Daniel A. KIRSCHNER - Related publications

Boston College, Newton, MA, United States 
membrane structure; x-ray diffraction; neutron diffraction; myelin; amyloid
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kumar A, Kumar P, Saumya KU, Giri R. Investigating the conformational dynamics of SARS-CoV-2 NSP6 protein with emphasis on non-transmembrane 91-112 & 231-290 regions. Microbial Pathogenesis. 161: 105236. PMID 34648928 DOI: 10.1016/j.micpath.2021.105236   
2021 Dawson WM, Martin FJO, Rhys GG, Shelley KL, Brady RL, Woolfson DN. Coiled coils 9-to-5: rational design of α-helical barrels with tunable oligomeric states. Chemical Science. 12: 6923-6928. PMID 34745518 DOI: 10.1039/d1sc00460c   
2021 Shiratori T, Goto S, Sakaguchi T, Kasai T, Otsuka Y, Higashi K, Makino K, Takahashi H, Komatsu K. Singular value decomposition analysis of the secondary structure features contributing to the circular dichroism spectra of model proteins. Biochemistry and Biophysics Reports. 28: 101153. PMID 34712848 DOI: 10.1016/j.bbrep.2021.101153   
2021 Liu Y, Zhang Y, Sun Y, Ding F. A buried glutamate in the cross-β core renders β-endorphin fibrils reversible. Nanoscale. PMID 34812835 DOI: 10.1039/d1nr05679d   
2021 Catalano C, Al Mughram MH, Guo Y, Kellogg GE. 3D interaction homology: Hydropathic interaction environments of serine and cysteine are strikingly different and their roles adapt in membrane proteins. Current Research in Structural Biology. 3: 239-256. PMID 34693344 DOI: 10.1016/j.crstbi.2021.09.002   
2021 Kar M, Posey AE, Dar F, Hyman AA, Pappu RV. Glycine-Rich Peptides from FUS Have an Intrinsic Ability to Self-Assemble into Fibers and Networked Fibrils. Biochemistry. PMID 34648275 DOI: 10.1021/acs.biochem.1c00501   
2021 Arakawa T, Tokunaga M, Kita Y, Niikura T, Baker RW, Reimer JM, Leschziner AE. Structure Analysis of Proteins and Peptides by Difference Circular Dichroism Spectroscopy. The Protein Journal. PMID 34709521 DOI: 10.1007/s10930-021-10024-7   
2021 Dennison SR, Reddy SM, Morton LHG, Harris F, Badiani K, Phoenix DA. PEGylation enhances the antibacterial and therapeutic potential of amphibian host defence peptides. Biochimica Et Biophysica Acta. Biomembranes. 1864: 183806. PMID 34656552 DOI: 10.1016/j.bbamem.2021.183806   
2021 Bulyáki É, Kun J, Molnár T, Papp A, Micsonai A, Vadászi H, Márialigeti B, Kovács AI, Gellén G, Yamaguchi K, Lin Y, So M, Józsi M, Schlosser G, Lee YH, et al. Pathogenic D76N Variant of β-Microglobulin: Synergy of Diverse Effects in Both the Native and Amyloid States. Biology. 10. PMID 34827190 DOI: 10.3390/biology10111197   
2021 Basha SJ, Rao KY, Monika K, Gajula NN, Dubey S, Reddy ABM, Subramanyam R, Damu AG. Deciphering the AChE-binding mechanism with multifunctional tricyclic coumarin anti-Alzheimer's agents using biophysical and bioinformatics approaches and evaluation of their modulating effect on Amyloidogenic peptide assembly. International Journal of Biological Macromolecules. PMID 34740688 DOI: 10.1016/j.ijbiomac.2021.10.204   
2021 Lei J, Cai M, Shen Y, Lin D, Deng X. Molecular dynamics study on the inhibition mechanisms of ReACp53 peptide for p53-R175H mutant aggregation. Physical Chemistry Chemical Physics : Pccp. PMID 34612239 DOI: 10.1039/d1cp03094a   
2021 Parker JB, Tenorio CA, Blaber M. The ubiquitous buried water in the beta-trefoil architecture contributes to the folding nucleus and ~20% of the folding enthalpy. Protein Science : a Publication of the Protein Society. PMID 34562298 DOI: 10.1002/pro.4192   
