Anna B. Loveland, Ph.D. - Related publications

Affiliations: 
2012 Biophysics Harvard University, Cambridge, MA, United States 
Area:
Molecular microscopy and spectroscopy
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014   
2021 Stracy M, Schweizer J, Sherratt DJ, Kapanidis AN, Uphoff S, Lesterlin C. Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins. Molecular Cell. PMID 33621478 DOI: 10.1016/j.molcel.2021.01.039   
2021 Cohan B, Frappier L. Herpesvirus DNA Polymerase Processivity Factors: Not just for DNA Synthesis. Virus Research. 198394. PMID 33775751 DOI: 10.1016/j.virusres.2021.198394   
2021 Li PF, Xiang YG, Zhang D, Lu N, Dou Q, Tan L. Downregulation of DNA ligases in trophoblasts contributes to recurrent pregnancy loss through inducing DNA damages. Placenta. 106: 7-14. PMID 33601221 DOI: 10.1016/j.placenta.2021.02.001   
2021 Vouzas AE, Gilbert DM. Mammalian DNA Replication Timing. Cold Spring Harbor Perspectives in Biology. PMID 33558366 DOI: 10.1101/cshperspect.a040162   
2021 Kapp JD, Green RE, Shapiro B. A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA. The Journal of Heredity. PMID 33768239 DOI: 10.1093/jhered/esab012   
2021 Burgess JT, Cheong CM, Suraweera A, Sobanski T, Beard S, Dave K, Rose M, Boucher D, Croft LV, Adams MN, O'Byrne K, Richard DJ, Bolderson E. Barrier-to-autointegration-factor (Banf1) modulates DNA double-strand break repair pathway choice via regulation of DNA-dependent kinase (DNA-PK) activity. Nucleic Acids Research. PMID 33660778 DOI: 10.1093/nar/gkab110   
2021 Mustafa M, Ali A, Siddiqui SA, Mir AR, Kausar T, Nayeem SM, Abidi M, Habib S. Biophysical characterization of structural and conformational changes in methylmethane sulfonate modified DNA leading to the frizzled backbone structure and strand breaks in DNA. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33719845 DOI: 10.1080/07391102.2021.1899051   
2021 Pauszek RF, Lamichhane R, Rajkarnikar Singh A, Millar DP. Single-molecule view of coordination in a multi-functional DNA polymerase. Elife. 10. PMID 33704066 DOI: 10.7554/eLife.62046   
2021 McKie SJ, Neuman KC, Maxwell A. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000286. PMID 33480441 DOI: 10.1002/bies.202000286   
2021 Lo YMD, Han DSC, Jiang P, Chiu RWK. Epigenetics, fragmentomics, and topology of cell-free DNA in liquid biopsies. Science (New York, N.Y.). 372. PMID 33833097 DOI: 10.1126/science.aaw3616   
2021 Fabbrizi MR, Hughes JR, Parsons JL. The Enzyme-Modified Neutral Comet (EMNC) Assay for Complex DNA Damage Detection. Methods and Protocols. 4. PMID 33669320 DOI: 10.3390/mps4010014   
2021 Aparicio Casado T, Gautier J. DNA Damage Response in Xenopus laevis Cell-Free Extracts. Methods in Molecular Biology (Clifton, N.J.). 2267: 103-144. PMID 33786788 DOI: 10.1007/978-1-0716-1217-0_8   
2021 Kim SH, Kim H, Jeong H, Yoon TY. Encoding Multiple Virtual Signals in DNA Barcodes with Single-Molecule FRET. Nano Letters. PMID 33586985 DOI: 10.1021/acs.nanolett.0c04502   
2021 Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7   
2021 Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720   
2021 Clauvelin N, Olson WK. Synergy between Protein Positioning and DNA Elasticity: Energy Minimization of Protein-Decorated DNA Minicircles. The Journal of Physical Chemistry. B. 125: 2277-2287. PMID 33635080 DOI: 10.1021/acs.jpcb.0c11612   
