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Navdeep Jaitly, Ph.D. - Publications

Affiliations: 
2014 Computer Science University of Toronto, Toronto, ON, Canada 
Area:
machine learning
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Busia A, Jaitly N. Next-Step Conditioned Deep Convolutional Neural Networks Improve Protein Secondary Structure Prediction F1000research. 6. DOI: 10.7490/F1000Research.1114813.1  0.304
2013 LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ, Metz TO, Anderson GA, Smith RD. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis. Bmc Bioinformatics. 14: 49. PMID 23398735 DOI: 10.1186/1471-2105-14-49  0.393
2012 Hinton G, Deng L, Yu D, Dahl G, Mohamed AR, Jaitly N, Senior A, Vanhoucke V, Nguyen P, Sainath T, Kingsbury B. Deep neural networks for acoustic modeling in speech recognition: The shared views of four research groups Ieee Signal Processing Magazine. 29: 82-97. DOI: 10.1109/Msp.2012.2205597  0.508
2009 Umar A, Kang H, Timmermans AM, Look MP, Meijer-van Gelder ME, den Bakker MA, Jaitly N, Martens JW, Luider TM, Foekens JA, Pasa-Tolić L. Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer. Molecular & Cellular Proteomics : McP. 8: 1278-94. PMID 19329653 DOI: 10.1074/Mcp.M800493-Mcp200  0.349
2009 Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD. Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. Bmc Bioinformatics. 10: 87. PMID 19292916 DOI: 10.1186/1471-2105-10-87  0.401
2009 Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD. Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. Plos One. 4: e4809. PMID 19277208 DOI: 10.1371/Journal.Pone.0004809  0.3
2009 Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, et al. Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample. Journal of Proteome Research. 8: 290-9. PMID 19053531 DOI: 10.1021/Pr800467R  0.35
2008 Tolmachev AV, Monroe ME, Purvine SO, Moore RJ, Jaitly N, Adkins JN, Anderson GA, Smith RD. Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments. Analytical Chemistry. 80: 8514-25. PMID 18855412 DOI: 10.1021/Ac801376G  0.413
2008 Ding J, Sorensen CM, Jaitly N, Jiang H, Orton DJ, Monroe ME, Moore RJ, Smith RD, Metz TO. Application of the accurate mass and time tag approach in studies of the human blood lipidome. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 871: 243-52. PMID 18502191 DOI: 10.1016/J.Jchromb.2008.04.040  0.34
2008 Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, Camp DG, Anderson GA, Smith RD. DAnTE: a statistical tool for quantitative analysis of -omics data. Bioinformatics (Oxford, England). 24: 1556-8. PMID 18453552 DOI: 10.1093/Bioinformatics/Btn217  0.307
2008 Ham BM, Yang F, Jayachandran H, Jaitly N, Monroe ME, Gritsenko MA, Livesay EA, Zhao R, Purvine SO, Orton D, Adkins JN, Camp DG, Rossie S, Smith RD. The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage. Journal of Proteome Research. 7: 2215-21. PMID 18412383 DOI: 10.1021/Pr700575M  0.391
2008 Mayampurath AM, Jaitly N, Purvine SO, Monroe ME, Auberry KJ, Adkins JN, Smith RD. DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra. Bioinformatics (Oxford, England). 24: 1021-3. PMID 18304935 DOI: 10.1093/Bioinformatics/Btn063  0.331
2008 Petyuk VA, Jaitly N, Moore RJ, Ding J, Metz TO, Tang K, Monroe ME, Tolmachev AV, Adkins JN, Belov ME, Dabney AR, Qian WJ, Camp DG, Smith RD. Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content. Analytical Chemistry. 80: 693-706. PMID 18163597 DOI: 10.1021/Ac701863D  0.367
2007 Yang F, Jaitly N, Jayachandran H, Luo Q, Monroe ME, Du X, Gritsenko MA, Zhang R, Anderson DJ, Purvine SO, Adkins JN, Moore RJ, Mottaz HM, Ding SJ, Lipton MS, et al. Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition. Journal of Proteome Research. 6: 4489-97. PMID 17929957 DOI: 10.1021/Pr070068E  0.328
2007 Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, Bafna V, Smith RD, Pevzner PA. Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. Genome Research. 17: 1362-77. PMID 17690205 DOI: 10.1101/Gr.6427907  0.363
2007 Liu T, Belov ME, Jaitly N, Qian WJ, Smith RD. Accurate mass measurements in proteomics. Chemical Reviews. 107: 3621-53. PMID 17649984 DOI: 10.1021/Cr068288J  0.371
2007 Ding J, Sorensen CM, Zhang Q, Jiang H, Jaitly N, Livesay EA, Shen Y, Smith RD, Metz TO. Capillary LC coupled with high-mass measurement accuracy mass spectrometry for metabolic profiling. Analytical Chemistry. 79: 6081-93. PMID 17636878 DOI: 10.1021/Ac070080Q  0.362
2007 Monroe ME, Tolić N, Jaitly N, Shaw JL, Adkins JN, Smith RD. VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinformatics (Oxford, England). 23: 2021-3. PMID 17545182 DOI: 10.1093/Bioinformatics/Btm281  0.387
2007 Sharma S, Simpson DC, Tolić N, Jaitly N, Mayampurath AM, Smith RD, Pasa-Tolić L. Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry. Journal of Proteome Research. 6: 602-10. PMID 17269717 DOI: 10.1021/Pr060354A  0.394
2007 Petyuk VA, Qian WJ, Chin MH, Wang H, Livesay EA, Monroe ME, Adkins JN, Jaitly N, Anderson DJ, Camp DG, Smith DJ, Smith RD. Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry. Genome Research. 17: 328-36. PMID 17255552 DOI: 10.1101/Gr.5799207  0.356
2006 Tolmachev AV, Monroe ME, Jaitly N, Petyuk VA, Adkins JN, Smith RD. Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration. Analytical Chemistry. 78: 8374-85. PMID 17165830 DOI: 10.1021/Ac0606251  0.376
2006 Jaitly N, Monroe ME, Petyuk VA, Clauss TR, Adkins JN, Smith RD. Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline. Analytical Chemistry. 78: 7397-409. PMID 17073405 DOI: 10.1021/Ac052197P  0.373
2006 Norbeck AD, Callister SJ, Monroe ME, Jaitly N, Elias DA, Lipton MS, Smith RD. Proteomic approaches to bacterial differentiation. Journal of Microbiological Methods. 67: 473-86. PMID 16919344 DOI: 10.1016/J.Mimet.2006.04.024  0.351
2006 Kiebel GR, Auberry KJ, Jaitly N, Clark DA, Monroe ME, Peterson ES, Toli? N, Anderson GA, Smith RD. PRISM: a data management system for high-throughput proteomics. Proteomics. 6: 1783-90. PMID 16470653 DOI: 10.1002/Pmic.200500500  0.333
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