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Samuel H. Payne, Ph.D. - Publications

Affiliations: 
2008 Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
chemotactic motility in developed Dictyostelium
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68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH. Uncovering Hidden Members and Functions of the Soil Microbiome Using Metaproteomics. Journal of Proteome Research. PMID 35793793 DOI: 10.1021/acs.jproteome.2c00334  0.319
2022 Boekweg H, Van Der Watt D, Truong T, Johnston SM, Guise AJ, Plowey ED, Kelly RT, Payne SH. Features of Peptide Fragmentation Spectra in Single-Cell Proteomics. Journal of Proteome Research. 21: 182-188. PMID 34920664 DOI: 10.1021/acs.jproteome.1c00670  0.301
2020 Boekweg H, McCown MA, Payne SH. Simple and Efficient Data Analysis Dissemination for Individual Labs. Journal of Proteome Research. PMID 32790999 DOI: 10.1021/Acs.Jproteome.0C00454  0.326
2020 Yang M, Petralia F, Li Z, Li H, Ma W, Song X, Kim S, Lee H, Yu H, Lee B, Bae S, Heo E, Kaczmarczyk J, Stępniak P, Warchoł M, ... ... Payne SH, et al. Crowdsourced Assessment of the of Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics. Cell Systems. PMID 32710834 DOI: 10.1016/J.Cels.2020.06.013  0.408
2020 Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, ... ... Payne SH, et al. Proteogenomic Characterization of Endometrial Carcinoma. Cell. PMID 32059776 DOI: 10.1016/J.Cell.2020.01.026  0.338
2019 Liu W, Payne SH, Ma S, Fenyö D. Extracting Pathway-Level Signatures from Proteogenomic data in Breast Cancer Using Independent Component Analysis. Molecular & Cellular Proteomics : McP. PMID 31213479 DOI: 10.1074/Mcp.Tir119.001442  0.34
2019 Schaffer LV, Millikin RJ, Miller RM, Anderson LC, Fellers RT, Ge Y, Kelleher NL, LeDuc RD, Liu X, Payne SH, Sun L, Thomas PM, Tucholski T, Wang Z, Wu S, et al. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics. e1800361. PMID 31050378 DOI: 10.1002/Pmic.201800361  0.424
2019 Schaffer LV, Millikin RJ, Miller RM, Anderson LC, Fellers RT, Ge Y, Kelleher NL, LeDuc RD, Liu X, Payne SH, Sun L, Thomas PM, Tucholski T, Wang Z, Wu S, et al. Back Cover: Identification and Quantification of Proteoforms by Mass Spectrometry Proteomics. 19: 1970085. DOI: 10.1002/Pmic.201970085  0.348
2018 Gibbons BC, Fillmore TL, Gao Y, Liu T, Nakayasu ES, Moore RJ, Metz TO, Payne SH. Rapidly Assessing the Quality of Targeted Proteomics Experiments Through Monitoring Stable-isotope Labeled Standards. Journal of Proteome Research. PMID 30525668 DOI: 10.1021/Acs.Jproteome.8B00688  0.435
2018 Christensen DG, Meyer JG, Baumgartner JT, D'Souza AK, Nelson WC, Payne SH, Kuhn ML, Schilling B, Wolfe AJ. Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli. Mbio. 9. PMID 30352934 DOI: 10.1128/Mbio.01905-18  0.371
2018 Kushner IK, Clair G, Purvine SO, Lee JY, Adkins JN, Payne SH. Individual variability of protein expression in human tissues. Journal of Proteome Research. PMID 30300549 DOI: 10.1021/Acs.Jproteome.8B00580  0.352
2018 Jarman KH, Heller NC, Jenson SC, Hutchinson JR, Kaiser BLD, Payne SH, Wunschel DS, Merkley ED. Proteomics goes to court: A statistical foundation for forensic toxin/organism identification using bottom-up proteomics. Journal of Proteome Research. PMID 30109807 DOI: 10.1021/Acs.Jproteome.8B00212  0.425
