| Year |
Citation |
Score |
| 2016 |
Ezer D, Moignard V, Göttgens B, Adryan B. Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data. Plos Computational Biology. 12: e1005072. PMID 27551778 DOI: 10.1371/Journal.Pcbi.1005072 |
0.424 |
|
| 2015 |
Ma X, Ezer D, Navarro C, Adryan B. Reliable scaling of position weight matrices for binding strength comparisons between transcription factors. Bmc Bioinformatics. 16: 265. PMID 26289072 DOI: 10.1186/S12859-015-0666-1 |
0.39 |
|
| 2015 |
Skalska L, Stojnic R, Li J, Fischer B, Cerda-Moya G, Sakai H, Tajbakhsh S, Russell S, Adryan B, Bray SJ. Chromatin signatures at Notch-regulated enhancers reveal large-scale changes in H3K56ac upon activation. The Embo Journal. 34: 1889-904. PMID 26069324 DOI: 10.15252/embj.201489923 |
0.544 |
|
| 2015 |
Zabet NR, Adryan B. Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Research. 43: 84-94. PMID 25432957 DOI: 10.1093/Nar/Gku1269 |
0.442 |
|
| 2015 |
Lin CH, Dammai V, Adryan B, Hsu T. Interaction between Nm23 and the tumor suppressor VHL. Naunyn-Schmiedeberg's Archives of Pharmacology. 388: 143-52. PMID 24915993 DOI: 10.1007/s00210-014-1002-4 |
0.559 |
|
| 2014 |
Ezer D, Zabet NR, Adryan B. Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression. Computational and Structural Biotechnology Journal. 10: 63-9. PMID 25349675 DOI: 10.1016/J.Csbj.2014.07.005 |
0.456 |
|
| 2014 |
Torella R, Li J, Kinrade E, Cerda-Moya G, Contreras AN, Foy R, Stojnic R, Glen RC, Kovall RA, Adryan B, Bray SJ. A combination of computational and experimental approaches identifies DNA sequence constraints associated with target site binding specificity of the transcription factor CSL. Nucleic Acids Research. 42: 10550-63. PMID 25114055 DOI: 10.1093/Nar/Gku730 |
0.401 |
|
| 2014 |
Ezer D, Zabet NR, Adryan B. Physical constraints determine the logic of bacterial promoter architectures. Nucleic Acids Research. 42: 4196-207. PMID 24476912 DOI: 10.1093/Nar/Gku078 |
0.43 |
|
| 2013 |
Zabet NR, Adryan B. The effects of transcription factor competition on gene regulation. Frontiers in Genetics. 4: 197. PMID 24109486 DOI: 10.3389/Fgene.2013.00197 |
0.341 |
|
| 2013 |
Zabet NR, Foy R, Adryan B. The influence of transcription factor competition on the relationship between occupancy and affinity. Plos One. 8: e73714. PMID 24086290 DOI: 10.1371/Journal.Pone.0073714 |
0.405 |
|
| 2013 |
Schep AN, Adryan B. A comparative analysis of transcription factor expression during metazoan embryonic development. Plos One. 8: e66826. PMID 23799133 DOI: 10.1371/journal.pone.0066826 |
0.363 |
|
| 2013 |
Jin H, Stojnic R, Adryan B, Ozdemir A, Stathopoulos A, Frasch M. Genome-wide screens for in vivo Tinman binding sites identify cardiac enhancers with diverse functional architectures. Plos Genetics. 9: e1003195. PMID 23326246 DOI: 10.1371/Journal.Pgen.1003195 |
0.407 |
|
| 2012 |
Stojnic R, Fu AQ, Adryan B. A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles. Plos Computational Biology. 8: e1002725. PMID 23144600 DOI: 10.1371/journal.pcbi.1002725 |
0.471 |
|
| 2012 |
Zabet NR, Adryan B. Computational models for large-scale simulations of facilitated diffusion. Molecular Biosystems. 8: 2815-27. PMID 22892851 DOI: 10.1039/C2Mb25201E |
