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Wei Niu, Ph.D. - Publications

Affiliations: 
2007 Institute for Cellular and Molecular Biology University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
proteomics, bioinformatics, systems biology
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Peng C, Li Z, Niu Z, Niu W, Xu Z, Gao H, Niu W, Wang J, He Z, Gao C, Lin P, Agrez M, Zhang Z, Niu J. Norcantharidin Suppresses Colon Cancer Cell Epithelial-Mesenchymal Transition by Inhibiting the αvβ6-ERK-Ets1 Signaling Pathway. Scientific Reports. 6: 20500. PMID 26846153 DOI: 10.1038/srep20500  0.52
2016 Huang H, Fan L, Zhan R, Wu S, Niu W. Expression of microRNA-10a, microRNA-342-3p and their predicted target gene TIAM1 in extranodal NK/T-cell lymphoma, nasal type Oncology Letters. 11: 345-351. DOI: 10.3892/ol.2015.3831  0.32
2016 Niu W, Nan M, Fan L, Wong MS, Shuang S, Dong C. A novel pH fluorescent probe based on indocyanine for imaging of living cells Dyes and Pigments. 126: 224-231. DOI: 10.1016/j.dyepig.2015.11.027  0.32
2015 Li Z, Gao C, Zhang X, He Z, Abm K, Biswas S, Niu J, Niu W. Intrahepatic biliary papillomatosis associated with malignant transformation: report of two cases and review of the literature. International Journal of Clinical and Experimental Medicine. 8: 21802-6. PMID 26885145  0.32
2015 Niu W, Guo L, Li Y, Shuang S, Dong C, Wong MS. Highly Selective Two-Photon Fluorescent Probe for Ratiometric Sensing and Imaging Cysteine in Mitochondria. Analytical Chemistry. PMID 26717855 DOI: 10.1021/acs.analchem.5b04329  0.32
2015 Li Z, Lin P, Gao C, Peng C, Liu S, Gao H, Wang B, Wang J, Niu J, Niu W. Integrin β6 acts as an unfavorable prognostic indicator and promotes cellular malignant behaviors via ERK-ETS1 pathway in pancreatic ductal adenocarcinoma (PDAC). Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26547582 DOI: 10.1007/s13277-015-4353-7  0.32
2015 Chen Y, Zhang C, Jin MN, Qin N, Qiao W, Yue XL, Duan HQ, Niu WY. Flavonoid derivative exerts an antidiabetic effect via AMPK activation in diet-induced obesity mice. Natural Product Research. 1-5. PMID 26511291 DOI: 10.1080/14786419.2015.1101105  0.4
2015 Zhang XM, Zhang L, Wang G, Niu W, He Z, Ding L, Jia J. Suppression of Mitochondrial Fission in Experimental Cerebral Ischemia: The potential neuroprotective target of p38 MAPK Inhibition. Neurochemistry International. PMID 26116440 DOI: 10.1016/j.neuint.2015.06.010  0.32
2015 Li Z, Ni CL, Niu WY, Chang BC, Chen LM. The intestinal fatty acid binding protein-2 Ala54Thr polymorphism is associated with diabetic retinopathy in Chinese population. Diabetology & Metabolic Syndrome. 7: 23. PMID 25802555 DOI: 10.1186/s13098-015-0021-8  0.4
2015 Cotney J, Muhle RA, Sanders SJ, Liu L, Willsey AJ, Niu W, Liu W, Klei L, Lei J, Yin J, Reilly SK, Tebbenkamp AT, Bichsel C, Pletikos M, Sestan N, et al. The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment. Nature Communications. 6: 6404. PMID 25752243 DOI: 10.1038/ncomms7404  0.88
2015 Niu W, Fan L, Nan M, Li Z, Lu D, Wong MS, Shuang S, Dong C. Ratiometric emission fluorescent pH probe for imaging of living cells in extreme acidity. Analytical Chemistry. 87: 2788-93. PMID 25664606 DOI: 10.1021/ac504109h  0.32
2015 Liang B, Shahbaz M, Wang Y, Gao H, Fang R, Niu Z, Liu S, Wang B, Sun Q, Niu W, Liu E, Wang J, Niu J. Integrinβ6-targeted immunoliposomes mediate tumor-specific drug delivery and enhance therapeutic efficacy in colon carcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 1183-95. PMID 25549721 DOI: 10.1158/1078-0432.CCR-14-1194  0.32
2015 Zheng L, Liu M, Wei M, Liu Y, Dong M, Luo Y, Zhao P, Dong H, Niu W, Yan Z, Li Z. Tanshinone IIA attenuates hypoxic pulmonary hypertension via modulating KV currents. Respiratory Physiology & Neurobiology. 205: 120-8. PMID 25305099 DOI: 10.1016/j.resp.2014.09.025  0.52
2015 Cai LP, Shi RH, Niu WY, Tong MW. Analysis of opportunities and challenges of the electronic dual-board in instruction Proceedings - Frontiers in Education Conference, Fie. 2015. DOI: 10.1109/FIE.2015.7344310  0.4
2015 Fan L, Gao SQ, Li ZB, Niu WF, Zhang WJ, Shuang SM, Dong C. An indole-carbazole-based ratiometric emission pH fluorescent probe for imaging extreme acidity Sensors and Actuators, B: Chemical. 221: 1069-1076. DOI: 10.1016/j.snb.2015.07.076  0.32
2015 Niu W, Lillard RS, Li Z, Ernst F. Properties of the Passive Film Formed on Interstitially Hardened AISI 316L Stainless Steel Electrochimica Acta. 176: 410-419. DOI: 10.1016/j.electacta.2015.06.102  0.4