2021 Lü Y, Bai J, Tan D, Chen T, Shan A. [The effects of hinge structure on the biological activity of antimicrobial peptides and its application in molecular design: a review]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 3142-3150. PMID 34622623 DOI: 10.13345/j.cjb.200728   
2021 Morand J, Nunes A, Faísca PFN. The folding space of protein2-microglobulin is modulated by a single disulfide bridge. Physical Biology. 18. PMID 34098544 DOI: 10.1088/1478-3975/ac08ec   
2021 Sang J, Li L, Wen J, Gu Q, Wu J, Yu Y, Xu Y, Fu M, Lin X. Evaluation of the Structural, Physicochemical and Functional Properties of Dietary Fiber Extracted from Newhall Navel Orange By-Products. Foods (Basel, Switzerland). 10. PMID 34829055 DOI: 10.3390/foods10112772   
2021 Pal S, Banerjee S, Prabhakaran EN. α-Helices Propagating from Stable Nucleators Exhibit Unconventional Thermal Folding. Febs Letters. PMID 34716991 DOI: 10.1002/1873-3468.14216   
2021 Tang R, Song Y, Shi M, Jiang Z, Zhang L, Xiao Y, Tian Y, Zhou S. Rational Design of a Dual-Targeting Natural Toxin-Like Bicyclic Peptide for Selective Bioenergetic Blockage in Cancer Cells. Bioconjugate Chemistry. PMID 34606715 DOI: 10.1021/acs.bioconjchem.1c00366   
2021 Yang W, Kim BS, Muniyappan S, Lee YH, Kim JH, Yu W. Aggregation-Prone Structural Ensembles of Transthyretin Collected With Regression Analysis for NMR Chemical Shift. Frontiers in Molecular Biosciences. 8: 766830. PMID 34746240 DOI: 10.3389/fmolb.2021.766830   
2021 Golysheva EA, Boyle AL, Biondi B, Ruzza P, Kros A, Raap J, Toniolo C, Formaggio F, Dzuba SA. Probing the E/K Peptide Coiled-Coil Assembly by Double Electron-Electron Resonance and Circular Dichroism. Biochemistry. 60: 19-30. PMID 33320519 DOI: 10.1021/acs.biochem.0c00773   
2021 Zhang W, Liu M, Dupont RL, Huang K, Yu L, Liu S, Wang X, Wang C. Conservation and Identity Selection of Cationic Residues Flanking the Hydrophobic Regions in Intermediate Filament Superfamily. Frontiers in Chemistry. 9: 752630. PMID 34540811 DOI: 10.3389/fchem.2021.752630   
2021 Juanes-Gusano D, Santos M, Reboto V, Alonso M, Rodríguez-Cabello JC. Self-assembling systems comprising intrinsically disordered protein polymers like elastin-like recombinamers. Journal of Peptide Science : An Official Publication of the European Peptide Society. e3362. PMID 34545666 DOI: 10.1002/psc.3362   
2021 Meng D, Zhang L, Wang Q, Zhang Y, Sun Y, Zhang H, Wang Z, Zhou Z, Yang R. Self-Assembly of Phycoerythrin with Oligochitosan by Electrostatic Interaction for Stabilization of Phycoerythrin. Journal of Agricultural and Food Chemistry. PMID 34669400 DOI: 10.1021/acs.jafc.1c05205   
2021 Li MC, Liu YJ, Hsu KC, Lin TH, Lin CW, Horng JC, Wang SK. Design and synthesis of fluorinated peptides for analysis of fluorous effects on the interconversion of polyproline helices. Bioorganic Chemistry. 105491. PMID 34838334 DOI: 10.1016/j.bioorg.2021.105491   
2021 Yu X, Mullen TM, Abrishami V, Huiskonen JT, Nemerow GR, Reddy VS. Structure of a cell entry defective human adenovirus provides insights into precursor proteins and capsid maturation. Journal of Molecular Biology. 167350. PMID 34774568 DOI: 10.1016/j.jmb.2021.167350   
2021 Mikkelsen MD, Cao HTT, Roret T, Rhein-Knudsen N, Holck J, Tran VTT, Nguyen TT, Tran VHN, Lezyk MJ, Muschiol J, Pham TD, Czjzek M, Meyer AS. A novel thermostable prokaryotic fucoidan active sulfatase PsFucS1 with an unusual quaternary hexameric structure. Scientific Reports. 11: 19523. PMID 34593864 DOI: 10.1038/s41598-021-98588-3   
