Michael Z. Lin - Publications

Stanford University, Palo Alto, CA 
Protein engineering applied to visualizing and controlling signal transduction

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Evans SW, Shi DQ, Chavarha M, Plitt MH, Taxidis J, Madruga B, Fan JL, Hwang FJ, van Keulen SC, Suomivuori CM, Pang MM, Su S, Lee S, Hao YA, Zhang G, ... ... Lin MZ, et al. A positively tuned voltage indicator for extended electrical recordings in the brain. Nature Methods. 20: 1104-1113. PMID 37429962 DOI: 10.1038/s41592-023-01913-z  0.568
2022 Ju J, Lee HN, Ning L, Ryu H, Zhou XX, Chun H, Lee YW, Lee-Richerson AI, Jeong C, Lin MZ, Seong J. Optical regulation of endogenous RhoA reveals selection of cellular responses by signal amplitude. Cell Reports. 40: 111080. PMID 35830815 DOI: 10.1016/j.celrep.2022.111080  0.664
2022 Bajar BT, Guan X, Lam A, Lin MZ, Yasuda R, Laviv T, Chu J. FRET Imaging of Rho GTPase Activity with Red Fluorescent Protein-Based FRET Pairs. Methods in Molecular Biology (Clifton, N.J.). 2438: 31-43. PMID 35147933 DOI: 10.1007/978-1-0716-2035-9_2  0.802
2021 Seong J, Lin MZ. Optobiochemistry: Genetically Encoded Control of Protein Activity by Light. Annual Review of Biochemistry. PMID 33781076 DOI: 10.1146/annurev-biochem-072420-112431  0.679
2020 Li B, Chavarha M, Kobayashi Y, Yoshinaga S, Nakajima K, Lin MZ, Inoue T. Two-Photon Voltage Imaging of Spontaneous Activity from Multiple Neurons Reveals Network Activity in Brain Tissue. Iscience. 23: 101363. PMID 32717641 DOI: 10.1016/J.Isci.2020.101363  0.321
2020 Su Y, Walker JR, Park Y, Smith TP, Liu LX, Hall MP, Labanieh L, Hurst R, Wang DC, Encell LP, Kim N, Zhang F, Kay MA, Casey KM, Majzner RG, ... ... Lin MZ, et al. Novel NanoLuc substrates enable bright two-population bioluminescence imaging in animals. Nature Methods. PMID 32661427 DOI: 10.1038/S41592-020-0889-6  0.703
2020 Chung HK, Lin MZ. On the cutting edge: protease-based methods for sensing and controlling cell biology. Nature Methods. PMID 32661424 DOI: 10.1038/s41592-020-0891-z  0.347
2020 Wu J, Liang Y, Chen S, Hsu CL, Chavarha M, Evans SW, Shi D, Lin MZ, Tsia KK, Ji N. Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo. Nature Methods. PMID 32123392 DOI: 10.1038/S41592-020-0762-7  0.366
2019 Lin MZ. An Axonal Blueprint: Generating Neuronal Polarity with Light-Inducible Proteins. Cell Chemical Biology. 26: 1634-1636. PMID 31951578 DOI: 10.1016/j.chembiol.2019.12.003  0.368
2019 Villette V, Chavarha M, Dimov IK, Bradley J, Pradhan L, Mathieu B, Evans SW, Chamberland S, Shi D, Yang R, Kim BB, Ayon A, Jalil A, St-Pierre F, Schnitzer MJ, ... ... Lin MZ, et al. Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice. Cell. 179: 1590-1608.e23. PMID 31835034 DOI: 10.1016/J.Cell.2019.11.004  0.353
2019 Yang Y, Geng Y, Jiang D, Ning L, Kim HJ, Jeon NL, Lau A, Chen L, Lin MZ. Kinase pathway inhibition restores PSD95 induction in neurons lacking fragile X mental retardation protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 31118285 DOI: 10.1073/Pnas.1812056116  0.619
2019 Oh Y, Park Y, Cho JH, Wu H, Paulk NK, Liu LX, Kim N, Kay MA, Wu JC, Lin MZ. An orange calcium-modulated bioluminescent indicator for non-invasive activity imaging. Nature Chemical Biology. PMID 30936501 DOI: 10.1038/S41589-019-0256-Z  0.692
2019 Walker JR, Park Y, Lin M, Kirkland TA, Hall MP, Encell LP, Oh Y, Liu L. Abstract 1957: Novel substrates for NanoLuc luciferase with improved brightness and signal duration for bioluminescence imaging in vivo Cancer Research. 79: 1957-1957. DOI: 10.1158/1538-7445.Sabcs18-1957  0.348