2018 Sengupta S, Sun SQ, Huang KL, Oh C, Bailey MH, Varghese R, Wyczalkowski MA, Ning J, Tripathi P, McMichael JF, Johnson KJ, Kandoth C, Welch J, Ma C, Wendl MC, ... Payne SH, et al. Integrative omics analyses broaden treatment targets in human cancer. Genome Medicine. 10: 60. PMID 30053901 DOI: 10.1186/S13073-018-0564-Z  0.309
2018 Lee JY, Choi H, Colangelo CM, Davis D, Hoopmann MR, Käll L, Lam H, Payne SH, Perez-Riverol Y, The M, Wilson R, Weintraub ST, Palmblad M. ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data. Journal of Biomolecular Techniques : Jbt. PMID 29977167 DOI: 10.7171/Jbt.18-2902-003  0.397
2018 Lee JY, Fujimoto GM, Wilson R, Wiley HS, Payne SH. Blazing Signature Filter: a library for fast pairwise similarity comparisons. Bmc Bioinformatics. 19: 221. PMID 29890950 DOI: 10.1186/S12859-018-2210-6  0.31
2018 Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES. An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. International Journal of Mass Spectrometry. 427: 91-99. PMID 29706793 DOI: 10.1016/J.Ijms.2017.11.003  0.371
2018 The M, Edfors F, Perez-Riverol Y, Payne SH, Hoopmann MR, Palmblad M, Forsström B, Käll L. A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of Proteome Research. PMID 29631402 DOI: 10.1021/Acs.Jproteome.7B00899  0.436
2018 Bailey MH, Zhou DC, Wu Y, Wyczalkowski MA, Wang L, Rodrigues FM, Mills G, Payne S, Fenyo D, Ding L. Abstract 2706: Effects of germline and somatic mutations on protein expression in tumor and adjacent normal tissues in breast, ovarian, and colorectal tumors Cancer Research. 78: 2706-2706. DOI: 10.1158/1538-7445.Am2018-2706  0.325
2018 Callister SJ, Fillmore TL, Nicora CD, Shaw JB, Purvine SO, Orton DJ, White RA, Moore RJ, Burnet MC, Nakayasu ES, Payne SH, Jansson JK, Paša-Tolić L. Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography Soil Biology and Biochemistry. 125: 290-299. DOI: 10.1016/J.Soilbio.2018.07.018  0.313
2017 Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical Science. 8: 7724-7736. PMID 29568436 DOI: 10.1039/C7Sc03464D  0.306
2017 Nakayasu ES, Burnet MC, Walukiewicz HE, Wilkins CS, Shukla AK, Brooks S, Plutz MJ, Lee BD, Schilling B, Wolfe AJ, Müller S, Kirby JR, Rao CV, Cort JR, Payne SH. Ancient Regulatory Role of Lysine Acetylation in Central Metabolism. Mbio. 8. PMID 29184018 DOI: 10.1128/Mbio.01894-17  0.341
2017 Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, ... ... Payne SH, et al. Informed-Proteomics: open-source software package for top-down proteomics. Nature Methods. PMID 28783154 DOI: 10.1038/Nmeth.4388  0.423
2017 Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data. Nature Methods. PMID 28783153 DOI: 10.1038/Nmeth.4390  0.458
2017 Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. PIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association. Bioinformatics (Oxford, England). PMID 28505286 DOI: 10.1093/Bioinformatics/Btx305  0.304
2017 Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR. Methods, tools and current perspectives in proteogenomics. Molecular & Cellular Proteomics : McP. PMID 28456751 DOI: 10.1074/Mcp.Mr117.000024  0.436
2017 Kyle JE, Crowell KL, Casey CP, Fujimoto GM, Kim S, Dautel SE, Smith RD, Payne SH, Metz TO. LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data. Bioinformatics (Oxford, England). PMID 28158427 DOI: 10.1093/Bioinformatics/Btx046  0.349
