☰

Haris Vikalo, Ph.D. - Publications

Affiliations: 
2007- Electrical and Computer Engineering University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
signal processing
Website:
http://users.ece.utexas.edu/~hvikalo/
Tree Info Similar researchers PubMed Report error

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sankararaman A, Vikalo H, Baccelli F. ComHapDet: a spatial community detection algorithm for haplotype assembly. Bmc Genomics. 21: 586. PMID 32900369 DOI: 10.1186/S12864-020-06935-X  0.341
2019 Barik S, Vikalo H. Matrix Completion and Performance Guarantees for Single Individual Haplotyping Ieee Transactions On Signal Processing. 67: 4782-4794. DOI: 10.1109/Tsp.2019.2931207  0.363
2018 Hassibi A, Manickam A, Singh R, Bolouki S, Sinha R, Jirage KB, McDermott MW, Hassibi B, Vikalo H, Mazarei G, Pei L, Bousse L, Miller M, Heshami M, Savage MP, et al. Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip. Nature Biotechnology. PMID 30010676 DOI: 10.1038/Nbt.4179  0.569
2018 Hashemi A, Vikalo H. Evolutionary Self-Expressive Models for Subspace Clustering Ieee Journal of Selected Topics in Signal Processing. 12: 1534-1546. DOI: 10.1109/Jstsp.2018.2877478  0.309
2018 Yang H, Chun J, Vikalo H. Cyclic block coordinate minimization algorithms for DOA estimation in co-prime arrays Signal Processing. 145: 272-284. DOI: 10.1016/J.Sigpro.2017.12.005  0.395
2018 Hashemi A, Vikalo H. Accelerated orthogonal least-squares for large-scale sparse reconstruction Digital Signal Processing. 82: 91-105. DOI: 10.1016/J.Dsp.2018.07.010  0.382
2017 Das S, Vikalo H. Optimal Haplotype Assembly via a Branch-and-Bound Algorithm Ieee Transactions On Molecular, Biological and Multi-Scale Communications. 3: 1-12. DOI: 10.1109/Tmbmc.2016.2640306  0.384
2017 Si H, Vikalo H, Vishwanath S. Information-Theoretic Analysis of Haplotype Assembly Ieee Transactions On Information Theory. 63: 3468-3479. DOI: 10.1109/Tit.2017.2686884  0.393
2016 O'Reilly E, Baccelli F, De Veciana G, Vikalo H. End-to-End Optimization of High-Throughput DNA Sequencing. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27387090 DOI: 10.1089/Cmb.2015.0185  0.359
2016 Puljiz Z, Vikalo H. Decoding Genetic Variations: Communications-Inspired Haplotype Assembly. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 518-30. PMID 27295635 DOI: 10.1109/Tcbb.2015.2462367  0.386
2016 Cai C, Sanghavi S, Vikalo H. Structured Low-Rank Matrix Factorization for Haplotype Assembly Ieee Journal On Selected Topics in Signal Processing. 10: 647-657. DOI: 10.1109/Jstsp.2016.2547860  0.316
2015 Arzeno NM, Vikalo H. Semi-Supervised Affinity Propagation with Soft Instance-Level Constraints. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 1041-52. PMID 26353327 DOI: 10.1109/Tpami.2014.2359454  0.337
2015 Ahn S, Vikalo H. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm. Bmc Bioinformatics. 16: 223. PMID 26178880 DOI: 10.1186/S12859-015-0651-8  0.308
2014 Shen X, Shamaiah M, Vikalo H. Iterative Learning for Reference-Guided DNA Sequence Assembly from Short Reads: Algorithms and Limits of Performance Ieee Transactions On Signal Processing. 62: 4425-4435. DOI: 10.1109/Tsp.2014.2333564  0.397
2014 Barik S, Vikalo H. Sparsity-aware sphere decoding: Algorithms and complexity analysis Ieee Transactions On Signal Processing. 62: 2212-2225. DOI: 10.1109/Tsp.2014.2307836  0.445
2013 Das S, Vikalo H. Base calling for high-throughput short-read sequencing: dynamic programming solutions. Bmc Bioinformatics. 14: 129. PMID 23586484 DOI: 10.1186/1471-2105-14-129  0.362
