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Nathan A. Tanner, Ph.D. - Publications

Affiliations: 
2010 Harvard University, Cambridge, MA, United States 
Area:
Molecular microscopy and spectroscopy
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28/57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Nye DB, Tanner NA. Chimeric DNA byproducts in strand displacement amplification using the T7 replisome. Plos One. 17: e0273979. PMID 36121810 DOI: 10.1371/journal.pone.0273979  0.632
2021 Hunt EA, Tamanaha E, Bonanno K, Cantor EJ, Tanner NA. Profiling Argonaute Guide DNA Sequence Preferences by Functional Screening. Frontiers in Molecular Biosciences. 8: 670940. PMID 33996915 DOI: 10.3389/fmolb.2021.670940  0.318
2020 Scott AT, Layne TR, O'Connell K, Tanner NA, Landers JP. Comparative evaluation and quantitative analysis of loop-mediated isothermal amplification indicators. Analytical Chemistry. PMID 32838514 DOI: 10.1021/Acs.Analchem.0C02666  0.317
2020 Zhang Y, Ren G, Buss J, Barry AJ, Patton GC, Tanner NA. Enhancing colorimetric loop-mediated isothermal amplification speed and sensitivity with guanidine chloride. Biotechniques. PMID 32635743 DOI: 10.2144/Btn-2020-0078  0.411
2020 Rubinfien J, Atabay KD, Nichols NM, Tanner NA, Pezza JA, Gray MM, Wagner BM, Poppin JN, Aken JT, Gleason EJ, Foley KD, Copeland DS, Kraves S, Alvarez Saavedra E. Nucleic acid detection aboard the International Space Station by colorimetric loop-mediated isothermal amplification (LAMP). Faseb Bioadvances. 2: 160-165. PMID 32161905 DOI: 10.1096/fba.2019-00088  0.39
2018 Hunt EA, Evans TC, Tanner NA. Single-stranded binding proteins and helicase enhance the activity of prokaryotic argonautes in vitro. Plos One. 13: e0203073. PMID 30157272 DOI: 10.1371/Journal.Pone.0203073  0.619
2018 Potapov V, Fu X, Dai N, Corrêa IR, Tanner NA, Ong JL. Base modifications affecting RNA polymerase and reverse transcriptase fidelity. Nucleic Acids Research. PMID 29750267 DOI: 10.1093/Nar/Gky341  0.405
2018 Zhang Y, Tanner NA. Author Correction: Isothermal Amplification of Long, Discrete DNA Fragments Facilitated by Single-Stranded Binding Protein. Scientific Reports. 8: 4156. PMID 29500412 DOI: 10.1038/S41598-018-22186-Z  0.5
2017 Calvert AE, Biggerstaff BJ, Tanner NA, Lauterbach M, Lanciotti RS. Rapid colorimetric detection of Zika virus from serum and urine specimens by reverse transcription loop-mediated isothermal amplification (RT-LAMP). Plos One. 12: e0185340. PMID 28945787 DOI: 10.1371/Journal.Pone.0185340  0.305
2017 Zhang Y, Tanner NA. Isothermal Amplification of Long, Discrete DNA Fragments Facilitated by Single-Stranded Binding Protein. Scientific Reports. 7: 8497. PMID 28819114 DOI: 10.1038/S41598-017-09063-X  0.689
2017 Poole CB, Li Z, Alhassan A, Guelig D, Diesburg S, Tanner NA, Zhang Y, Evans TC, LaBarre P, Wanji S, Burton RA, Carlow CK. Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP). Plos One. 12: e0169011. PMID 28199317 DOI: 10.1371/Journal.Pone.0169011  0.465
2016 Schermerhorn KM, Tanner N, Kelman Z, Gardner AF. High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases. Nucleic Acids Research. PMID 27382065 DOI: 10.1093/Nar/Gkw612  0.704
2015 Poole CB, Ettwiller L, Tanner NA, Evans TC, Wanji S, Carlow CK. Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated Isothermal Amplification. Plos One. 10: e0139286. PMID 26414073 DOI: 10.1371/Journal.Pone.0139286  0.454
2015 Tanner NA, Zhang Y, Evans TC. Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes. Biotechniques. 58: 59-68. PMID 25652028 DOI: 10.2144/000114253  0.35