2018 Jacobs CL, Badiee RK, Lin MZ. StaPLs: versatile genetically encoded modules for engineering drug-inducible proteins. Nature Methods. 15: 523-526. PMID 29967496 DOI: 10.1038/s41592-018-0041-z  0.328
2018 Xu F, Shi DQ, Lau PM, Lin MZ, Bi GQ. Excitation wavelength optimization improves photostability of ASAP-family GEVIs. Molecular Brain. 11: 32. PMID 29866136 DOI: 10.1186/s13041-018-0374-7  0.395
2018 Mathieu B, Villette V, Akemann W, Evans SW, Chavarha M, Bradley J, Shi D, Bourdieu L, Lin M, Dieudonné S. Multiphoton Ultrafast LOcal Volume Excitation (ULOVE) Through Acousto-optic Wavefront Shaping to Record and Control Neuronal Activity Brain. DOI: 10.1364/Brain.2018.Bth4C.2  0.344
2017 Zhou XX, Zou X, Chung HK, Gao Y, Liu Y, Qi LS, Lin MZ. A single-chain photoswitchable CRISPR-Cas9 architecture for light-inducible gene editing and transcription. Acs Chemical Biology. PMID 28938067 DOI: 10.1021/Acschembio.7B00603  0.355
2017 Duan L, Hope J, Ong Q, Lou HY, Kim N, McCarthy C, Acero V, Lin MZ, Cui B. Understanding CRY2 interactions for optical control of intracellular signaling. Nature Communications. 8: 547. PMID 28916751 DOI: 10.1038/S41467-017-00648-8  0.688
2017 Chamberland S, Yang HH, Pan MM, Evans SW, Guan S, Chavarha M, Yang Y, Salesse C, Wu H, Wu JC, Clandinin TR, Toth K, Lin MZ, St-Pierre F. Fast two-photon imaging of subcellular voltage dynamics in neuronal tissue with genetically encoded indicators. Elife. 6. PMID 28749338 DOI: 10.7554/Elife.25690  0.605
2017 Zhou XX, Fan LZ, Li P, Shen K, Lin MZ. Optical control of cell signaling by single-chain photoswitchable kinases. Science (New York, N.Y.). 355: 836-842. PMID 28232577 DOI: 10.1126/Science.Aah3605  0.603
2016 Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY. The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins. Trends in Biochemical Sciences. PMID 27814948 DOI: 10.1016/J.Tibs.2016.09.010  0.771
2016 Bajar BT, Lam AJ, Badiee RK, Oh YH, Chu J, Zhou XX, Kim N, Kim BB, Chung M, Yablonovitch AL, Cruz BF, Kulalert K, Tao JJ, Meyer T, Su XD, ... Lin MZ, et al. Fluorescent indicators for simultaneous reporting of all four cell cycle phases. Nature Methods. PMID 27798610 DOI: 10.1038/Nmeth.4045  0.705
2016 Laviv T, Kim BB, Chu J, Lam AJ, Lin MZ, Yasuda R. Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins. Nature Methods. PMID 27798609 DOI: 10.1038/Nmeth.4046  0.794
2016 Bajar BT, Wang ES, Zhang S, Lin MZ, Chu J. A Guide to Fluorescent Protein FRET Pairs. Sensors (Basel, Switzerland). 16. PMID 27649177 DOI: 10.3390/s16091488  0.408
2016 Lin MZ, Schnitzer MJ. Genetically encoded indicators of neuronal activity. Nature Neuroscience. 19: 1142-1153. PMID 27571193 DOI: 10.1038/nn.4359  0.353
2016 Ng HL, Lin MZ. Structure-guided wavelength tuning in far-red fluorescent proteins. Current Opinion in Structural Biology. 39: 124-133. PMID 27468111 DOI: 10.1016/j.sbi.2016.07.010  0.424
2016 Yang HH, St-Pierre F, Sun X, Ding X, Lin MZ, Clandinin TR. Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo. Cell. PMID 27264607 DOI: 10.1016/J.Cell.2016.05.031  0.765
2016 Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin JJ, Laviv T, Welf ES, Dean KM, Zhang F, Kim BB, Tang CT, Hu M, Baird MA, Davidson MW, ... ... Lin MZ, et al. A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo. Nature Biotechnology. PMID 27240196 DOI: 10.1038/Nbt.3550  0.791