0.394 |
|
| 2012 |
Zabet NR, Adryan B. A comprehensive computational model of facilitated diffusion in prokaryotes. Bioinformatics (Oxford, England). 28: 1517-24. PMID 22492644 DOI: 10.1093/Bioinformatics/Bts178 |
0.436 |
|
| 2012 |
Zabet NR, Adryan B. GRiP: a computational tool to simulate transcription factor binding in prokaryotes. Bioinformatics (Oxford, England). 28: 1287-9. PMID 22426343 DOI: 10.1093/Bioinformatics/Bts132 |
0.431 |
|
| 2012 |
Adryan B, Russell S. Genome mapping and genomics in drosophila Genome Mapping and Genomics in Animals. 4: 31-86. DOI: 10.1007/978-3-642-31316-5-3 |
0.437 |
|
| 2011 |
Rotstein B, Molnar D, Adryan B, Llimargas M. Tramtrack is genetically upstream of genes controlling tracheal tube size in Drosophila. Plos One. 6: e28985. PMID 22216153 DOI: 10.1371/journal.pone.0028985 |
0.456 |
|
| 2011 |
Thiel UJ, Feltens R, Adryan B, Gieringer R, Brochhausen C, Schuon R, Fillies T, Grus F, Mann WJ, Brieger J. Analysis of differentially expressed proteins in oral squamous cell carcinoma by MALDI-TOF MS. Journal of Oral Pathology & Medicine : Official Publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology. 40: 369-79. PMID 21166718 DOI: 10.1111/j.1600-0714.2010.00982.x |
0.324 |
|
| 2010 |
Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA. The impact of gene expression regulation on evolution of extracellular signaling pathways. Molecular & Cellular Proteomics : McP. 9: 2666-77. PMID 20935258 DOI: 10.1074/Mcp.M110.003020 |
0.412 |
|
| 2010 |
Martin S, Söllner C, Charoensawan V, Adryan B, Thisse B, Thisse C, Teichmann S, Wright GJ. Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Molecular & Cellular Proteomics : McP. 9: 2654-65. PMID 20802085 DOI: 10.1074/Mcp.M110.004119 |
0.358 |
|
| 2010 |
Brieger A, Adryan B, Wolpert F, Passmann S, Zeuzem S, Trojan J. Cytoskeletal scaffolding proteins interact with Lynch-Syndrome associated mismatch repair protein MLH1. Proteomics. 10: 3343-55. PMID 20706999 DOI: 10.1002/pmic.200900672 |
0.346 |
|
| 2010 |
Bernard F, Krejci A, Housden B, Adryan B, Bray SJ. Specificity of Notch pathway activation: twist controls the transcriptional output in adult muscle progenitors. Development (Cambridge, England). 137: 2633-42. PMID 20610485 DOI: 10.1242/dev.053181 |
0.455 |
|
| 2010 |
Adryan B, Teichmann SA. The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biology. 11: R40. PMID 20384991 DOI: 10.1186/Gb-2010-11-4-R40 |
0.456 |
|
| 2010 |
Pfreundt U, James DP, Tweedie S, Wilson D, Teichmann SA, Adryan B. FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Research. 38: D443-7. PMID 19884132 DOI: 10.1093/Nar/Gkp910 |
0.442 |
|
| 2010 |
Massie C, Lynch A, Stark R, Ramos-Montoya A, Fazli L, Warren A, Scott H, Bon H, Sharma N, Zecchini V, Matthews N, Osborne M, Hadfield J, Swatton J, McArthur S, ... Adryan B, et al. Abstract 1714: Transcriptional networks downstream of the AR identify clinically relevant prostate cancer targets Cancer Research. 70: 1714-1714. DOI: 10.1158/1538-7445.Am10-1714 |
0.367 |
|
| 2009 |