2017 McDermott JE, Liu T, Payne S, Petyuk V, Zhang H, Zhang Z, Chan D, Smith R, Rodland K. Abstract 208: Proteomic measurements of protein abundance and phosphorylation identify novel kinase-substrate relationships in ovarian cancer Cancer Research. 77: 208-208. DOI: 10.1158/1538-7445.Am2017-208  0.33
2016 Na S, Payne SH, Bandeira N. Multi-species identification of polymorphic peptide variants via propagation in spectral networks. Molecular & Cellular Proteomics : McP. PMID 27609420 DOI: 10.1074/Mcp.O116.060913  0.449
2016 Degan MG, Ryadinskiy L, Fujimoto GM, Wilkins CS, Lichti CF, Payne SH. A Skyline Plugin for Pathway-Centric Data Browsing. Journal of the American Society For Mass Spectrometry. PMID 27530777 DOI: 10.1007/S13361-016-1448-3  0.411
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/J.Cell.2016.05.069  0.596
2016 McDermott JE, Payne S, Ray D, Petyuk V, Moore R, Gritsenko M, Smith R, Rodland K. Abstract 774: Proteogenomic characterization of high-grade serous ovarian cancer Cancer Research. 76: 774-774. DOI: 10.1158/1538-7445.Am2016-774  0.396
2015 Tabb DL, Wang X, Carr SA, Clauser KR, Mertins P, Chambers MC, Holman JD, Wang J, Zhang B, Zimmerman LJ, Chen X, Gunawardena HP, Davies SR, Ellis MJ, Li S, ... ... Payne SH, et al. Reproducibility of differential proteomic technologies in CPTAC fractionated xenografts. Journal of Proteome Research. PMID 26653538 DOI: 10.1021/Acs.Jproteome.5B00859  0.423
2015 Ruggles KV, Tang Z, Wang X, Grover H, Askenazi M, Teubl J, Cao S, McLellan MD, Clauser KR, Tabb DL, Mertins P, Slebos R, Erdmann-Gilmore P, Li S, Gunawardena HP, ... ... Payne S, et al. An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer. Molecular & Cellular Proteomics : McP. PMID 26631509 DOI: 10.1074/Mcp.M115.056226  0.466
2015 Tripp HJ, Sutton G, White O, Wortman J, Pati A, Mikhailova N, Ovchinnikova G, Payne SH, Kyrpides NC, Ivanova N. Toward a standard in structural genome annotation for prokaryotes. Standards in Genomic Sciences. 10: 45. PMID 26380633 DOI: 10.1186/S40793-015-0034-9  0.43
2015 Payne SH, Monroe ME, Overall CC, Kiebel GR, Degan M, Gibbons BC, Fujimoto GM, Purvine SO, Adkins JN, Lipton MS, Smith RD. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity. Scientific Data. 2: 150041. PMID 26306205 DOI: 10.1038/Sdata.2015.41  0.41
2015 Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold RH, Smith RD, Noble WS, MacCoss MJ. Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data. Molecular & Cellular Proteomics : McP. PMID 26217018 DOI: 10.1074/Mcp.O114.047035  0.466
2015 Wu C, Monroe ME, Xu Z, Slysz GW, Payne SH, Rodland KD, Liu T, Smith RD. An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics. Journal of the American Society For Mass Spectrometry. PMID 26015166 DOI: 10.1007/S13361-015-1169-Z  0.412
2015 Payne SH. The utility of protein and mRNA correlation. Trends in Biochemical Sciences. 40: 1-3. PMID 25467744 DOI: 10.1016/J.Tibs.2014.10.010  0.327
2015 Xu Z, Wu C, Xie F, Slysz GW, Tolic N, Monroe ME, Petyuk VA, Payne SH, Fujimoto GM, Moore RJ, Fillmore TL, Schepmoes AA, Levine DA, Townsend RR, Davies SR, et al. Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes. Journal of Proteome Research. 14: 422-33. PMID 25350482 DOI: 10.1021/Pr500840W  0.334
2014 Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Bayesian proteoform modeling improves protein quantification of global proteomic measurements. Molecular & Cellular Proteomics : McP. 13: 3639-46. PMID 25433089 DOI: 10.1074/Mcp.M113.030932  0.466