2016 Welf ES, Driscoll MK, Dean KM, Schäfer C, Chu J, Davidson MW, Lin MZ, Danuser G, Fiolka R. Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments. Developmental Cell. 36: 462-75. PMID 26906741 DOI: 10.1016/J.Devcel.2016.01.022  0.319
2016 Bajar BT, Wang ES, Lam AJ, Kim BB, Jacobs CL, Howe ES, Davidson MW, Lin MZ, Chu J. Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting. Scientific Reports. 6: 20889. PMID 26879144 DOI: 10.1038/srep20889  0.427
2016 Rodriguez EA, Shaner NC, Lin MZ, Campbell RE. The Author File: Roger Y Tsien (1952-2016) Nature Methods. 13: 893-893. DOI: 10.1038/Nmeth.4044  0.725
2015 Zhou XX, Pan M, Lin MZ. Investigating neuronal function with optically controllable proteins. Frontiers in Molecular Neuroscience. 8: 37. PMID 26257603 DOI: 10.3389/fnmol.2015.00037  0.398
2015 Chung HK, Jacobs CL, Huo Y, Yang J, Krumm SA, Plemper RK, Tsien RY, Lin MZ. Tunable and reversible drug control of protein production via a self-excising degron. Nature Chemical Biology. 11: 713-20. PMID 26214256 DOI: 10.1038/nchembio.1869  0.543
2015 St-Pierre F, Chavarha M, Lin MZ. Designs and sensing mechanisms of genetically encoded fluorescent voltage indicators. Current Opinion in Chemical Biology. 27: 31-8. PMID 26079047 DOI: 10.1016/j.cbpa.2015.05.003  0.32
2015 Fan LZ, Lin MZ. Optical control of biological processes by light-switchable proteins. Wiley Interdisciplinary Reviews. Developmental Biology. PMID 25858669 DOI: 10.1002/Wdev.188  0.621
2015 Zhou XX, Lin MZ. Experimental systems for optogenetic control of protein activity with photodissociable fluorescent proteins Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9305. DOI: 10.1117/12.2081242  0.415
2014 St-Pierre F, Marshall JD, Yang Y, Gong Y, Schnitzer MJ, Lin MZ. High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor. Nature Neuroscience. 17: 884-9. PMID 24755780 DOI: 10.1038/Nn.3709  0.348
2014 Chu J, Haynes RD, Corbel SY, Li P, González-González E, Burg JS, Ataie NJ, Lam AJ, Cranfill PJ, Baird MA, Davidson MW, Ng HL, Garcia KC, Contag CH, Shen K, ... ... Lin MZ, et al. Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein. Nature Methods. 11: 572-8. PMID 24633408 DOI: 10.1038/Nmeth.2888  0.404
2014 Fan L, Zhou XX, Chavarha M, Lin MZ. Improving Optical Control of Protein Activity by Light-Induced Fluorescent Protein Dissociation Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2162  0.647
2013 Seong J, Tajik A, Sun J, Guan JL, Humphries MJ, Craig SE, Shekaran A, García AJ, Lu S, Lin MZ, Wang N, Wang Y. Distinct biophysical mechanisms of focal adhesion kinase mechanoactivation by different extracellular matrix proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 19372-7. PMID 24222685 DOI: 10.1073/Pnas.1307405110  0.748
2013 Ntziachristos V, Achilefu S, Wang YP, Lin M. Special section on fluorescence molecular imaging honoring Prof. Roger Tsien, a pioneer in biomedical optics. Journal of Biomedical Optics. 18: 101301. PMID 24169645 DOI: 10.1117/1.Jbo.18.10.101301  0.549
2013 Kim B, Lin MZ. Optobiology: optical control of biological processes via protein engineering. Biochemical Society Transactions. 41: 1183-8. PMID 24059506 DOI: 10.1042/BST20130150  0.375
2013 Zhou XX, Lin MZ. Photoswitchable fluorescent proteins: ten years of colorful chemistry and exciting applications. Current Opinion in Chemical Biology. 17: 682-90. PMID 23876529 DOI: 10.1016/j.cbpa.2013.05.031  0.456