2014 Tanner NA, Evans TC. Loop-mediated isothermal amplification for detection of nucleic acids. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 105: Unit 15.14.. PMID 24510439 DOI: 10.1002/0471142727.Mb1514S105  0.418
2012 Poole CB, Tanner NA, Zhang Y, Evans TC, Carlow CK. Diagnosis of brugian filariasis by loop-mediated isothermal amplification. Plos Neglected Tropical Diseases. 6: e1948. PMID 23272258 DOI: 10.1371/Journal.Pntd.0001948  0.626
2012 Tanner NA, Zhang Y, Evans TC. Simultaneous multiple target detection in real-time loop-mediated isothermal amplification. Biotechniques. 53: 81-9. PMID 23030060 DOI: 10.2144/0000113902  0.597
2011 Tanner NA, Tolun G, Loparo JJ, Jergic S, Griffith JD, Dixon NE, van Oijen AM. E. coli DNA replication in the absence of free β clamps. The Embo Journal. 30: 1830-40. PMID 21441898 DOI: 10.1038/Emboj.2011.84  0.766
2011 Williams K, Grafe B, Burke KM, Tanner N, Van Oijen AM, Loparo J, Price AC. A single molecule DNA flow stretching microscope for undergraduates American Journal of Physics. 79: 1112-1120. DOI: 10.1119/1.3620410  0.755
2010 Tanner NA, van Oijen AM. Visualizing DNA replication at the single-molecule level. Methods in Enzymology. 475: 259-78. PMID 20627161 DOI: 10.1016/S0076-6879(10)75011-4  0.791
2010 Kulczyk AW, Tanner NA, Loparo JJ, Richardson CC, van Oijen AM. Direct observation of enzymes replicating DNA using a single-molecule DNA stretching assay. Journal of Visualized Experiments : Jove. PMID 20332766 DOI: 10.3791/1689  0.792
2009 Tanner NA, Loparo JJ, van Oijen AM. Visualizing Single-molecule DNA Replication with Fluorescence Microscopy. Journal of Visualized Experiments : Jove. PMID 19820685 DOI: 10.3791/1529  0.79
2009 Tanner NA, van Oijen AM. Single-molecule observation of prokaryotic DNA replication. Methods in Molecular Biology (Clifton, N.J.). 521: 397-410. PMID 19563119 DOI: 10.1007/978-1-60327-815-7_22  0.73
2009 Tanner NA, Loparo JJ, Hamdan SM, Jergic S, Dixon NE, van Oijen AM. Real-time single-molecule observation of rolling-circle DNA replication. Nucleic Acids Research. 37: e27. PMID 19155275 DOI: 10.1093/Nar/Gkp006  0.799
2009 Tanner NA. Single-Molecule Studies of Fork Dynamics in E. coli DNA Replication Biophysical Journal. 96: 342a. DOI: 10.1016/J.Bpj.2008.12.1715  0.658
2008 Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nature Structural & Molecular Biology. 15: 998. PMID 18769472 DOI: 10.1038/nsmb0908-998a  0.749
2008 Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nature Structural & Molecular Biology. 15: 170-6. PMID 18223657 DOI: 10.1038/Nsmb.1381  0.747
2007 Hamdan SM, Johnson DE, Tanner NA, Lee JB, Qimron U, Tabor S, van Oijen AM, Richardson CC. Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement. Molecular Cell. 27: 539-49. PMID 17707227 DOI: 10.1016/J.Molcel.2007.06.020  0.763
Low-probability matches (unlikely to be authored by this person)
2016 Alhassan A, Osei-Atweneboana MY, Kyeremeh KF, Poole CB, Li Z, Tettevi E, Tanner NA, Carlow CK. Comparison of a New Visual Isothermal Nucleic Acid Amplification Test with PCR and Skin Snip Analysis for Diagnosis of Onchocerciasis in Humans. Molecular and Biochemical Parasitology. PMID 27473357 DOI: 10.1016/J.Molbiopara.2016.07.006  0.287
2022 Zhang Y, Hunt EA, Tamanaha E, Corrêa IR, Tanner NA. Improved visual detection of DNA amplification using pyridylazophenol metal sensing dyes. Communications Biology. 5: 999. PMID 36130997 DOI: 10.1038/s42003-022-03973-x  0.267
