Daniel Vera, Ph.D. - Publications

2014 Biological Science Florida State University, Tallahassee, FL, United States 
Genome regulation

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Cole L, Kurscheid S, Nekrasov M, Domaschenz R, Vera DL, Dennis JH, Tremethick DJ. Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells. Nature Communications. 12: 2524. PMID 33953180 DOI: 10.1038/s41467-021-22688-x  0.6
2018 Turpin ZM, Vera DL, Savadel SD, Lung PY, Wear EE, Mickelson-Young L, Thompson WF, Hanley-Bowdoin L, Dennis JH, Zhang J, Bass HW. Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize ( L). Data in Brief. 20: 358-363. PMID 30175199 DOI: 10.1016/J.Dib.2018.08.015  0.6
2018 Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J. iSeg: an efficient algorithm for segmentation of genomic and epigenomic data. Bmc Bioinformatics. 19: 131. PMID 29642840 DOI: 10.1186/S12859-018-2140-3  0.6
2016 Sotolongo-Lopez M, Alvarez-Delfin K, Saade CJ, Vera DL, Fadool JM. Genetic Dissection of Dual Roles for the Transcription Factor six7 in Photoreceptor Development and Patterning in Zebrafish. Plos Genetics. 12: e1005968. PMID 27058886 DOI: 10.1371/Journal.Pgen.1005968  0.6
2016 Lo PK, Huang YC, Poulton JS, Leake N, Palmer WH, Vera D, Xie G, Klusza S, Deng WM. RNA helicase Belle/DDX3 regulates transgene expression in Drosophila. Developmental Biology. PMID 26900887 DOI: 10.1016/J.Ydbio.2016.02.014  0.6
2016 Sexton BS, Druliner BR, Vera DL, Avey D, Zhu F, Dennis JH. Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response. Oncotarget. PMID 26771136 DOI: 10.18632/Oncotarget.6841  0.6
2015 Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH. Comprehensive nucleosome mapping of the human genome in cancer progression. Oncotarget. PMID 26735342 DOI: 10.18632/Oncotarget.6811  0.6
2015 Ren Y, Vera DL, Hughes KA, Dennis JH. Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy. Genomics Data. 3: 146-7. PMID 26484165 DOI: 10.1016/J.Gdata.2015.01.001  0.6
2015 Dileep V, Ay F, Sima J, Vera DL, Noble WS, Gilbert DM. Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program. Genome Research. PMID 25995270 DOI: 10.1101/Gr.183699.114  0.6
2015 Ren Y, Vera DL, Hughes KA, Dennis JH. Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy Genomics Data. 3: 146-147. DOI: 10.1016/j.gdata.2015.01.001  0.6
2014 Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, et al. Topologically associating domains are stable units of replication-timing regulation. Nature. 515: 402-5. PMID 25409831 DOI: 10.1038/Nature13986  0.6
2014 Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize. The Plant Cell. 26: 3883-93. PMID 25361955 DOI: 10.1105/Tpc.114.130609  0.6
2014 Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH. The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed. Genome Research. 24: 251-9. PMID 24310001 DOI: 10.1101/Gr.160150.113  0.6
2013 Druliner BR, Fincher JA, Sexton BS, Vera DL, Roche M, Lyle S, Dennis JH. Chromatin patterns associated with lung adenocarcinoma progression Cell Cycle. 12: 1536-1543. PMID 23598721 DOI: 10.4161/Cc.24664  0.6
2013 Fincher JA, Vera DL, Hughes DD, McGinnis KM, Dennis JH, Bass HW. Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales Plant Physiology. 162: 1127-1141. PMID 23572549 DOI: 10.1104/Pp.113.216432  0.6
2011 Brown AN, Lauter N, Vera DL, McLaughlin-Large KA, Steele TM, Fredette NC, Bass HW. QTL Mapping and Candidate Gene Analysis of Telomere Length Control Factors in Maize (Zea mays L.). G3 (Bethesda, Md.). 1: 437-50. PMID 22384354 DOI: 10.1534/G3.111.000703  0.6
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