-11. PMID 34674600 DOI: 10.1080/15476286.2021.1974749   
2021 Piffoux M, Volatron J, Silva AKA, Gazeau F. Thinking Quantitatively of RNA-Based Information Transfer via Extracellular Vesicles: Lessons to Learn for the Design of RNA-Loaded EVs. Pharmaceutics. 13. PMID 34834346 DOI: 10.3390/pharmaceutics13111931   
2021 Yap K, Chung TH, Makeyev EV. Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments. Molecular Cell. PMID 34741808 DOI: 10.1016/j.molcel.2021.10.009   
2021 Feng X, Yang S, Zhang Y, Zhiyuan C, Tang K, Li G, Yu H, Leng J, Wang Q. , Encoding a Pentatricopeptide Repeat Protein, Is Essential for Chloroplast RNA Editing and Biogenesis in Soybean. Frontiers in Plant Science. 12: 690973. PMID 34567023 DOI: 10.3389/fpls.2021.690973   
2021 Han Z, Li K, Wu J, Wang K, Qiu C, Ye H, Cui C, Song C, Wang K, Shi J, Wang P, Zhang J. Diagnostic value of RNA for hepatocellular carcinoma: a network meta-analysis. Biomarkers in Medicine. PMID 34783583 DOI: 10.2217/bmm-2021-0327   
2021 Pérez-Cañamás M, Hevia E, Katsarou K, Hernández C. Genetic evidence for the involvement of Dicer-like 2 and 4 as well as Argonaute 2 in the response against . The Journal of General Virology. 102. PMID 34623234 DOI: 10.1099/jgv.0.001656   
2021 Chen X, Deng Z, Yu D, Zhang X, An Z, Wu W, Liang Q, Huang X, Huang H, Cheng H. Genome-Wide Identification and Analysis of Small Nucleolar RNAs and Their Roles in Regulating Latex Regeneration in the Rubber Tree (). Frontiers in Plant Science. 12: 731484. PMID 34764965 DOI: 10.3389/fpls.2021.731484   
2021 Wen C, Wan X, Zhang Y, Du H, Wei C, Zhong R, Zhang H, Shi Y, Xie J, Fu Y, Zhao Y. Molecular Characterization of the First Alternavirus Identified in . Viruses. 13. PMID 34696456 DOI: 10.3390/v13102026   
2021 Tang YP, Zhang QB, Dai F, Liao X, Dong ZR, Yi T, Qing YF. Circular RNAs in peripheral blood mononuclear cells from ankylosing spondylitis. Chinese Medical Journal. PMID 34670246 DOI: 10.1097/CM9.0000000000001815   
2021 Gong P. Structural basis of viral RNA-dependent RNA polymerase nucleotide addition cycle in picornaviruses. The Enzymes. 49: 215-233. PMID 34696833 DOI: 10.1016/bs.enz.2021.06.002   
2021 Lal A, Pike JFW, Polley EL, Huang S, Sanni M, Hailat T, Zimmerman S, Clay-Gilmour A, Bruce TF, Marcus KR, Roudebush WE, Chosed RJ. Comparison of RNA content from hydrophobic interaction chromatography-isolated seminal plasma exosomes from intrauterine insemination (IUI) pregnancies. Andrologia. e14325. PMID 34837240 DOI: 10.1111/and.14325   
2021 Li S, Wang X, Wang T, Zhang H, Lu X, Liu L, Li L, Bo C, Kong X, Xu S, Ning S, Wang J, Wang L. Identification of the regulatory role of lncRNA HCG18 in myasthenia gravis by integrated bioinformatics and experimental analyses. Journal of Translational Medicine. 19: 468. PMID 34794447 DOI: 10.1186/s12967-021-03138-0   
2021 Benoni R, Krafcikova P, Baranowski MR, Kowalska J, Boura E, Cahová H. Substrate Specificity of SARS-CoV-2 Nsp10-Nsp16 Methyltransferase. Viruses. 13. PMID 34578302 DOI: 10.3390/v13091722   
2021 Si J, Tang X, Xu L, Fu H, Li H, He Y, Bao J, Tang J, Li A, Lu N, Yang C. High throughput sequencing of whole transcriptome and construct of ceRNA regulatory network in RD cells infected with enterovirus D68. Virology Journal. 18: 216. PMID 34743709 DOI: 10.1186/s12985-021-01686-x   
2021 Drews F, Karunanithi S, Götz U, Marker S, deWijn R, Pirritano M, Rodrigues-Viana AM, Jung M, Gasparoni G, Schulz MH, Simon M. Two Piwis with Ago-like functions silence somatic genes at the chromatin level. Rna Biology. 1-13. PMID 34663180 DOI: 10.1080/15476286.2021.1991114   
2021 Chatterjee B, Shen CJ, Majumder P. RNA Modifications and RNA Metabolism in Neurological Disease Pathogenesis. International Journal of Molecular Sciences. 22. PMID 34769301 DOI: 10.3390/ijms222111870   
2021 Costanzi E, Simioni C, Varano G, Brenna C, Conti I, Neri LM. The Role of Extracellular Vesicles as Shuttles of RNA and Their Clinical Significance as Biomarkers in Hepatocellular Carcinoma. Genes. 12. PMID 34207985 DOI: 10.3390/genes12060902   
2021 Ishiguro A, Lu J, Ozawa D, Nagai Y, Ishihama A. ALS-Linked FUS mutations dysregulate G-quadruplex-dependent liquid-liquid phase separation and liquid-to-solid transition. The Journal of Biological Chemistry. 101284. PMID 34624313 DOI: 10.1016/j.jbc.2021.101284   
2021 Mu H, Zhang T, Yang Y, Zhang D, Gao J, Li J, Yue L, Gao D, Shi B, Han Y, Zhong L, Chen X, Wang ZB, Lin Z, Tong MH, et al. METTL3-mediated mRNA N-methyladenosine is required for oocyte and follicle development in mice. Cell Death & Disease. 12: 989. PMID 34689175 DOI: 10.1038/s41419-021-04272-9   
2021 Zhang Z, Wei W, Wang H, Dong J. N6-Methyladenosine-Sculpted Regulatory Landscape of Noncoding RNA. Frontiers in Oncology. 11: 743990. PMID 34722298 DOI: 10.3389/fonc.2021.743990   
2021 Huang Y, Ge W, Ding Y, Zhang L, Zhou J, Kong Y, Cui B, Gao B, Qian X, Wang W. The circular RNA circSLC7A11 functions as a mir-330-3p sponge to accelerate hepatocellular carcinoma progression by regulating cyclin-dependent kinase 1 expression. Cancer Cell International. 21: 636. PMID 34844614 DOI: 10.1186/s12935-021-02351-7   
2021 Zerio CJ, Cunningham TA, Tulino AS, Alimusa EA, Buckley TM, Moore KT, Dodson M, Wilson NC, Ambrose AJ, Shi T, Sivinski J, Essegian DJ, Zhang DD, Schürer SC, Schatz JH, et al. Discovery of an eIF4A Inhibitor with a Novel Mechanism of Action. Journal of Medicinal Chemistry. 64: 15727-15746. PMID 34676755 DOI: 10.1021/acs.jmedchem.1c01014