2013 Lee SH, Shamaiah M, Vikalo H, Vishwanath S. Message-passing algorithms for coordinated spectrum sensing in cognitive radio networks Ieee Communications Letters. 17: 812-815. DOI: 10.1109/Lcomm.2013.021913.130013  0.335
2013 Barik S, Vikalo H. Expected complexity of sphere decoding for sparse integer least-square problems Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4668-4672. DOI: 10.1109/ICASSP.2013.6638545  0.325
2012 Shen X, Vikalo H. ParticleCall: a particle filter for base calling in next-generation sequencing systems. Bmc Bioinformatics. 13: 160. PMID 22776067 DOI: 10.1186/1471-2105-13-160  0.356
2012 Das S, Vikalo H. OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing. Bioinformatics (Oxford, England). 28: 1677-83. PMID 22569177 DOI: 10.1093/Bioinformatics/Bts256  0.367
2012 Hassibi A, Vikalo H, Riechmann JL, Hassibi B. FRET-based real-time DNA microarrays. Methods in Molecular Biology (Clifton, N.J.). 815: 147-59. PMID 22130990 DOI: 10.1007/978-1-61779-424-7_12  0.627
2012 Shamaiah M, Banerjee S, Vikalo H. Greedy sensor selection under channel uncertainty Ieee Wireless Communications Letters. 1: 376-379. DOI: 10.1109/Wcl.2012.053112.120229  0.328
2012 Wu T, Vikalo H. Joint parameter estimation and base-calling for pyrosequencing systems Ieee Transactions On Signal Processing. 60: 4376-4386. DOI: 10.1109/Tsp.2012.2197616  0.433
2012 Shamaiah M, Shen X, Vikalo H. Estimating parameters of sampled diffusion processes in affinity biosensors Ieee Transactions On Signal Processing. 60: 3228-3239. DOI: 10.1109/Tsp.2012.2190596  0.388
2011 Shamaiah M, Vikalo H. Estimating time-varying sparse signals under communication constraints Ieee Transactions On Signal Processing. 59: 2961-2964. DOI: 10.1109/Tsp.2011.2128312  0.357
2010 Vikalo H, Gokdemir M. An MCMC algorithm for target estimation in real-time DNA microarrays Eurasip Journal On Advances in Signal Processing. 2010. DOI: 10.1155/2010/736301  0.425
2010 Shen X, Vikalo H. Inferring parameters of gene regulatory networks via particle filtering Eurasip Journal On Advances in Signal Processing. 2010. DOI: 10.1155/2010/204612  0.313
2010 Vikalo H, Hassibi B, Hassibi A. Limits of performance of quantitative polymerase chain reaction systems Ieee Transactions On Information Theory. 56: 688-695. DOI: 10.1109/Tit.2009.2037088  0.65
2010 Wu T, Vikalo H. Maximum likelihood DNA sequence detection via sphere decoding Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 586-589. DOI: 10.1109/ICASSP.2010.5495564  0.306
2010 Lee SH, Shamaiah M, Vikalo H. Optimal estimation in DNA microarrays via global optimization Conference Record - Asilomar Conference On Signals, Systems and Computers. 1765-1769. DOI: 10.1109/ACSSC.2010.5757844  0.32
2009 Hassibi A, Vikalo H, Riechmann JL, Hassibi B. Real-time DNA microarray analysis. Nucleic Acids Research. 37: e132. PMID 19723688 DOI: 10.1093/Nar/Gkp675  0.633
2009 El-Khamy M, Vikalo H, Hassibi B, McEliece RJ. Performance of sphere decoding of block codes Ieee Transactions On Communications. 57: 2940-2950. DOI: 10.1109/Tcomm.2009.10.080402  0.596
2009 Gokdemir M, Vikalo H. A particle filtering algorithm for parameter estimation in real-time biosensor arrays 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174364  0.301
2009 Das S, Vikalo H, Hassibi A. On scaling laws of biosensors: A stochastic approach Journal of Applied Physics. 105. DOI: 10.1063/1.3116125  0.309
2008 Stojnic M, Vikalo H, Hassibi B. Speeding up the sphere decoder with H∞ and SDP inspired lower bounds Ieee Transactions On Signal Processing. 56: 712-726. DOI: 10.1109/Tsp.2007.906697  0.636
