Geoffrey S. Baird, Ph.D. - Related publications

2001 University of California, San Diego, La Jolla, CA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Eason MG, Pandelieva AT, Mayer MM, Khan ST, Garcia HG, Chica RA. Genetically Encoded Fluorescent Biosensor for Rapid Detection of Protein Expression. Acs Synthetic Biology. PMID 33044070 DOI: 10.1021/acssynbio.0c00407   
2020 Landegren U, Hammond M. Cancer diagnostics based on plasma protein biomarkers: hard times but great expectations. Molecular Oncology. PMID 33012111 DOI: 10.1002/1878-0261.12809   
2020 Bosch JA, Chen CL, Perrimon N. Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews. Developmental Biology. e392. PMID 32909689 DOI: 10.1002/wdev.392   
2020 Bringans S, Peters K, Casey T, Ito J, Lipscombe R. The New and the Old: Platform Cross-Validation of Immunoaffinity MASS Spectrometry versus ELISA for PromarkerD, a Predictive Test for Diabetic Kidney Disease. Proteomes. 8. PMID 33126588 DOI: 10.3390/proteomes8040031   
2020 Lamb JR, Jennings LL, Gudmundsdottir V, Gudnason V, Emilsson V. It's in Our Blood: A Glimpse of Personalized Medicine. Trends in Molecular Medicine. PMID 32988739 DOI: 10.1016/j.molmed.2020.09.003   
2020 Hegazy M, Cohen-Barak E, Koetsier JL, Najor NA, Arvanitis C, Sprecher E, Green KJ, Godsel LM. Proximity Ligation Assay for Detecting Protein-Protein Interactions and Protein Modifications in Cells and Tissues in Situ. Current Protocols in Cell Biology. 89: e115. PMID 33044803 DOI: 10.1002/cpcb.115   
2020 Michaud SA, Pětrošová H, Jackson AM, McGuire JC, Sinclair NJ, Ganguly M, Flenniken AM, Nutter LMJ, McKerlie C, Schibli D, Smith D, Borchers CH. Process and Workflow for Preparation of Disparate Mouse Tissues for Proteomic Analysis. Journal of Proteome Research. PMID 33151080 DOI: 10.1021/acs.jproteome.0c00399   
2020 Nweke EE, Naicker P, Aron S, Stoychev S, Devar J, Tabb DL, Omoshoro-Jones J, Smith M, Candy G. SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways. Plos One. 15: e0240453. PMID 33048956 DOI: 10.1371/journal.pone.0240453   
2020 Modgil S, Khosla R, Tiwari A, Sharma K, Anand A. Association of Plasma Biomarkers for Angiogenesis and Proteinopathy in Indian Amyotrophic Lateral Sclerosis Patients. Journal of Neurosciences in Rural Practice. 11: 573-580. PMID 33144793 DOI: 10.1055/s-0040-1714314   
2020 Y. Zhang, X. Chen, C. Wang, G. M. Roozbahani, H.-C. Chang, and X. Guan. Chemically functionalized conical PET nanopore for protein detection at the single-molecule level Biosensors and Bioelectronics. 165: 112289. PMID 32729470 DOI: 10.1016/j.bios.2020.112289   
2020 Pino LK, Rose J, O'Broin A, Shah S, Schilling B. Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications. Biochemical Society Transactions. PMID 33079175 DOI: 10.1042/BST20191091   
2020 Liu SY, Yuan D, Sun RJ, Zhu JJ, Shan NN. Significant reductions in apoptosis-related proteins (HSPA6, HSPA8, ITGB3, YWHAH, and PRDX6) are involved in immune thrombocytopenia. Journal of Thrombosis and Thrombolysis. PMID 33047245 DOI: 10.1007/s11239-020-02310-5   
2020 Cho KF, Branon TC, Udeshi ND, Myers SA, Carr SA, Ting AY. Proximity labeling in mammalian cells with TurboID and split-TurboID. Nature Protocols. PMID 33139955 DOI: 10.1038/s41596-020-0399-0   
2020 Masuda T, Mori A, Ito S, Ohtsuki S. Quantitative and targeted proteomics-based identification and validation of drug efficacy biomarkers. Drug Metabolism and Pharmacokinetics. PMID 33097418 DOI: 10.1016/j.dmpk.2020.09.006   
2020 Cao H, Zhu X, Chen X, Yang Y, Zhou Q, Xu W, Wang D. Quantitative proteomic analysis to identify differentially expressed proteins in the persistent atrial fibrillation using TMT coupled with nano-LC-MS/MS. American Journal of Translational Research. 12: 5032-5047. PMID 33042404   
2020 Deighan WI, Winton VJ, Melani RD, Anderson LC, McGee JP, Schachner LF, Barnidge D, Murray D, Alexander HD, Gibson DS, Deery MJ, McNicholl FP, McLaughlin J, Kelleher NL, Thomas PM. Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing. Clinical Chemistry and Laboratory Medicine. PMID 33079696 DOI: 10.1515/cclm-2020-1072   