2021 Nakatsuji M, Sugiura K, Suda K, Sakurai M, Ubatani M, Muroya H, Okubo R, Noguchi R, Kamata Y, Fukutomi Y, Ishibashi O, Nishimura S, Inui T. Structure-based prediction of the IgE epitopes of the major dog allergen Can f 1. The Febs Journal. PMID 34699686 DOI: 10.1111/febs.16252   
2021 Brito A, Dave D, Lampel A, Castro VIB, Kroiss D, Reis RL, Tuttle T, Ulijn RV, Pires RA, Pashkuleva I. Expanding the Conformational Landscape of Minimalistic Tripeptides by Their -Glycosylation. Journal of the American Chemical Society. PMID 34797059 DOI: 10.1021/jacs.1c07592   
2021 Jia Z, Liu C, Chen Y, Jiang H, Wang Z, Yao J, Yang J, Zhu J, Zhang B, Yuchi Z. Crystal structures of the SARS-CoV-2 nucleocapsid protein C-terminal domain and development of nucleocapsid-targeting nanobodies. The Febs Journal. PMID 34665939 DOI: 10.1111/febs.16239   
2021 Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, et al. Structure, function and pharmacology of human itch receptor complexes. Nature. PMID 34789875 DOI: 10.1038/s41586-021-04077-y   
2021 Morgan BR, Massi F. The Role of Substrate Mediated Allostery in the Catalytic Competency of the Bacterial Oligosaccharyltransferase PglB. Frontiers in Molecular Biosciences. 8: 740904. PMID 34604309 DOI: 10.3389/fmolb.2021.740904   
2021 Grahame DAS, Dupuis JH, Bryksa BC, Tanaka T, Yada RY. Improving the alkaline stability of pepsin through rational protein design using renin, an alkaline-stable aspartic protease, as a structural and functional reference. Enzyme and Microbial Technology. 150: 109871. PMID 34489030 DOI: 10.1016/j.enzmictec.2021.109871   
2021 Hallinan JP, Doyle LA, Shen BW, Gewe MM, Takushi B, Kennedy MA, Friend D, Roberts JM, Bradley P, Stoddard BL. Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces. Communications Biology. 4: 1240. PMID 34716407 DOI: 10.1038/s42003-021-02766-y   
2021 Jang H, Lee C, Hwang Y, Lee SJ. Concanavalin A: coordination diversity to xenobiotic metal ions and biological consequences. Dalton Transactions (Cambridge, England : 2003). PMID 34806716 DOI: 10.1039/d1dt03501k   
2021 Gu W, Luo Z, Vonrhein C, Jia X, Ve T, Nanson JD, Kobe B. Crystal structure determination of the armadillo repeat domain of Drosophila SARM1 using MIRAS phasing. Acta Crystallographica. Section F, Structural Biology Communications. 77: 364-373. PMID 34605441 DOI: 10.1107/S2053230X21006786   
2021 Cuy-Chaparro L, Bohórquez MD, Arévalo-Pinzón G, Castañeda-Ramírez JJ, Suárez CF, Pabón L, Ordóñez D, Gallego-López GM, Suárez CE, Moreno-Pérez DA, Patarroyo MA. Ligand-Receptor Interaction: AMA-1 Contains Small Regions Governing Bovine Erythrocyte Binding. International Journal of Molecular Sciences. 22. PMID 33450807 DOI: 10.3390/ijms22020714   
2021 Baucom DR, Furr M, Kumar VG, Okoto P, Losey JL, Henry RL, Moradi M, Suresh Kumar TK, Heyes CD. Transient Local Secondary Structure in the Intrinsically Disordered C-Term of the Albino3 Insertase. Biophysical Journal. PMID 34662559 DOI: 10.1016/j.bpj.2021.10.013   
2021 Lu R, Zhang X, Cheng X, Zan X, Geng W. Secondary Structure-Dominated Layer-by-Layer Growth Mode of Protein Coatings. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34723563 DOI: 10.1021/acs.langmuir.1c02062   