2012 Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE. New alternately colored FRET sensors for simultaneous monitoring of Zn²⁺ in multiple cellular locations. Plos One. 7: e49371. PMID 23173058 DOI: 10.1371/Journal.Pone.0049371  0.564
2012 Zhou XX, Chung HK, Lam AJ, Lin MZ. Optical control of protein activity by fluorescent protein domains. Science (New York, N.Y.). 338: 810-4. PMID 23139335 DOI: 10.1126/science.1226854  0.385
2012 Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nature Neuroscience. 15: 1742-51. PMID 23103964 DOI: 10.1038/Nn.3246  0.786
2012 Lam AJ, St-Pierre F, Gong Y, Marshall JD, Cranfill PJ, Baird MA, McKeown MR, Wiedenmann J, Davidson MW, Schnitzer MJ, Tsien RY, Lin MZ. Improving FRET dynamic range with bright green and red fluorescent proteins. Nature Methods. 9: 1005-12. PMID 22961245 DOI: 10.1016/J.Bpj.2012.11.3773  0.612
2011 Lin MZ. Beyond the rainbow: new fluorescent proteins brighten the infrared scene. Nature Methods. 8: 726-8. PMID 21878918 DOI: 10.1038/nmeth.1678  0.44
2010 Knöpfel T, Lin MZ, Levskaya A, Tian L, Lin JY, Boyden ES. Toward the second generation of optogenetic tools. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14998-5004. PMID 21068304 DOI: 10.1523/Jneurosci.4190-10.2010  0.55
2010 De Jaco A, Lin MZ, Dubi N, Comoletti D, Miller MT, Camp S, Ellisman M, Butko MT, Tsien RY, Taylor P. Neuroligin trafficking deficiencies arising from mutations in the alpha/beta-hydrolase fold protein family. The Journal of Biological Chemistry. 285: 28674-82. PMID 20615874 DOI: 10.1074/Jbc.M110.139519  0.763
2010 Lin MZ, Tsien RY. TimeSTAMP tagging of newly synthesized proteins. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 26.5. PMID 20155731 DOI: 10.1002/0471140864.ps2605s59  0.566
2010 Groth RD, Yang NJ, Lin MZ, Tsien RY, Tsien RW. Activity-dependent synthesis of αCaMKII in hippocampal neurons studied with Time-STAMP F1000research. 1. DOI: 10.7490/F1000Research.58.1  0.489
2010 Lin MZ, McKeown MR, Leung Ng H, Alber T, Tsien R. Functional and Structural Characterization of A New Monomeric Far-Red Fluorescent Protein Biophysical Journal. 98: 215a. DOI: 10.1016/J.Bpj.2009.12.1158  0.602
2009 Lin MZ, McKeown MR, Ng HL, Aguilera TA, Shaner NC, Campbell RE, Adams SR, Gross LA, Ma W, Alber T, Tsien RY. Autofluorescent proteins with excitation in the optical window for intravital imaging in mammals. Chemistry & Biology. 16: 1169-79. PMID 19942140 DOI: 10.1016/J.Chembiol.2009.10.009  0.797
2009 Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY. Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science (New York, N.Y.). 324: 804-7. PMID 19423828 DOI: 10.1126/Science.1168683  0.785
2009 Lin JY, Lin MZ, Steinbach P, Tsien RY. Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophysical Journal. 96: 1803-14. PMID 19254539 DOI: 10.1016/J.Bpj.2008.11.034  0.604
2009 Shaner NC, Lin MZ, Mckeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY. Evaluating and improving the photostability of fluorescent proteins Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7191. DOI: 10.1117/12.814684  0.736
2008 Lin MZ, Wang L. Selective labeling of proteins with chemical probes in living cells. Physiology (Bethesda, Md.). 23: 131-41. PMID 18556466 DOI: 10.1152/Physiol.00007.2008  0.421
2008 Lin MZ, Glenn JS, Tsien RY. A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals. Proceedings of the National Academy of Sciences of the United States of America. 105: 7744-9. PMID 18511556 DOI: 10.1073/Pnas.0803060105  0.572