2021 Sui J, Gandotra N, Xie P, Lin Z, Scharfe C, Javanmard M. Multi-frequency impedance sensing for detection and sizing of DNA fragments. Scientific Reports. 11: 6490. PMID 33753781 DOI: 10.1038/s41598-021-85755-9   
2021 Iaccarino N, Cheng M, Qiu D, Pagano B, Amato J, Di Porzio A, Zhou J, Randazzo A, Mergny JL. Effects of sequence and base composition on the CD and TDS profiles of i-DNA. Angewandte Chemie (International Ed. in English). PMID 33617090 DOI: 10.1002/anie.202016822   
2021 Liang CC, Cohn MA. Purification of DNA repair protein complexes from mammalian cells. Star Protocols. 2: 100348. PMID 33665628 DOI: 10.1016/j.xpro.2021.100348   
2021 Hong CA, Park JC, Na H, Jeon H, Nam YS. Short DNA-catalyzed formation of quantum dot-DNA hydrogel for enzyme-free femtomolar specific DNA assay. Biosensors & Bioelectronics. 182: 113110. PMID 33812283 DOI: 10.1016/j.bios.2021.113110   
2021 Gao X, Zhang K, Lu T, Zhao Y, Zhou H, Yu Y, Zellmer L, He Y, Huang H, Joshua Liao D. A reassessment of several erstwhile methods for isolating DNA fragments from agarose gels. 3 Biotech. 11: 138. PMID 33692931 DOI: 10.1007/s13205-021-02691-1   
2021 Shendi AM, Davenport A. The difference between delivered and prescribed dialysate sodium in haemodialysis machines. Clinical Kidney Journal. 14: 863-868. PMID 33777369 DOI: 10.1093/ckj/sfaa022   
2021 Biber S, Wiesmüller L. Analysis of Replication Dynamics Using the Single-Molecule DNA Fiber Spreading Assay. Methods in Molecular Biology (Clifton, N.J.). 2267: 57-71. PMID 33786784 DOI: 10.1007/978-1-0716-1217-0_4   
2021 Hai H, Chen C, Chen D, Li P, Shan Y, Li J. A sensitive electrochemiluminescence DNA biosensor based on the signal amplification of ExoIII enzyme-assisted hybridization chain reaction combined with nanoparticle-loaded multiple probes. Mikrochimica Acta. 188: 125. PMID 33723966 DOI: 10.1007/s00604-021-04777-2   
2021 Ishida H, Kono H. Torsional stress can regulate the unwrapping of two outer half superhelical turns of nucleosomal DNA. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33558240 DOI: 10.1073/pnas.2020452118   
2021 Dai L, Liu P, Hu X, Zhao X, Shao G, Tian Y. DNA origami: an outstanding platform for functions in nanophotonics and cancer therapy. The Analyst. PMID 33595553 DOI: 10.1039/d0an02160a   
2021 Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y   
2021 Vaidyanathan S, Weerakoon-Ratnayake KM, Uba FI, Hu B, Kaufman D, Choi J, Park S, Soper SA. Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules. Lab On a Chip. PMID 33651049 DOI: 10.1039/d0lc01038c   
2021 Shen BW, Quispe JD, Luyten Y, McGough BE, Morgan RD, Stoddard BL. Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure (London, England : 1993). PMID 33826880 DOI: 10.1016/j.str.2021.03.012   
2021 Zhang M, Yang C, Tasan I, Zhao H. Expanding the Potential of Mammalian Genome Engineering Targeted DNA Integration. Acs Synthetic Biology. PMID 33596056 DOI: 10.1021/acssynbio.0c00576   
2021 Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221   
2021 Lee KJ, Li Z. The CRK2-CYC13 complex functions as an S-phase cyclin-dependent kinase to promote DNA replication in Trypanosoma brucei. Bmc Biology. 19: 29. PMID 33568178 DOI: 10.1186/s12915-021-00961-1   
2021 Loveless TB, Grotts JH, Schechter MW, Forouzmand E, Carlson CK, Agahi BS, Liang G, Ficht M, Liu B, Xie X, Liu CC. Lineage tracing and analog recording in mammalian cells by single-site DNA writing. Nature Chemical Biology. PMID 33753928 DOI: 10.1038/s41589-021-00769-8   