2022 Zhang Y, Tanner NA. Efficient multiplexing and variant discrimination in reverse-transcription loop-mediated isothermal amplification with sequence-specific hybridization probes. Biotechniques. 73: 247-255. PMID 36321500 DOI: 10.2144/btn-2022-0096  0.25
2015 Tanner NA, Borgaro JG, Yigit E, Johnson D, Menin JF, Dimalanta ET, Nichols N. QPCR-Based Library Quantitation Genetic Engineering and Biotechnology News. 35: 24-25. DOI: 10.1089/Gen.35.19.11  0.249
2021 Layne T, Jackson K, Scott A, Tanner NA, Piland A, Haverstick DM, Landers JP. Optimization of novel loop-mediated isothermal amplification with colorimetric image analysis for forensic body fluid identification. Journal of Forensic Sciences. PMID 33559876 DOI: 10.1111/1556-4029.14682  0.216
2023 Li Z, Sinha A, Zhang Y, Tanner N, Cheng HT, Premsrirut P, Carlow CKS. Extraction-free LAMP assays for generic detection of Old World Orthopoxviruses and specific detection of Mpox virus. Scientific Reports. 13: 21093. PMID 38036581 DOI: 10.1038/s41598-023-48391-z  0.209
2021 Zhang Y, Tanner NA. Development of multiplexed reverse-transcription loop-mediated isothermal amplification for detection of SARS-CoV-2 and influenza viral RNA. Biotechniques. 70: 167-174. PMID 33535813 DOI: 10.2144/btn-2020-0157  0.202
2022 Tamanaha E, Zhang Y, Tanner NA. Profiling RT-LAMP tolerance of sequence variation for SARS-CoV-2 RNA detection. Plos One. 17: e0259610. PMID 35324900 DOI: 10.1371/journal.pone.0259610  0.198
2021 Natoli ME, Kundrod KA, Chang MM, Smith CA, Paul S, Coole JB, Butlin NG, Tanner NA, Baker E, Schmeler KM, Richards-Kortum R. Improving Performance of a SARS-CoV-2 RT-LAMP Assay for Use With a Portable Isothermal Fluorimeter: Towards a Point-of-Care Molecular Testing Strategy. Journal of Biomolecular Techniques : Jbt. 32: 180-185. PMID 35027875 DOI: 10.7171/jbt.21-3203-013  0.19
2022 Zhang Y, Tanner NA. Improving RT-LAMP detection of SARS-CoV-2 RNA through primer set selection and combination. Plos One. 17: e0254324. PMID 35363770 DOI: 10.1371/journal.pone.0254324  0.163
2022 Li Z, Bruce JL, Cohen B, Cunningham CV, Jack WE, Kunin K, Langhorst BW, Miller J, Moncion RA, Poole CB, Premsrirut PK, Ren G, Roberts RJ, Tanner NA, Zhang Y, et al. Development and implementation of a simple and rapid extraction-free saliva SARS-CoV-2 RT-LAMP workflow for workplace surveillance. Plos One. 17: e0268692. PMID 35617204 DOI: 10.1371/journal.pone.0268692  0.141
2021 Anahtar MN, McGrath GEG, Rabe BA, Tanner NA, White BA, Lennerz JKM, Branda JA, Cepko CL, Rosenberg ES. Clinical Assessment and Validation of a Rapid and Sensitive SARS-CoV-2 Test Using Reverse Transcription Loop-Mediated Isothermal Amplification Without the Need for RNA Extraction. Open Forum Infectious Diseases. 8: ofaa631. PMID 34853795 DOI: 10.1093/ofid/ofaa631  0.137
2022 Moore KJM, Cahill J, Aidelberg G, Aronoff R, Bektaş A, Bezdan D, Butler DJ, Chittur SV, Codyre M, Federici F, Tanner NA, Tighe SW, True R, Ware SB, Wyllie AL, et al. Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications. Journal of Biomolecular Techniques : Jbt. 32: 228-275. PMID 35136384 DOI: 10.7171/jbt.21-3203-017  0.123
2024 Lund S, Potapov V, Johnson SR, Buss J, Tanner NA. Highly Parallelized Construction of DNA from Low-Cost Oligonucleotide Mixtures Using Data-Optimized Assembly Design and Golden Gate. Acs Synthetic Biology. PMID 38377591 DOI: 10.1021/acssynbio.3c00694  0.12