2020 Rinschen MM, Saez-Rodriguez J. The tissue proteome in the multi-omic landscape of kidney disease. Nature Reviews. Nephrology. PMID 33028957 DOI: 10.1038/s41581-020-00348-5   
2020 Alikhani M, Amjadi F, Mirzaei M, Wu Y, Shekari F, Ashrafi M, Mehdizadeh M, McKay M, Taleahmad S, Aghajanpour S, Gupta V, Baharvand H, Aflatoonian R, Salekdeh GH. Proteome analysis of endometrial tissue from patients with PCOS reveals proteins predicted to impact the disease. Molecular Biology Reports. PMID 33098551 DOI: 10.1007/s11033-020-05924-3   
2020 Sigdel TK, Piehowski PD, Roy S, Liberto J, Hansen JR, Swensen AC, Zhao R, Zhu Y, Rashmi P, Schroeder A, Damm I, Sur S, Luo J, Yang Y, Qian WJ, ... , et al. Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in Medicine. 7: 499. PMID 33072769 DOI: 10.3389/fmed.2020.00499   
2020 Liu S, Kang Y, Zhang C, Lou Y, Li X, Lu L, Qi Z, Jian H, Zhou H. Isobaric Tagging for Relative and Absolute Protein Quantification (iTRAQ)-Based Quantitative Proteomics Analysis of Differentially Expressed Proteins 1 Week After Spinal Cord Injury in a Rat Model. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e924266. PMID 33144554 DOI: 10.12659/MSM.924266   
2020 Kumar V, Ray S, Ghantasala S, Srivastava S. An Integrated Quantitative Proteomics Workflow for Cancer Biomarker Discovery and Validation in Plasma. Frontiers in Oncology. 10: 543997. PMID 33072574 DOI: 10.3389/fonc.2020.543997   
2020 Gaynor AS, Chen W. Conditional Protein Rescue by Binding-Induced Protective Shielding. Acs Synthetic Biology. PMID 33025786 DOI: 10.1021/acssynbio.0c00367   
2020 Vinik Y, Ortega FG, Mills GB, Lu Y, Jurkowicz M, Halperin S, Aharoni M, Gutman M, Lev S. Proteomic analysis of circulating extracellular vesicles identifies potential markers of breast cancer progression, recurrence, and response. Science Advances. 6. PMID 33008904 DOI: 10.1126/sciadv.aba5714   
2020 Fisher J, Sørensen OE, Abu-Humaidan AHA. Using chemiluminescence imaging of cells (CLIC) for relative protein quantification. Scientific Reports. 10: 18280. PMID 33106566 DOI: 10.1038/s41598-020-75208-0   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Zhou J, Song Y, Xing T, Ge L, Ma L, Lu M, Zhong L. Proteomic analysis reveals distinctive protein expression patterns of thrombus in clear cell renal cell carcinoma. Translational Oncology. 14: 100895. PMID 33035959 DOI: 10.1016/j.tranon.2020.100895   
2020 Bao K, Li X, Poveda L, Qi W, Selevsek N, Gumus P, Emingil G, Grossmann J, Diaz PI, Hajishengallis G, Bostanci N, Belibasakis GN. Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease. Frontiers in Cellular and Infection Microbiology. 10: 588155. PMID 33117738 DOI: 10.3389/fcimb.2020.588155   
2020 Psaroulaki A, Mathioudaki E, Vranakis I, Chochlakis D, Yachnakis E, Kokkini S, Xie H, Tsiotis G. In the Search of Potential Serodiagnostic Proteins to Discriminate Between Acute and Chronic Q Fever in Humans. Some Promising Outcomes. Frontiers in Cellular and Infection Microbiology. 10: 557027. PMID 33072625 DOI: 10.3389/fcimb.2020.557027   
2020 Zamecnik CR, Rajan JV, Yamauchi KA, Mann SA, Loudermilk RP, Sowa GM, Zorn KC, Alvarenga BD, Gaebler C, Caskey M, Stone M, Norris PJ, Gu W, Chiu CY, Ng D, et al. ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens. Cell Reports. Medicine. 100123. PMID 32995758 DOI: 10.1016/j.xcrm.2020.100123   
2020 Kim EY, Ahn HS, Lee MY, Yu J, Yeom J, Jeong H, Min H, Lee HJ, Kim K, Ahn YM. An Exploratory Pilot Study with Plasma Protein Signatures Associated with Response of Patients with Depression to Antidepressant Treatment for 10 Weeks. Biomedicines. 8. PMID 33126421 DOI: 10.3390/biomedicines8110455   
2020 Farias APF, Rocha Filho JTR, Marchioro SB, Moreira LS, Marques AS, Sá MDCA, Oliveira AADS, Alcântara ME, Mariutti RB, Arni RK, Trindade SC, Meyer R. rSodC is a potential antigen to diagnose Corynebacterium pseudotuberculosis by enzyme-linked immunoassay. Amb Express. 10: 186. PMID 33074348 DOI: 10.1186/s13568-020-01125-0   
2020 Duval A, Sayd T, Aubry L, Ferreira CO, Ferraro V, Sante-Lhoutellier V. Development of a Statistical Workflow for Screening Protein Extracts Based on their Nutritional Composition and Digestibility: Application to Elderly. Foods (Basel, Switzerland). 9. PMID 33092127 DOI: 10.3390/foods9101499   