2008 Parvaresh F, Vikalo H, Misra S, Hassibi B. Recovering sparse signals using sparse measurement matrices in compressed DNA microarrays Ieee Journal On Selected Topics in Signal Processing. 2: 275-285. DOI: 10.1109/Jstsp.2008.924384  0.634
2008 Vikalo H, Hassibi B, Hassibi A. Modeling and estimation for real-time microarrays Ieee Journal On Selected Topics in Signal Processing. 2: 286-296. DOI: 10.1109/Jstsp.2008.924383  0.673
2008 Vikalo H, Hassibi B, Hassibia A. On estimation in real-time microarrays Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 577-580. DOI: 10.1109/ICASSP.2008.4517675  0.625
2008 Vikalo H, Hassibi A. Estimation in real-time affinity-based biosensors Conference Record - Asilomar Conference On Signals, Systems and Computers. 1919-1922. DOI: 10.1109/ACSSC.2008.5074763  0.301
2007 Stojnic M, Hassibi B, Vikalo H. PEP analysis of SDP-based non-coherent signal detection Ieee International Symposium On Information Theory - Proceedings. 2916-2920. DOI: 10.1109/ISIT.2007.4557661  0.385
2007 Vikalo H, Hassibi B, Hassibi A. ML estimation of DNA initial copy number in polymerase chain reaction (PCR) processes Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 1: I417-I420. DOI: 10.1109/ICASSP.2007.366705  0.614
2007 Stojnic M, Hassibi B, Vikalo H. PEP analysis of the SDP based joint channel estimation and signal detection Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: III69-III72. DOI: 10.1109/ICASSP.2007.366474  0.385
2007 Vikalo H, Hassibi B, Stojnic M, Hassibi A. Modeling the kinetics of hybridization in microarrays Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2007.4365828  0.63
2007 Vikalo H, Hassibi B, Hassibi A. Signal processing aspects of real-time DNA microarrays 2007 2nd Ieee International Workshop On Computational Advances in Multi-Sensor Adaptive Processing, Campsap. 165-168. DOI: 10.1109/CAMSAP.2007.4497991  0.621
2007 Vikalo H, Hassibi B, Hassibi A. Signal processing for real-time DNA microarrays Conference Record - Asilomar Conference On Signals, Systems and Computers. 170-174. DOI: 10.1109/ACSSC.2007.4487188  0.626
2007 Hassibi A, Vikalo H, Hajimiri A. On noise processes and limits of performance in biosensors Journal of Applied Physics. 102. DOI: 10.1063/1.2748624  0.347
2006 Stojnic M, Vikalo H, Hassibi B. Rate maximization in multi-antenna broadcast channels with linear preprocessing Ieee Transactions On Wireless Communications. 5: 2338-2342. DOI: 10.1109/Twc.2006.1687754  0.62
2006 Vikalo H, Hassibi B, Stoica P. Efficient joint maximum-likelihood channel estimation and signal detection Ieee Transactions On Wireless Communications. 5: 1838-1845. DOI: 10.1109/Twc.2006.1673095  0.653
2006 Vikalo H, Hassibi B. On joint detection and decoding of linear block codes on gaussian vector channels Ieee Transactions On Signal Processing. 54: 3330-3342. DOI: 10.1109/Tsp.2006.877675  0.658
2006 Vikalo H, Hassibi B, Hassibi A. A statistical model for microarrays, optimal estimation algorithms, and limits of performance Ieee Transactions On Signal Processing. 54: 2444-2455. DOI: 10.1109/Tsp.2006.873716  0.658
2006 Vikalo H, Hassibi B, Mitra U. Sphere-constrained ML detection for frequency-selective channels Ieee Transactions On Communications. 54: 1179-1183. DOI: 10.1109/Tcomm.2006.877946  0.649
2006 Vikalo H, Hassibi B, Hassibi A. On joint maximum-likelihood estimation of PCR efficiency and initial amount of target 2006 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2006. 47-48. DOI: 10.1109/GENSIPS.2006.353149  0.594
2006 Kailath T, Vikalo H, Hassibi B. MIMO receive algorithms Space-Time Wireless Systems: From Array Processing to Mimo Communications. 302-321. DOI: 10.1017/CBO9780511616815.016  0.444