2014 Woo S, Cha SW, Na S, Guest C, Liu T, Smith RD, Rodland KD, Payne S, Bafna V. Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data. Proteomics. 14: 2719-30. PMID 25263569 DOI: 10.1002/Pmic.201400206  0.639
2014 Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements. Molecular & Cellular Proteomics : McP. PMID 25129695 DOI: 10.1074/mcp.O113.030932  0.371
2014 Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL, Fillmore TL, Carlson TS, Camp DG, Moore RJ, Payne SH, et al. GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization. Analytical Chemistry. 86: 6268-76. PMID 24881670 DOI: 10.1021/Ac501492F  0.403
2014 Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH. Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. Journal of the American Society For Mass Spectrometry. 25: 2020-7. PMID 24796262 DOI: 10.1007/S13361-014-0895-Y  0.338
2014 Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH. Signatures for mass spectrometry data quality. Journal of Proteome Research. 13: 2215-22. PMID 24611607 DOI: 10.1021/Pr401143E  0.377
2014 Ryu SY, Payne SH, Schaab C, Xiao W. Beyond the proteome: Mass Spectrometry Special Interest Group (MS-SIG) at ISMB/ECCB 2013. Bioinformatics (Oxford, England). 30: 2089-90. PMID 24590439 DOI: 10.1093/Bioinformatics/Btu116  0.403
2014 Tovchigrechko A, Venepally P, Payne SH. PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations. Bioinformatics (Oxford, England). 30: 1469-70. PMID 24470574 DOI: 10.1093/Bioinformatics/Btu051  0.372
2014 Slysz GW, Steinke L, Ward DM, Klatt CG, Clauss TR, Purvine SO, Payne SH, Anderson GA, Smith RD, Lipton MS. Automated data extraction from in situ protein-stable isotope probing studies. Journal of Proteome Research. 13: 1200-10. PMID 24467184 DOI: 10.1021/Pr400633J  0.368
2014 Fujimoto GM, Monroe ME, Rodriguez L, Wu C, MacLean B, Smith RD, MacCoss MJ, Payne SH. Accounting for population variation in targeted proteomics. Journal of Proteome Research. 13: 321-3. PMID 24320210 DOI: 10.1021/Pr4011052  0.375
2013 Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF, Anderson GA, Smith RD. Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. International Journal of Mass Spectrometry. 354: 312-317. PMID 25089116 DOI: 10.1016/J.Ijms.2013.06.028  0.402
2013 Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD. LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. Bioinformatics (Oxford, England). 29: 2804-5. PMID 24008421 DOI: 10.1093/Bioinformatics/Btt465  0.348
2013 Abdul Halim MF, Pfeiffer F, Zou J, Frisch A, Haft D, Wu S, Tolić N, Brewer H, Payne SH, Paša-Tolić L, Pohlschroder M. Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein. Molecular Microbiology. 88: 1164-75. PMID 23651326 DOI: 10.1111/Mmi.12248  0.319
2013 Ivankov DN, Payne SH, Galperin MY, Bonissone S, Pevzner PA, Frishman D. How many signal peptides are there in bacteria? Environmental Microbiology. 15: 983-90. PMID 23556536 DOI: 10.1111/1462-2920.12105  0.616
2013 Wu S, Brown RN, Payne SH, Meng D, Zhao R, Toli? N, Cao L, Shukla A, Monroe ME, Moore RJ, Lipton MS, Paša-Toli? L. Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans. International Journal of Proteomics. 2013: 279590. PMID 23555055 DOI: 10.1155/2013/279590  0.443