2008 Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY. Improving the photostability of bright monomeric orange and red fluorescent proteins. Nature Methods. 5: 545-51. PMID 18454154 DOI: 10.1038/Nmeth.1209  0.76
2005 Ngo-Anh TJ, Bloodgood BL, Lin M, Sabatini BL, Maylie J, Adelman JP. SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines. Nature Neuroscience. 8: 642-9. PMID 15852011 DOI: 10.1038/Nn1449  0.694
2005 Cowan CW, Shao YR, Sahin M, Shamah SM, Lin MZ, Greer PL, Gao S, Griffith EC, Brugge JS, Greenberg ME. Vav family GEFs link activated Ephs to endocytosis and axon guidance. Neuron. 46: 205-17. PMID 15848800 DOI: 10.1016/J.Neuron.2005.03.019  0.753
2005 Sahin M, Greer PL, Lin MZ, Poucher H, Eberhart J, Schmidt S, Wright TM, Shamah SM, O'connell S, Cowan CW, Hu L, Goldberg JL, Debant A, Corfas G, Krull CE, et al. Eph-dependent tyrosine phosphorylation of ephexin1 modulates growth cone collapse. Neuron. 46: 191-204. PMID 15848799 DOI: 10.1016/J.Neuron.2005.01.030  0.764
2004 Lin MZ, Sahin M, Gree P, Shamah SM, Greenberg ME. 426 CONTROL OF AXON GUIDANCE DURING BRAIN DEVELOPMENT BY EPHEXIN, A NOVEL REGULATOR OF THE ACTIN CYTOSKELETON. Journal of Investigative Medicine. 52: S154.1-S154. DOI: 10.1136/jim-52-suppl1-426  0.464
2002 Datta SR, Ranger AM, Lin MZ, Sturgill JF, Ma YC, Cowan CW, Dikkes P, Korsmeyer SJ, Greenberg ME. Survival factor-mediated BAD phosphorylation raises the mitochondrial threshold for apoptosis. Developmental Cell. 3: 631-43. PMID 12431371 DOI: 10.1016/S1534-5807(02)00326-X  0.765
2001 Watson FL, Heerssen HM, Bhattacharyya A, Klesse L, Lin MZ, Segal RA. Neurotrophins use the Erk5 pathway to mediate a retrograde survival response. Nature Neuroscience. 4: 981-8. PMID 11544482 DOI: 10.1038/Nn720  0.352
2001 Shamah SM, Lin MZ, Goldberg JL, Estrach S, Sahin M, Hu L, Bazalakova M, Neve RL, Corfas G, Debant A, Greenberg ME. EphA receptors regulate growth cone dynamics through the novel guanine nucleotide exchange factor ephexin. Cell. 105: 233-44. PMID 11336673 DOI: 10.1016/S0092-8674(01)00314-2  0.603
2001 Sun Y, Nadal-Vicens M, Misono S, Lin MZ, Zubiaga A, Hua X, Fan G, Greenberg ME. Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms. Cell. 104: 365-76. PMID 11239394 DOI: 10.1016/S0092-8674(01)00224-0  0.75
2000 Dalva MB, Takasu MA, Lin MZ, Shamah SM, Hu L, Gale NW, Greenberg ME. EphB receptors interact with NMDA receptors and regulate excitatory synapse formation. Cell. 103: 945-56. PMID 11136979 DOI: 10.1016/S0092-8674(00)00197-5  0.741
2000 Lin MZ, Greenberg ME. Orchestral maneuvers in the axon: trio and the control of axon guidance. Cell. 101: 239-42. PMID 10847678 DOI: 10.1016/S0092-8674(00)80833-8  0.491
1999 Watson FL, Heerssen HM, Moheban DB, Lin MZ, Sauvageot CM, Bhattacharyya A, Pomeroy SL, Segal RA. Rapid nuclear responses to target-derived neurotrophins require retrograde transport of ligand-receptor complex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 7889-900. PMID 10479691 DOI: 10.1523/Jneurosci.19-18-07889.1999  0.356
1999 Dong X, Tsuda L, Zavitz KH, Lin M, Li S, Carthew RW, Zipursky SL. ebi regulates epidermal growth factor receptor signaling pathways in Drosophila. Genes & Development. 13: 954-65. PMID 10215623 DOI: 10.1101/Gad.13.8.954  0.361
1999 Brunet A, Bonni A, Zigmond MJ, Lin MZ, Juo P, Hu LS, Anderson MJ, Arden KC, Blenis J, Greenberg ME. Akt promotes cell survival by phosphorylating and inhibiting a Forkhead transcription factor. Cell. 96: 857-68. PMID 10102273 DOI: 10.1016/S0092-8674(00)80595-4  0.714
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