2020 Butler DJ, Mozsary C, Meydan C, Danko D, Foox J, Rosiene J, Shaiber A, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, ... ... Tanner N, et al. Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions. Biorxiv : the Preprint Server For Biology. PMID 32511352 DOI: 10.1101/2020.04.20.048066  0.115
2002 Tanner NA, Farrar CR, Sohn H. Structural health monitoring using wireless sensing system with embedded processing Proceedings of Spie - the International Society For Optical Engineering. 4704: 215-224. DOI: 10.1117/12.470728  0.114
2002 Tanner NA, Farrar CR. Demonstration of damage detection with a wireless sensor network Proceedings of Spie - the International Society For Optical Engineering. 4753: 617-622.  0.11
2003 Tanner NA, Wait JR, Farrar CR, Sohn H. Structural health monitoring using modular wireless sensors Journal of Intelligent Material Systems and Structures. 14: 43-56. DOI: 10.1177/1045389X03014001005  0.106
2021 Butler D, Mozsary C, Meydan C, Foox J, Rosiene J, Shaiber A, Danko D, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, ... ... Tanner NA, et al. Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions. Nature Communications. 12: 1660. PMID 33712587 DOI: 10.1038/s41467-021-21361-7  0.102
2020 Schermer B, Fabretti F, Damagnez M, Di Cristanziano V, Heger E, Arjune S, Tanner NA, Imhof T, Koch M, Ladha A, Joung J, Gootenberg JS, Abudayyeh OO, Burst V, Zhang F, et al. Rapid SARS-CoV-2 testing in primary material based on a novel multiplex RT-LAMP assay. Plos One. 15: e0238612. PMID 33137122 DOI: 10.1371/journal.pone.0238612  0.102
2005 Tanner NA, Niemeyer G. High frequency acceleration feedback in wave variable telerobotics American Society of Mechanical Engineers, Dynamic Systems and Control Division (Publication) Dsc. 74: 1617-1625. DOI: 10.1115/IMECE2005-81606  0.091
2006 Tanner NA, Niemeyer G. High-frequency acceleration feedback in wave variable telerobotics Ieee/Asme Transactions On Mechatronics. 11: 119-127. DOI: 10.1109/Tmech.2006.871086  0.086
2007 Diolaiti N, Niemeyer G, Tanner NA. Wave haptics: Building stiff controllers from the natural motor dynamics International Journal of Robotics Research. 26: 5-21. DOI: 10.1177/0278364907073779  0.083
2006 Tanner NA, Niemeyer G. Stabilization through gyration: A wave variable approach to high frequency force feedback in telerobotics 14th Symposium Onhaptics Interfaces For Virtual Environment Andteleoperator Systems 2006 - Proceedings. 2006: 153-159. DOI: 10.1109/VR.2006.124  0.08
2005 Tanner NA, Niemeyer G. Improving perception in time delayed teleoperation Proceedings - Ieee International Conference On Robotics and Automation. 2005: 354-359. DOI: 10.1109/ROBOT.2005.1570144  0.079
2005 Tanner NA, Niemeyer G. Improving perception in time-delayed telerobotics International Journal of Robotics Research. 24: 631-644. DOI: 10.1177/0278364905056261  0.074
2004 Tanner NA, Niemeyer G. Practical limitations of wave variable controllers in teleoperation 2004 Ieee Conference On Robotics, Automation and Mechatronics. 25-30.  0.056
2004 Tanner NA, Niemeyer G. Online tuning of wave impedance in telerobotics 2004 Ieee Conference On Robotics, Automation and Mechatronics. 7-12.  0.051
2008 McAllister SM, Dickson NP, Sharples K, Reid MR, Morgan JM, MacDonald EJ, Coughlan E, Johnston TM, Tanner NA, Paul C. Unlinked anonymous HIV prevalence among New Zealand sexual health clinic attenders: 2005-2006. International Journal of Std & Aids. 19: 752-7. PMID 18931268 DOI: 10.1258/ijsa.2008.008153  0.011
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