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Jonathan C. Trinidad, Ph.D. - Publications

Affiliations: 
2003 Harvard University, Cambridge, MA, United States 
Area:
nicotinic acetylcholine receptors (AChR) and GABAa receptors
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 McCambridge A, Solanki D, Olchawa N, Govani N, Trinidad JC, Gao M. Comparative Proteomics Reveal Me31B's Interactome Dynamics, Expression Regulation, and Assembly Mechanism into Germ Granules during Drosophila Germline Development. Scientific Reports. 10: 564. PMID 31953495 DOI: 10.1038/S41598-020-57492-Y  0.339
2019 Redditt TJ, Chung EH, Zand Karimi H, Rodibaugh N, Zhang Y, Trinidad JC, Kim JH, Zhou Q, Shen M, Dangl JL, Mackey DM, Innes RW. AvrRpm1 Functions as an ADP-Ribosyl Transferase to Modify NOI-domain Containing Proteins, Including Arabidopsis and Soybean RPM1-interacting Protein 4. The Plant Cell. PMID 31548257 DOI: 10.1105/Tpc.19.00020  0.374
2018 Brown CJ, Kaufman T, Trinidad JC, Clemmer DE. Proteome changes in the aging head. International Journal of Mass Spectrometry. 425: 36-46. PMID 30906200 DOI: 10.1016/J.Ijms.2018.01.003  0.35
2018 Peng H, Zhang Y, Trinidad JC, Giedroc DP. Thioredoxin Profiling of Multiple Thioredoxin-Like Proteins in . Frontiers in Microbiology. 9: 2385. PMID 30374335 DOI: 10.3389/Fmicb.2018.02385  0.38
2018 Mohari B, Thompson MA, Trinidad JC, Setayeshgar S, Fuqua C. Multiple Flagellin Proteins Have Distinct and Synergistic Roles in Motility. Journal of Bacteriology. PMID 30201783 DOI: 10.1128/Jb.00327-18  0.315
2018 Shen J, Walsh BJC, Flores-Mireles AL, Peng H, Zhang Y, Zhang Y, Trinidad JC, Hultgren SJ, Giedroc DP. Hydrogen sulfide sensing through reactive sulfur species (RSS) and nitroxyl (HNO) in Enterococcus faecalis. Acs Chemical Biology. PMID 29712426 DOI: 10.1021/Acschembio.8B00230  0.319
2018 Chen G, Zhang Y, Trinidad JC, Dann C. Distinguishing Sulfotyrosine Containing Peptides from their Phosphotyrosine Counterparts Using Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 29313205 DOI: 10.1007/S13361-017-1854-1  0.321
2017 DeHaan H, McCambridge A, Armstrong B, Cruse C, Solanki D, Trinidad JC, Arkov AL, Gao M. An in vivo Proteomic Analysis of the Me31B Interactome in Drosophila Germ Granules. Febs Letters. PMID 28945271 DOI: 10.1002/1873-3468.12854  0.349
2017 Peng H, Zhang Y, Palmer LD, Kehl-Fie TE, Skaar EP, Trinidad JC, Giedroc DP. Hydrogen sulfide (H2S) and reactive sulfur species (RSS) impact proteome S-sulfhydration and global virulence regulation in Staphylococcus aureus. Acs Infectious Diseases. PMID 28850209 DOI: 10.1021/Acsinfecdis.7B00090  0.321
2016 Ramsey J, Renzi EC, Arnold RJ, Trinidad JC, Mukhopadhyay S. Palmitoylation of Sindbis virus TF protein regulates its plasma membrane localization and subsequent incorporation into virions. Journal of Virology. PMID 27852864 DOI: 10.1128/Jvi.02000-16  0.305
2016 Zhu F, Clemmer DE, Trinidad JC. Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategies. The Analyst. PMID 27845783 DOI: 10.1039/C6An02043G  0.3
2016 Cheng H, Burroughs-Garcia J, Birkness JE, Trinidad JC, Deans MR. Disparate Regulatory Mechanisms Control Fat3 and P75NTR Protein Transport through a Conserved Kif5-Interaction Domain. Plos One. 11: e0165519. PMID 27788242 DOI: 10.1371/Journal.Pone.0165519  0.324
2015 Zhu F, Trinidad JC, Clemmer DE. Glycopeptide Site Heterogeneity and Structural Diversity Determined by Combined Lectin Affinity Chromatography/IMS/CID/MS Techniques. Journal of the American Society For Mass Spectrometry. 26: 1092-102. PMID 25840811 DOI: 10.1007/S13361-015-1110-5  0.302
2013 Trinidad JC, Schoepfer R, Burlingame AL, Medzihradszky KF. N- and O-glycosylation in the murine synaptosome. Molecular & Cellular Proteomics : McP. 12: 3474-88. PMID 23816992 DOI: 10.1074/Mcp.M113.030007  0.319
2013 Gautam V, Trinidad JC, Rimerman RA, Costa BM, Burlingame AL, Monaghan DT. Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D. Neuropharmacology. 74: 96-107. PMID 23639431 DOI: 10.1016/J.Neuropharm.2013.04.035  0.315
2013 Trinidad JC, Thalhammer A, Burlingame AL, Schoepfer R. Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins. Molecular & Cellular Proteomics : McP. 12: 29-41. PMID 23035237 DOI: 10.1074/Mcp.M112.019976  0.329