2020 Liu XR, Rempel DL, Gross ML. Protein higher-order-structure determination by fast photochemical oxidation of proteins and mass spectrometry analysis. Nature Protocols. PMID 33169002 DOI: 10.1038/s41596-020-0396-3   
2020 Attermann AS, Barra C, Reynisson B, Schultz HS, Leurs U, Lamberth K, Nielsen M. Improved prediction of HLA antigen presentation hotspots: Applications for immunogenicity risk assessment of therapeutic proteins. Immunology. PMID 33010039 DOI: 10.1111/imm.13274   
2020 Valdez-Sinon AN, Gokhale A, Faundez V, Bassell GJ. Protocol for Immuno-Enrichment of FLAG-Tagged Protein Complexes. Star Protocols. 1: 100083. PMID 33111116 DOI: 10.1016/j.xpro.2020.100083   
2020 Zhang X, Liu X, Li F, Yue X. The Differential Composition of Whey Proteomes in Hu Sheep Colostrum and Milk during Different Lactation Periods. Animals : An Open Access Journal From Mdpi. 10. PMID 33019658 DOI: 10.3390/ani10101784   
2020 Zhang T, Gygi SP, Paulo JA. Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching. Journal of Proteome Research. PMID 33054241 DOI: 10.1021/acs.jproteome.0c00614   
2020 Kong J, Wang Y, Qi W, Huang M, Su R, He Z. Green fluorescent protein inspired fluorophores. Advances in Colloid and Interface Science. 285: 102286. PMID 33164780 DOI: 10.1016/j.cis.2020.102286   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, et al. A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways. Methodsx. 7: 101053. PMID 33024710 DOI: 10.1016/j.mex.2020.101053   
2020 Saylor K, Waldman A, Gillam F, Zhang C. Multi-epitope insert modulates solubility-based and chromatographic purification of human papilloma virus 16 L1-based vaccine without inhibiting virus-like particle assembly. Journal of Chromatography. A. 1631: 461567. PMID 32980800 DOI: 10.1016/j.chroma.2020.461567   
2020 Chlebowski AC, Kisby GE. Protocol for High-Throughput Screening of Neural Cell or Brain Tissue Protein Using a Dot-Blot Technique with Near-Infrared Imaging. Star Protocols. 1. PMID 33043308 DOI: 10.1016/j.xpro.2020.100054   
2020 Evans DC, Corkins MR, Malone A, Miller S, Mogensen KM, Guenter P, Jensen GL, . The Use of Visceral Proteins as Nutrition Markers: An ASPEN Position Paper. Nutrition in Clinical Practice : Official Publication of the American Society For Parenteral and Enteral Nutrition. PMID 33125793 DOI: 10.1002/ncp.10588   
2020 Orwoll ES, Wiedrick J, Nielson CM, Jacobs J, Baker ES, Piehowski P, Petyuk V, Gao Y, Shi T, Smith RD, Bauer DC, Cummings SR, Lapidus J, . Proteomic assessment of serum biomarkers of longevity in older men. Aging Cell. e13253. PMID 33078901 DOI: 10.1111/acel.13253   
2020 Webster JD, Solon M, Gibson-Corley KN. Validating Immunohistochemistry Assay Specificity in Investigative Studies: Considerations for a Weight of Evidence Approach. Veterinary Pathology. 300985820960132. PMID 32975488 DOI: 10.1177/0300985820960132   
2020 Yang K, Zeng L, Ge A, Pan X, Bao T, Long Z, Tong Q, Yuan M, Zhu X, Ge J, Huang Z. Integrating systematic biological and proteomics strategies to explore the pharmacological mechanism of danshen yin modified on atherosclerosis. Journal of Cellular and Molecular Medicine. PMID 33140562 DOI: 10.1111/jcmm.15979   
2020 Winkler R. ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities. Journal of Proteomics. 230: 103985. PMID 32956841 DOI: 10.1016/j.jprot.2020.103985   
2020 McClatchy DB, Martínez-Bartolomé S, Gao Y, Lavallée-Adam M, Yates JR. Quantitative analysis of global protein stability rates in tissues. Scientific Reports. 10: 15983. PMID 32994440 DOI: 10.1038/s41598-020-72410-y   
2020 Kang TH, Seong BL. Solubility, Stability, and Avidity of Recombinant Antibody Fragments Expressed in Microorganisms. Frontiers in Microbiology. 11: 1927. PMID 33101218 DOI: 10.3389/fmicb.2020.01927   
2020 Määttä TA, Rettel M, Sridharan S, Helm D, Kurzawa N, Stein F, Savitski MM. Aggregation and disaggregation features of the human proteome. Molecular Systems Biology. 16: e9500. PMID 33022891 DOI: 10.15252/msb.20209500