2021 Efaz FM, Islam S, Talukder SA, Akter S, Tashrif MZ, Ali MA, Sufian MA, Parves MR, Islam MJ, Halim MA. Repurposing fusion inhibitor peptide against SARS-CoV-2. Journal of Computational Chemistry. PMID 34591335 DOI: 10.1002/jcc.26758   
2021 Ghosh G, Barman R, Mukherjee A, Ghosh U, Ghosh S, Fernandez G. Control over multiple Nano- and Secondary Structures in Peptide Self-Assembly. Angewandte Chemie (International Ed. in English). PMID 34758508 DOI: 10.1002/anie.202113403   
2021 Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS. Non-conventional octameric structure of C-phycocyanin. Communications Biology. 4: 1238. PMID 34716405 DOI: 10.1038/s42003-021-02767-x   
2021 Zhao Q, Yuan JJ, Hu F, Qian C, Tian CF, Wang JT, Gao D, Yi W, Wang HB. Isolation, physicochemical, and structure-function relationship of the hydrophobic variant of Fc-fusion proteins that bind to TNF-α receptor, HS002 and HS002A. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1186: 123026. PMID 34781108 DOI: 10.1016/j.jchromb.2021.123026   
2021 Robertson AJ, Courtney JM, Shen Y, Ying J, Bax A. Concordance of X-ray and AlphaFold2 Models of SARS-CoV-2 Main Protease with Residual Dipolar Couplings Measured in Solution. Journal of the American Chemical Society. PMID 34757725 DOI: 10.1021/jacs.1c10588   
2021 P R, Ramireddy S, Chakraborty S, Mukherjee S, J S, C S. Structural localization of pathogenic mutations in the central nucleotide-binding domain (NBD) of nucleotide-binding oligomerization domain-2 (NOD2) protein and their inference in inflammatory disorders. Nucleosides, Nucleotides & Nucleic Acids. 1-22. PMID 34622739 DOI: 10.1080/15257770.2021.1986719   
2021 Hassankalhori M, Bolcato G, Bissaro M, Sturlese M, Moro S. Shedding Light on the Molecular Recognition of Sub-Kilodalton Macrocyclic Peptides on Thrombin by Supervised Molecular Dynamics. Frontiers in Molecular Biosciences. 8: 707661. PMID 34532343 DOI: 10.3389/fmolb.2021.707661   
2021 Kim DG, Baek I, Lee Y, Kim H, Kim JY, Bang G, Kim S, Yoon HJ, Han BW, Suh SW, Kim HS. Structural basis for SdgB- and SdgA-mediated glycosylation of staphylococcal adhesive proteins. Acta Crystallographica. Section D, Structural Biology. 77: 1460-1474. PMID 34726173 DOI: 10.1107/S2059798321010068   
2021 Keshtvarz M, Mahboobi M, Kieliszek M, Miecznikowski A, Sedighian H, Rezaei M, Haghighi MA, Zareh Z, Rezaei E. Engineering of Cytolethal Distending Toxin B by Its Reducing Immunogenicity and Maintaining Stability as a New Drug Candidate for Tumor Therapy; an In Silico Study. Toxins. 13. PMID 34822569 DOI: 10.3390/toxins13110785   
2021 Kurokawa N, Midorikawa R, Nakamura M, Noguchi K, Morishima K, Inoue R, Sugiyama M, Yohda M. Oligomeric Structural Transition of HspB1 from Chinese Hamster. International Journal of Molecular Sciences. 22. PMID 34639138 DOI: 10.3390/ijms221910797   
2021 Yan X, Weng P, Shi D, Jiang YB. Supramolecular helices from helical building blocks head-to-tail intermolecular interactions. Chemical Communications (Cambridge, England). 57: 12562-12574. PMID 34781336 DOI: 10.1039/d1cc04991g   
2021 Singh J, Maurya A, Singh PK, Viswanathan V, Ahmad MI, Sharma P, Sharma S, Singh TP. A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lactoferrin C-lobe at 2.28 Å Resolution. The Protein Journal. PMID 34734372 DOI: 10.1007/s10930-021-10028-3   
2021 Yang J, Zhang P, Cheng WX, Lu Y, Gang W, Ren G. Exposing structural variations in SARS-CoV-2 evolution. Scientific Reports. 11: 22042. PMID 34764391 DOI: 10.1038/s41598-021-01650-3