Xiaokun shu, Ph.D. - Publications

Affiliations: 
2010- Pharmaceutical Chemistry University of California, San Francisco, San Francisco, CA 
Area:
Physical Biology
Website:
https://shulab.ucsf.edu

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhang Q, Schepis A, Huang H, Yang J, Ma W, Torra J, Zhang SQ, Yang L, Wu H, Nonell S, Dong Z, Kornberg TB, Coughlin SR, Shu X. Designing a green fluorogenic protease reporter by flipping a beta strand of GFP for imaging apoptosis in animals. Journal of the American Chemical Society. PMID 30821975 DOI: 10.1021/jacs.8b13042  0.48
2019 Torra J, Lafaye C, Signor L, Aumonier S, Flors C, Shu X, Nonell S, Gotthard G, Royant A. Tailing miniSOG: structural bases of the complex photophysics of a flavin-binding singlet oxygen photosensitizing protein. Scientific Reports. 9: 2428. PMID 30787421 DOI: 10.1038/s41598-019-38955-3  0.64
2018 Zhang SQ, Huang H, Yang J, Kratochvil HT, Lolicato M, Liu Y, Shu X, Liu L, DeGrado WF. Designed peptides that assemble into cross-α amyloid-like structures. Nature Chemical Biology. PMID 30061717 DOI: 10.1038/s41589-018-0105-5  0.48
2016 Makhijani K, To TL, Ruiz-González R, Lafaye C, Royant A, Shu X. Precision Optogenetic Tool for Selective Single- and Multiple-Cell Ablation in a Live Animal Model System. Cell Chemical Biology. PMID 28065655 DOI: 10.1016/j.chembiol.2016.12.010  0.64
2016 Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY. The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins. Trends in Biochemical Sciences. PMID 27814948 DOI: 10.1016/j.tibs.2016.09.010  0.8
2016 Rodriguez EA, Tran GN, Gross LA, Crisp JL, Shu X, Lin JY, Tsien RY. A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein. Nature Methods. PMID 27479328 DOI: 10.1038/nmeth.3935  0.76
2016 Feliks M, Lafaye C, Shu X, Royant A, Field M. Structural Determinants of Improved Fluorescence in a Family of Bacteriophytochrome-Based Infrared Fluorescent Proteins: Insights from Continuum Electrostatic Calculations and Molecular Dynamics Simulations. Biochemistry. PMID 27471775 DOI: 10.1021/acs.biochem.6b00295  0.64
2016 To TL, Schepis A, Ruiz-González R, Zhang Q, Yu D, Dong Z, Coughlin SR, Shu X. Rational Design of a GFP-Based Fluorogenic Caspase Reporter for Imaging Apoptosis In Vivo. Cell Chemical Biology. 23: 875-82. PMID 27447051 DOI: 10.1016/j.chembiol.2016.06.007  0.76
2016 To TL, Medzihradszky KF, Burlingame AL, DeGrado WF, Jo H, Shu X. Photoactivatable protein labeling by singlet oxygen mediated reactions. Bioorganic & Medicinal Chemistry Letters. PMID 27220724 DOI: 10.1016/j.bmcl.2016.05.034  0.76
2015 Yu D, Dong Z, Gustafson WC, Ruiz-González R, Signor L, Marzocca F, Borel F, Klassen MP, Makhijani K, Royant A, Jan YN, Weiss WA, Guo S, Shu X. Rational design of a monomeric and photostable far-red fluorescent protein for fluorescence imaging in vivo. Protein Science : a Publication of the Protein Society. PMID 26549191 DOI: 10.1002/pro.2843  0.64
2015 Wang L, Wang C, Jia Y, Liu Z, Shu X, Liu K. Resveratrol Increases Anti-Proliferative Activity of Bestatin through Downregulating P-Glycoprotein Expression via Inhibiting PI3K/Akt/mTOR Pathway in K562/ADR Cells. Journal of Cellular Biochemistry. PMID 26460589 DOI: 10.1002/jcb.25407  0.64
2015 Xiong X, Cai Z, Yang J, Shu X. Efficacy of pegaspargase in extra nodal natural killer/T-cell lymphoma nasal type: A case report from China. Journal of Cancer Research and Therapeutics. 11: 665. PMID 26458696 DOI: 10.4103/0973-1482.140750  0.48
2015 Hu Y, Li S, Liu F, Geng L, Shu X, Zhang J. Discovery of novel nonpeptide allosteric inhibitors interrupting the interaction of CDK2/cyclin A3 by virtual screening and bioassays. Bioorganic & Medicinal Chemistry Letters. PMID 26316466 DOI: 10.1016/j.bmcl.2015.08.050  0.8
2015 Ye C, Li S, Yang Y, Shu X, Zhang J, Zhang Q. Advancing analysis of spatio-temporal variations of soil nutrients in the water level fluctuation zone of China's Three Gorges Reservoir using self-organizing map. Plos One. 10: e0121210. PMID 25789612 DOI: 10.1371/journal.pone.0121210  0.8
2015 To TL, Piggott BJ, Makhijani K, Yu D, Jan YN, Shu X. Rationally designed fluorogenic protease reporter visualizes spatiotemporal dynamics of apoptosis in vivo. Proceedings of the National Academy of Sciences of the United States of America. 112: 3338-43. PMID 25733847 DOI: 10.1073/pnas.1502857112  0.76