2021 Li Y, Gao H, Qi Z, Huang Z, Ma L, Liu J. Freezing-assisted Conjugation of Unmodified Diblock DNA to Hydrogel Nanoparticles and Monoliths for DNA and Hg2+ Sensing. Angewandte Chemie (International Ed. in English). PMID 33792133 DOI: 10.1002/anie.202102330   
2021 Wang H, Elber R. Catalytic Magnesium as a Door Stop for DNA Sliding. The Journal of Physical Chemistry. B. PMID 33819040 DOI: 10.1021/acs.jpcb.1c00122   
2021 Fang N, Wang K, Tong D. An Algorithm for Gene Fragment Reconstruction. Interdisciplinary Sciences, Computational Life Sciences. PMID 33609237 DOI: 10.1007/s12539-021-00419-6   
2021 Aktas GB, Ribera A, Skouridou V, Masip L. DNA immobilization and detection using DNA binding proteins. Analytical and Bioanalytical Chemistry. PMID 33501551 DOI: 10.1007/s00216-021-03162-5   
2021 Jiang H, Greenberg RA. Morning for irofulven, what could be fiNER? Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33472911 DOI: 10.1158/1078-0432.CCR-20-4708   
2021 Dilley K, Pagan F, Chapman B. Methods for ensuring the highest DNA concentration and yield in future and retrospective trace DNA extracts. Science & Justice : Journal of the Forensic Science Society. 61: 193-197. PMID 33736853 DOI: 10.1016/j.scijus.2020.11.005   
2021 Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12: 1053. PMID 33594049 DOI: 10.1038/s41467-021-21243-y   
2021 Neidle S. Beyond the double helix: DNA structural diversity and the PDB. The Journal of Biological Chemistry. 100553. PMID 33744292 DOI: 10.1016/j.jbc.2021.100553   
2021 Mussi V, Ledda M, Polese D, Maiolo L, Paria D, Barman I, Lolli MG, Lisi A, Convertino A. Silver-coated silicon nanowire platform discriminates genomic DNA from normal and malignant human epithelial cells using label-free Raman spectroscopy. Materials Science & Engineering. C, Materials For Biological Applications. 122: 111951. PMID 33641882 DOI: 10.1016/j.msec.2021.111951   
2021 Yu Q, Zhang J, Qiu W, Li K, Qian L, Zhang X, Liu G. Gold nanorods-based lateral flow biosensors for sensitive detection of nucleic acids. Mikrochimica Acta. 188: 133. PMID 33745096 DOI: 10.1007/s00604-021-04788-z   
2021 McCormack LS, Efremov AK, Yan J. Effects of size, cooperativity and competitive binding on protein positioning on DNA. Biophysical Journal. PMID 33771470 DOI: 10.1016/j.bpj.2021.03.016   
2021 Bhowmik D, Zhu F. Evasion of Intracellular DNA Sensing by Human Herpesviruses. Frontiers in Cellular and Infection Microbiology. 11: 647992. PMID 33791247 DOI: 10.3389/fcimb.2021.647992   
2021 Toprani SM, Bitounis D, Huang Q, Oliveira N, Ng KW, Tay CY, Nagel ZD, Demokritou P. High-Throughput Screening Platform for Nanoparticle-Mediated Alterations of DNA Repair Capacity. Acs Nano. PMID 33710878 DOI: 10.1021/acsnano.0c09254   
2021 Felipe C, Shin J, Kolomeisky AB. DNA Looping and DNA Conformational Fluctuations Can Accelerate Protein Target Search. The Journal of Physical Chemistry. B. PMID 33570939 DOI: 10.1021/acs.jpcb.0c09599   
2021 Sharma RK, Agrawal I, Dai L, Doyle P, Garaj S. DNA Knot Malleability in Single-Digit Nanopores. Nano Letters. PMID 33661654 DOI: 10.1021/acs.nanolett.0c05142   
2021 Xu X, Han D. DNA-Guided Programmable Protein Assemblies for Biomedical Applications. Chempluschem. 86: 284-290. PMID 33605561 DOI: 10.1002/cplu.202100001