2012 Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL. Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Molecular & Cellular Proteomics : McP. 11: 215-29. PMID 22645316 DOI: 10.1074/Mcp.O112.018366  0.306
2012 Agard NJ, Mahrus S, Trinidad JC, Lynn A, Burlingame AL, Wells JA. Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1913-8. PMID 22308409 DOI: 10.1073/Pnas.1117158109  0.319
2012 Medzihradszky KF, Trinidad JC. Unusual fragmentation of Pro-Ser/Thr-containing peptides detected in collision-induced dissociation spectra. Journal of the American Society For Mass Spectrometry. 23: 602-7. PMID 21952759 DOI: 10.1007/S13361-011-0216-7  0.304
2011 Lau EK, Trester-Zedlitz M, Trinidad JC, Kotowski SJ, Krutchinsky AN, Burlingame AL, von Zastrow M. Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection. Science Signaling. 4: ra52. PMID 21868358 DOI: 10.1126/Scisignal.2001748  0.306
2010 David DC, Ollikainen N, Trinidad JC, Cary MP, Burlingame AL, Kenyon C. Widespread protein aggregation as an inherent part of aging in C. elegans. Plos Biology. 8: e1000450. PMID 20711477 DOI: 10.1371/Journal.Pbio.1000450  0.302
2009 Beltrao P, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, Krogan NJ. Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Plos Biology. 7: e1000134. PMID 19547744 DOI: 10.1371/Journal.Pbio.1000134  0.332
2009 Thalhammer A, Trinidad JC, Burlingame AL, Schoepfer R. Densin-180: revised membrane topology, domain structure and phosphorylation status. Journal of Neurochemistry. 109: 297-302. PMID 19187442 DOI: 10.1111/J.1471-4159.2009.05951.X  0.33
2008 Mahrus S, Trinidad JC, Barkan DT, Sali A, Burlingame AL, Wells JA. Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell. 134: 866-76. PMID 18722006 DOI: 10.1016/J.Cell.2008.08.012  0.329
2008 Trinidad JC, Thalhammer A, Specht CG, Lynn AJ, Baker PR, Schoepfer R, Burlingame AL. Quantitative analysis of synaptic phosphorylation and protein expression. Molecular & Cellular Proteomics : McP. 7: 684-96. PMID 18056256 DOI: 10.1074/Mcp.M700170-Mcp200  0.39
2006 Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL. O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 923-34. PMID 16452088 DOI: 10.1074/Mcp.T500040-Mcp200  0.332
2006 Trinidad JC, Specht CG, Thalhammer A, Schoepfer R, Burlingame AL. Comprehensive identification of phosphorylation sites in postsynaptic density preparations. Molecular & Cellular Proteomics : McP. 5: 914-22. PMID 16452087 DOI: 10.1074/Mcp.T500041-Mcp200  0.391
2005 Olsen O, Moore KA, Fukata M, Kazuta T, Trinidad JC, Kauer FW, Streuli M, Misawa H, Burlingame AL, Nicoll RA, Bredt DS. Neurotransmitter release regulated by a MALS-liprin-alpha presynaptic complex. The Journal of Cell Biology. 170: 1127-34. PMID 16186258 DOI: 10.1083/Jcb.200503011  0.31
2005 Fukata Y, Tzingounis AV, Trinidad JC, Fukata M, Burlingame AL, Nicoll RA, Bredt DS. Molecular constituents of neuronal AMPA receptors. The Journal of Cell Biology. 169: 399-404. PMID 15883194 DOI: 10.1083/Jcb.200501121  0.338
2005 Trinidad JC, Thalhammer A, Specht CG, Schoepfer R, Burlingame AL. Phosphorylation state of postsynaptic density proteins. Journal of Neurochemistry. 92: 1306-16. PMID 15748150 DOI: 10.1111/J.1471-4159.2004.02943.X  0.389
2005 Vosseller K, Hansen KC, Chalkley RJ, Trinidad JC, Wells L, Hart GW, Burlingame AL. Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol. Proteomics. 5: 388-98. PMID 15648052 DOI: 10.1002/Pmic.200401066  0.338
2004 Trinidad JC, Cohen JB. Neuregulin inhibits acetylcholine receptor aggregation in myotubes. The Journal of Biological Chemistry. 279: 31622-8. PMID 15155732 DOI: 10.1074/Jbc.M400044200  0.413
2003 Chiara DC, Trinidad JC, Wang D, Ziebell MR, Sullivan D, Cohen JB. Identification of amino acids in the nicotinic acetylcholine receptor agonist binding site and ion channel photolabeled by 4-[(3-trifluoromethyl)-3H-diazirin-3-yl]benzoylcholine, a novel photoaffinity antagonist. Biochemistry. 42: 271-83. PMID 12525154 DOI: 10.1021/Bi0269815  0.437
2000 Trinidad JC, Fischbach GD, Cohen JB. The Agrin/MuSK signaling pathway is spatially segregated from the neuregulin/ErbB receptor signaling pathway at the neuromuscular junction. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 8762-70. PMID 11102484 DOI: 10.1523/Jneurosci.20-23-08762.2000  0.434
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