2006 Vikalo H, Hassibi B, Hassibi A. On limits of performance of DNA microarrays Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2: II1012-II1015.  0.598
2005 Stojnic M, Vikalo H, Hassibi B. Invited paper: An efficient H∞ estimation approach to speed up the sphere decoder 2005 International Conference On Wireless Networks, Communications and Mobile Computing. 2: 1483-1488. DOI: 10.1109/WIRLES.2005.1549632  0.308
2005 Hassibi B, Vikalo H. On the sphere-decoding algorithm I. Expected complexity Ieee Transactions On Signal Processing. 53: 2806-2818. DOI: 10.1109/Tsp.2005.850352  0.634
2005 Vikalo H, Hassibi B. On the sphere-decoding algorithm II. Generalizations, second-order statistics, and applications to communications Ieee Transactions On Signal Processing. 53: 2819-2834. DOI: 10.1109/Tsp.2005.850350  0.644
2005 Stojnic M, Vikalo H, Hassibi B. An H-infinity based lower bound to speed up the sphere decoder Ieee Workshop On Signal Processing Advances in Wireless Communications, Spawc. 2005: 751-755. DOI: 10.1109/SPAWC.2005.1506240  0.321
2005 Vikalo H, Hassibi B, Erdogan AT, Kailath T. On robust signal reconstruction in noisy filter banks Signal Processing. 85: 1-14. DOI: 10.1016/J.Sigpro.2004.08.011  0.649
2004 Vikalo H, Hassibi B, Kailath T. Iterative decoding for MIMO channels via modified sphere decoding Ieee Transactions On Wireless Communications. 3: 2299-2311. DOI: 10.1109/Twc.2004.837271  0.711
2004 Vikalo H, Hassibi B, Hochwald B, Kailath T. On the capacity of frequency-selective channels in training-based transmission schemes Ieee Transactions On Signal Processing. 52: 2572-2583. DOI: 10.1109/Tsp.2004.832020  0.65
2003 Stoica P, Vikalo H, Hassibi B. Joint maximum-likelihood channel estimation and signal detection for SIMO channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 13-16.  0.314
2003 Vikalo H, Hassibi B. On joint ML detection and decoding for linear block codes Ieee International Symposium On Information Theory - Proceedings. 275.  0.333
2003 Vikalo H, Hassibi B, Mitra U. Sphere-constrained ML detection for channels with memory Conference Record of the Asilomar Conference On Signals, Systems and Computers. 1: 672-676.  0.312
2002 Vikalo H, Hassibi B. Maximum-likelihood sequence detection of multiple antenna systems over dispersive channels via sphere decoding Eurasip Journal On Applied Signal Processing. 2002: 525-531. DOI: 10.1155/S1110865702204011  0.639
2002 Vikalo H, Hassibi B. Towards closing the capacity gap on multiple antenna channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: III/2385-III/2388.  0.322
2001 Vikalo H, Hassibi B, Hochwald B, Kailath T. Optimal training for frequency-selective fading channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 2105-2108.  0.419
2000 Vikalo H, Erdogan AT, Hassibi B, Kailath T. Exponential-quadratic optimal signal reconstruction in noisy filter banks Proceedings of Spie - the International Society For Optical Engineering. 4119: 1020-1028. DOI: 10.1117/12.408589  0.428
2000 Mudulodu S, Vikalo H, Paulraj A, Kailath T. CDMA multiuser detection based on state-space estimation techniques Conference Record of the Asilomar Conference On Signals, Systems and Computers. 2: 1278-1282.  0.454
2000 Vikalo H, Hassibi B, Kailath T. On robust multiuser detection Conference Record of the Asilomar Conference On Signals, Systems and Computers. 2: 1168-1172.  0.434
1999 Vikalo H, Hassibi B, Kailath T. On H∞ optimal signal reconstruction in noisy filter banks Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: 1493-1496.  0.422
Show low-probability matches.