2013 Ansong C, Ortega C, Payne SH, Haft DH, Chauvignè-Hines LM, Lewis MP, Ollodart AR, Purvine SO, Shukla AK, Fortuin S, Smith RD, Adkins JN, Grundner C, Wright AT. Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis. Chemistry & Biology. 20: 123-33. PMID 23352146 DOI: 10.1016/J.Chembiol.2012.11.008  0.333
2012 Payne SH, Bonissone S, Wu S, Brown RN, Ivankov DN, Frishman D, Pasa-Tolić L, Smith RD, Pevzner PA. Unexpected diversity of signal peptides in prokaryotes. Mbio. 3. PMID 23169999 DOI: 10.1128/Mbio.00339-12  0.592
2012 Peterson ES, McCue LA, Schrimpe-Rutledge AC, Jensen JL, Walker H, Kobold MA, Webb SR, Payne SH, Ansong C, Adkins JN, Cannon WR, Webb-Robertson BJ. VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data. Bmc Genomics. 13: 131. PMID 22480257 DOI: 10.1186/1471-2164-13-131  0.399
2012 Schrimpe-Rutledge AC, Jones MB, Chauhan S, Purvine SO, Sanford JA, Monroe ME, Brewer HM, Payne SH, Ansong C, Frank BC, Smith RD, Peterson SN, Motin VL, Adkins JN. Comparative omics-driven genome annotation refinement: application across Yersiniae. Plos One. 7: e33903. PMID 22479471 DOI: 10.1371/Journal.Pone.0033903  0.432
2012 Haft DH, Payne SH, Selengut JD. Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification. Journal of Bacteriology. 194: 36-48. PMID 22037399 DOI: 10.1128/Jb.06026-11  0.333
2011 Venter E, Smith RD, Payne SH. Proteogenomic analysis of bacteria and archaea: a 46 organism case study. Plos One. 6: e27587. PMID 22114679 DOI: 10.1371/Journal.Pone.0027587  0.445
2011 Pieper R, Zhang Q, Clark DJ, Huang ST, Suh MJ, Braisted JC, Payne SH, Fleischmann RD, Peterson SN, Tzipori S. Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies. Plos One. 6: e26554. PMID 22087229 DOI: 10.1371/Journal.Pone.0026554  0.325
2011 Ansong C, Tolić N, Purvine SO, Porwollik S, Jones M, Yoon H, Payne SH, Martin JL, Burnet MC, Monroe ME, Venepally P, Smith RD, Peterson SN, Heffron F, McClelland M, et al. Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. Bmc Genomics. 12: 433. PMID 21867535 DOI: 10.1186/1471-2164-12-433  0.376
2010 Payne SH, Huang ST, Pieper R. A proteogenomic update to Yersinia: enhancing genome annotation. Bmc Genomics. 11: 460. PMID 20687929 DOI: 10.1186/1471-2164-11-460  0.365
2008 Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP. Discovery and revision of Arabidopsis genes by proteogenomics. Proceedings of the National Academy of Sciences of the United States of America. 105: 21034-8. PMID 19098097 DOI: 10.1073/Pnas.0811066106  0.732
2008 Payne SH, Yau M, Smolka MB, Tanner S, Zhou H, Bafna V. Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis. Journal of Proteome Research. 7: 3373-81. PMID 18563926 DOI: 10.1021/Pr800129M  0.734
2008 Albuquerque CP, Smolka MB, Payne SH, Bafna V, Eng J, Zhou H. A multidimensional chromatography technology for in-depth phosphoproteome analysis. Molecular & Cellular Proteomics : McP. 7: 1389-96. PMID 18407956 DOI: 10.1074/Mcp.M700468-Mcp200  0.592
2008 Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V. Accurate annotation of peptide modifications through unrestrictive database search. Journal of Proteome Research. 7: 170-81. PMID 18034453 DOI: 10.1021/Pr070444V  0.746
2006 Payne SH, Loomis WF. Retention and loss of amino acid biosynthetic pathways based on analysis of whole-genome sequences. Eukaryotic Cell. 5: 272-6. PMID 16467468 DOI: 10.1128/Ec.5.2.272-276.2006  0.317
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