2015 Zhao Y, Zhou Y, Zhang D, Yang J, Shi S, Shu X, Liu C. Nonreciprocal Phase Error Caused by Orthogonal Magnetic Field in a Polarization-Maintaining Fiber-Optic Gyro Ieee Sensors Journal. 15: 5128-5132. DOI: 10.1109/JSEN.2015.2435025  0.48
2015 Shu X, Zhang J, Yao D, Feng WC. Rapid and parallel content screening for detecting transformed data exposure Proceedings - Ieee Infocom. 2015: 191-196. DOI: 10.1109/INFCOMW.2015.7179383  0.8
2015 Zhang S, Zhou H, Shi X, Shu X, Liu W, Ji T, Jiang P, Sun L, Zhou J, Pan X. DISCOVERY of EXTREMELY BROAD BALMER ABSORPTION LINES in SDSS J152350.42+391405.2 Astrophysical Journal. 815. DOI: 10.1088/0004-637X/815/2/113  0.44
2015 Huang H, Chen X, Fan B, Jin Y, Shu X. Initial billet temperature influence and location investigation on tool wear in cross wedge rolling International Journal of Advanced Manufacturing Technology. 79: 1545-1556. DOI: 10.1007/s00170-015-6882-z  0.4
2014 Yu D, Gustafson WC, Han C, Lafaye C, Noirclerc-Savoye M, Ge WP, Thayer DA, Huang H, Kornberg TB, Royant A, Jan LY, Jan YN, Weiss WA, Shu X. An improved monomeric infrared fluorescent protein for neuronal and tumour brain imaging. Nature Communications. 5: 3626. PMID 24832154 DOI: 10.1038/ncomms4626  0.76
2013 Asensio CS, Sirkis DW, Maas JW, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Developmental Cell. 27: 425-37. PMID 24210660 DOI: 10.1016/j.devcel.2013.10.007  0.76
2012 Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nature Neuroscience. 15: 1742-51. PMID 23103964 DOI: 10.1038/nn.3246  0.76
2012 Ou HD, Kwiatkowski W, Deerinck TJ, Noske A, Blain KY, Land HS, Soria C, Powers CJ, May AP, Shu X, Tsien RY, Fitzpatrick JA, Long JA, Ellisman MH, Choe S, et al. A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell. 151: 304-19. PMID 23063122 DOI: 10.1016/j.cell.2012.08.035  0.76
2012 Ellisman MH, Deerinck TJ, Shu X, Sosinsky GE. Picking faces out of a crowd: genetic labels for identification of proteins in correlated light and electron microscopy imaging. Methods in Cell Biology. 111: 139-55. PMID 22857927 DOI: 10.1016/B978-0-12-416026-2.00008-X  0.76
2012 Qi YB, Garren EJ, Shu X, Tsien RY, Jin Y. Photo-inducible cell ablation in Caenorhabditis elegans using the genetically encoded singlet oxygen generating protein miniSOG. Proceedings of the National Academy of Sciences of the United States of America. 109: 7499-504. PMID 22532663 DOI: 10.1073/pnas.1204096109  0.76
2011 Shu X, Lev-Ram V, Deerinck TJ, Qi Y, Ramko EB, Davidson MW, Jin Y, Ellisman MH, Tsien RY. A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. Plos Biology. 9: e1001041. PMID 21483721 DOI: 10.1371/journal.pbio.1001041  0.76
2009 Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY. Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science (New York, N.Y.). 324: 804-7. PMID 19423828 DOI: 10.1126/science.1168683  0.76
2009 Shu X, Wang L, Colip L, Kallio K, Remington SJ. Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein. Protein Science : a Publication of the Protein Society. 18: 460-6. PMID 19165727 DOI: 10.1002/pro.66  0.76
2007 Shu X, Leiderman P, Gepshtein R, Smith NR, Kallio K, Huppert D, Remington SJ. An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V Protein Science. 16: 2703-2710. PMID 17965188 DOI: 10.1110/ps.073112007  0.76
2007 Leiderman P, Genosar L, Huppert D, Shu X, Remington SJ, Solntsev KM, Tolbert LM. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 3. Short- and long-time dynamics of the excited-state proton transfer Biochemistry. 46: 12026-12036. PMID 17918961 DOI: 10.1021/bi7009053  0.76
2007 Shi X, Abbyad P, Shu X, Kallio K, Kanchanawong P, Childs W, Remington SJ, Boxer SG. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 2. Unusual photophysical properties. Biochemistry. 46: 12014-25. PMID 17918960 DOI: 10.1021/bi700904a  0.76
2007 Shu X, Kallio K, Shi X, Abbyad P, Kanchanawong P, Childs W, Boxer SG, Remington SJ. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry. 46: 12005-13. PMID 17918959 DOI: 10.1021/bi7009037  0.76
2006 Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ. Novel chromophores and buried charges control color in mFruits. Biochemistry. 45: 9639-47. PMID 16893165 DOI: 10.1021/bi060773l  0.76
2005 Quillin ML, Anstrom DM, Shu X, O'Leary S, Kallio K, Chudakov DM, Remington SJ. Kindling fluorescent protein from Anemonia sulcata: Dark-state structure at 1.38 Å resolution Biochemistry. 44: 5774-5787. PMID 15823036 DOI: 10.1021/bi047644u  0.76
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