Fu AQ, Adryan B. Scoring overlapping and adjacent signals from genome-wide ChIP and DamID assays. Molecular Biosystems. 5: 1429-38. PMID 19763325 DOI: 10.1039/B906880e |
0.405 |
|
| 2009 |
Aleksic J, Lazic R, Müller I, Russell SR, Adryan B. Biases in Drosophila melanogaster protein trap screens. Bmc Genomics. 10: 249. PMID 19476619 DOI: 10.1186/1471-2164-10-249 |
0.675 |
|
| 2008 |
Gleixner E, Abriss D, Adryan B, Kraemer M, Gerlach F, Schuh R, Burmester T, Hankeln T. Oxygen-induced changes in hemoglobin expression in Drosophila. The Febs Journal. 275: 5108-16. PMID 18795948 DOI: 10.1111/j.1742-4658.2008.06642.x |
0.504 |
|
| 2008 |
Kwong C, Adryan B, Bell I, Meadows L, Russell S, Manak JR, White R. Stability and dynamics of polycomb target sites in Drosophila development. Plos Genetics. 4: e1000178. PMID 18773083 DOI: 10.1371/journal.pgen.1000178 |
0.611 |
|
| 2008 |
Pollock RF, Adryan B. BioSAVE: display of scored annotation within a sequence context. Bmc Bioinformatics. 9: 157. PMID 18366701 DOI: 10.1186/1471-2105-9-157 |
0.315 |
|
| 2007 |
Adryan B, Teichmann SA. Computational identification of site-specific transcription factors in Drosophila. Fly. 1: 142-5. PMID 18820428 DOI: 10.4161/Fly.4571 |
0.452 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Adryan B, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.382 |
|
| 2007 |
Massie CE, Adryan B, Barbosa-Morais NL, Lynch AG, Tran MG, Neal DE, Mills IG. New androgen receptor genomic targets show an interaction with the ETS1 transcription factor. Embo Reports. 8: 871-8. PMID 17721441 DOI: 10.1038/sj.embor.7401046 |
0.433 |
|
| 2007 |
Adryan B, Woerfel G, Birch-Machin I, Gao S, Quick M, Meadows L, Russell S, White R. Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila. Genome Biology. 8: R167. PMID 17705839 DOI: 10.1186/gb-2007-8-8-r167 |
0.598 |
|
| 2007 |
Holohan EE, Kwong C, Adryan B, Bartkuhn M, Herold M, Renkawitz R, Russell S, White R. CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. Plos Genetics. 3: e112. PMID 17616980 DOI: 10.1371/journal.pgen.0030112 |
0.589 |
|
| 2007 |
Stahl M, Schuh R, Adryan B. Identification of FGF-dependent genes in the Drosophila tracheal system. Gene Expression Patterns : Gep. 7: 202-9. PMID 16949886 DOI: 10.1016/j.modgep.2006.07.005 |
0.611 |
|
| 2006 |
Adryan B, Teichmann SA. FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster. Bioinformatics (Oxford, England). 22: 1532-3. PMID 16613907 DOI: 10.1093/Bioinformatics/Btl143 |
0.467 |
|
| 2004 |
Adryan B, Schuh R. Gene-Ontology-based clustering of gene expression data. Bioinformatics (Oxford, England). 20: 2851-2. PMID 15117760 DOI: 10.1093/bioinformatics/bth289 |
0.542 |
|
| 2003 |
Dammai V, Adryan B, Lavenburg KR, Hsu T. Drosophila awd, the homolog of human nm23, regulates FGF receptor levels and functions synergistically with shi/dynamin during tracheal development. Genes & Development. 17: 2812-24. PMID 14630942 DOI: 10.1101/gad.1096903 |
0.546 |
|
| 2000 |
Adryan B, Decker HJ, Papas TS, Hsu T. Tracheal development and the von Hippel-Lindau tumor suppressor homolog in Drosophila. Oncogene. 19: 2803-11. PMID 10851083 DOI: 10.1038/sj.onc.1203611 |
0.55 |
|
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