2015 Sun H, Zhang X, Niu W. In-process cutting tool remaining useful life evaluation based on operational reliability assessment International Journal of Advanced Manufacturing Technology. 1-11. DOI: 10.1007/s00170-015-8230-8  0.32
2014 Peng C, Gao H, Niu Z, Wang B, Tan Z, Niu W, Liu E, Wang J, Sun J, Shahbaz M, Agrez M, Niu J. Integrin αvβ6 and transcriptional factor Ets-1 act as prognostic indicators in colorectal cancer. Cell & Bioscience. 4: 53. PMID 25264483 DOI: 10.1186/2045-3701-4-53  0.32
2014 Zhang L, Niu W, He Z, Zhang Q, Wu Y, Jiang C, Tang C, Hu Y, Jia J. Autophagy suppression by exercise pretreatment and p38 inhibition is neuroprotective in cerebral ischemia. Brain Research. 1587: 127-32. PMID 25192645 DOI: 10.1016/j.brainres.2014.08.067  0.32
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Niu W, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  0.88
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/nature13497  0.88
2014 Sun Q, Sun F, Wang B, Liu S, Niu W, Liu E, Peng C, Wang J, Gao H, Liang B, Niu Z, Zou X, Niu J. Interleukin-8 promotes cell migration through integrin αvβ6 upregulation in colorectal cancer. Cancer Letters. 354: 245-53. PMID 25150782 DOI: 10.1016/j.canlet.2014.08.021  0.32
2014 Gao H, Peng C, Liang B, Shahbaz M, Liu S, Wang B, Sun Q, Niu Z, Niu W, Liu E, Wang J, Lin P, Wang J, Niu J. β6 integrin induces the expression of metalloproteinase-3 and metalloproteinase-9 in colon cancer cells via ERK-ETS1 pathway. Cancer Letters. 354: 427-37. PMID 25135220 DOI: 10.1016/j.canlet.2014.08.017  0.32
2014 Brdlik CM, Niu W, Snyder M. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans. Methods in Enzymology. 539: 89-111. PMID 24581441 DOI: 10.1016/B978-0-12-420120-0.00007-4  0.88
2014 Sun ZT, Niu W, He SH, Lin DK. Different methods to extract total RNA from the knee cartilage tissue of sprague-dawley rats Chinese Journal of Tissue Engineering Research. 18: 8201-8205. DOI: 10.3969/j.issn.2095-4344.2014.51.001  0.88
2013 Willsey AJ, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell. 155: 997-1007. PMID 24267886 DOI: 10.1016/j.cell.2013.10.020  0.88
2013 Fontrodona L, Porta-de-la-Riva M, Morán T, Niu W, Díaz M, Aristizábal-Corrales D, Villanueva A, Schwartz S, Reinke V, Cerón J. RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery. Plos Genetics. 9: e1003543. PMID 23754964 DOI: 10.1371/journal.pgen.1003543  0.88
2013 Kudron M, Niu W, Lu Z, Wang G, Gerstein M, Snyder M, Reinke V. Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs. Genome Biology. 14: R5. PMID 23347407 DOI: 10.1186/gb-2013-14-1-r5  0.88
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/j.cell.2012.08.001  0.88
2011 Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M. Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. Plos Computational Biology. 7: e1002190. PMID 22125477 DOI: 10.1371/journal.pcbi.1002190  0.88
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/gr.114587.110  0.88
2011 Niu W, Hart GT, Marcotte EM. High-throughput immunofluorescence microscopy using yeast spheroplast cell-based microarrays. Methods in Molecular Biology (Clifton, N.J.). 706: 83-95. PMID 21104056 DOI: 10.1007/978-1-61737-970-3_7  0.88
2010 Lei H, Fukushige T, Niu W, Sarov M, Reinke V, Krause M. A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques. Plos One. 5: e15898. PMID 21209968 DOI: 10.1371/journal.pone.0015898  0.88
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Niu W, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/science.1196914  0.88
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/journal.pgen.1000848  0.88
2009 Narayanaswamy R, Moradi EK, Niu W, Hart GT, Davis M, McGary KL, Ellington AD, Marcotte EM. Systematic definition of protein constituents along the major polarization axis reveals an adaptive reuse of the polarization machinery in pheromone-treated budding yeast. Journal of Proteome Research. 8: 6-19. PMID 19053807 DOI: 10.1021/pr800524g  0.88
2008 Niu W, Li Z, Zhan W, Iyer VR, Marcotte EM. Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae. Plos Genetics. 4: e1000120. PMID 18617996 DOI: 10.1371/journal.pgen.1000120  0.88
2008 Zhao J, Niu W, Yao J, Mohr S, Marcotte EM, Lambowitz AM. Group II intron protein localization and insertion sites are affected by polyphosphate. Plos Biology. 6: e150. PMID 18593213 DOI: 10.1371/journal.pbio.0060150  0.88
2006 Narayanaswamy R, Niu W, Scouras AD, Hart GT, Davies J, Ellington AD, Iyer VR, Marcotte EM. Systematic profiling of cellular phenotypes with spotted cell microarrays reveals mating-pheromone response genes. Genome Biology. 7: R6. PMID 16507139 DOI: 10.1186/gb-2006-7-1-r6  0.88
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