Douglas S. Clark - Publications

Affiliations: 
Chemistry University of California, Berkeley, Berkeley, CA 
Area:
Biochemical engineering and biocatalysis
Website:
http://chemistry.berkeley.edu/faculty/cbe/clark

199 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Nierode GJ, Gopal S, Kwon P, Clark DS, Schaffer DV, Dordick JS. High-throughput identification of factors promoting neuronal differentiation of human neural progenitor cells in microscale 3D cell culture. Biotechnology and Bioengineering. PMID 30229860 DOI: 10.1002/bit.26839  1
2018 Muckom R, McFarland S, Yang C, Perea B, Gentes M, Murugappan A, Tran E, Dordick JS, Clark DS, Schaffer DV. High-Throughput Combinatorial Screening Reveals Interactions Between Signaling Molecules that Regulate Adult Neural Stem Cell Fate. Biotechnology and Bioengineering. PMID 30102775 DOI: 10.1002/bit.26815  1
2017 Wu VW, Dana CM, Iavarone AT, Clark DS, Glass NL. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. Mbio. 8. PMID 28096492 DOI: 10.1128/mBio.02231-16  0.92
2016 Nierode GJ, Perea BC, McFarland SK, Pascoal JF, Clark DS, Schaffer DV, Dordick JS. High-Throughput Toxicity and Phenotypic Screening of 3D Human Neural Progenitor Cell Cultures on a Microarray Chip Platform. Stem Cell Reports. 7: 970-982. PMID 28157485 DOI: 10.1016/j.stemcr.2016.10.001  1
2016 Glover DJ, Giger L, Kim SS, Naik RR, Clark DS. Geometrical assembly of ultrastable protein templates for nanomaterials. Nature Communications. 7: 11771. PMID 27249579 DOI: 10.1038/ncomms11771  1
2016 Baer ZC, Bormann S, Sreekumar S, Grippo A, Toste FD, Blanch HW, Clark DS. Co-production of acetone and ethanol with molar ratio control enables production of improved gasoline or jet fuel blends. Biotechnology and Bioengineering. PMID 26987294 DOI: 10.1002/bit.25978  1
2016 Wolski PW, Dana CM, Clark DS, Blanch HW. Engineering ionic liquid-tolerant cellulases for biofuels production. Protein Engineering, Design & Selection : Peds. PMID 26819239 DOI: 10.1093/protein/gzv066  1
2016 Remington BA, Atherton LJ, Benedetti LR, Berzak-Hopkins L, Bradley DK, Callahan DA, Casey DT, Celliers PM, Cerjan CJ, Clark DS, Dewald EL, Dittrich TR, Dixit SN, Döppner T, Edgell DH, et al. Hydrodynamic instabilities and mix studies on NIF: Predictions, observations, and a path forward Journal of Physics: Conference Series. 688. DOI: 10.1088/1742-6596/688/1/012090  0.44
2016 Clark DS, Eder DC, Haan SW, Hammel BA, Hinkel DE, Jones OS, Marinak MM, Milovich JL, Patel PK, Salmonson JD, Sepke SM, Thomas CA, Town RPJ. Progress in modelling ignition implosion experiments on the National Ignition Facility Journal of Physics: Conference Series. 688. DOI: 10.1088/1742-6596/688/1/012011  0.44
2016 Robey HF, Smalyuk VA, Milovich JL, Döppner T, Casey DT, Baker KL, Peterson JL, Bachmann B, Berzak Hopkins LF, Bond E, Caggiano JA, Callahan DA, Celliers PM, Cerjan C, Clark DS, et al. Performance of indirectly driven capsule implosions on the National Ignition Facility using adiabat-shaping Physics of Plasmas. 23. DOI: 10.1063/1.4944821  0.44
2015 Carrico ZM, Strobel KL, Atreya ME, Clark DS, Francis MB. Simultaneous selection and counter-selection for the directed evolution of proteases in E. coli using a cytoplasmic anchoring strategy. Biotechnology and Bioengineering. PMID 26666461 DOI: 10.1002/bit.25904  1
2015 Strobel KL, Pfeiffer KA, Blanch HW, Clark DS. Engineering Cel7A Carbohydrate Binding Module and Linker for Reduced Lignin Inhibition. Biotechnology and Bioengineering. PMID 26616493 DOI: 10.1002/bit.25889  1
2015 Casey DT, Milovich JL, Smalyuk VA, Clark DS, Robey HF, Pak A, MacPhee AG, Baker KL, Weber CR, Ma T, Park HS, Döppner T, Callahan DA, Haan SW, Patel PK, et al. Improved Performance of High Areal Density Indirect Drive Implosions at the National Ignition Facility using a Four-Shock Adiabat Shaped Drive. Physical Review Letters. 115: 105001. PMID 26382681  0.44
2015 Atreya ME, Strobel KL, Clark DS. Alleviating product inhibition in cellulase enzyme Cel7A. Biotechnology and Bioengineering. PMID 26302366 DOI: 10.1002/bit.25809  1
2015 Strobel KL, Pfeiffer KA, Blanch HW, Clark DS. Structural insights into the affinity of Cel7A carbohydrate-binding module for lignin. The Journal of Biological Chemistry. 290: 22818-26. PMID 26209638 DOI: 10.1074/jbc.M115.673467  1
2015 Pfeiffer KA, Sorek H, Roche CM, Strobel KL, Blanch HW, Clark DS. Evaluating endoglucanase Cel7B-lignin interaction mechanisms and kinetics using quartz crystal microgravimetry. Biotechnology and Bioengineering. 112: 2256-66. PMID 25994114 DOI: 10.1002/bit.25657  1
2015 Chokhawala HA, Roche CM, Kim TW, Atreya ME, Vegesna N, Dana CM, Blanch HW, Clark DS. Mutagenesis of Trichoderma reesei endoglucanase I: impact of expression host on activity and stability at elevated temperatures. Bmc Biotechnology. 15: 11. PMID 25879765 DOI: 10.1186/s12896-015-0118-z  1
2015 Peterson JL, Berzak Hopkins LF, Jones OS, Clark DS. Differential ablator-fuel adiabat tuning in indirect-drive implosions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 031101. PMID 25871043  0.44
2015 Sreekumar S, Baer ZC, Pazhamalai A, Gunbas G, Grippo A, Blanch HW, Clark DS, Toste FD. Production of an acetone-butanol-ethanol mixture from Clostridium acetobutylicum and its conversion to high-value biofuels. Nature Protocols. 10: 528-37. PMID 25719271 DOI: 10.1038/nprot.2015.029  1
2015 Glover DJ, Clark DS. Oligomeric assembly is required for chaperone activity of the filamentous γ-prefoldin Febs Journal. DOI: 10.1111/febs.13341  1
2015 Casey DT, Milovich JL, Smalyuk VA, Clark DS, Robey HF, Pak A, MacPhee AG, Baker KL, Weber CR, Ma T, Park HS, Döppner T, Callahan DA, Haan SW, Patel PK, et al. Improved Performance of High Areal Density Indirect Drive Implosions at the National Ignition Facility using a Four-Shock Adiabat Shaped Drive Physical Review Letters. 115. DOI: 10.1103/PhysRevLett.115.105001  0.44
2015 Peterson JL, Berzak Hopkins LF, Jones OS, Clark DS. Differential ablator-fuel adiabat tuning in indirect-drive implosions Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 91. DOI: 10.1103/PhysRevE.91.031101  0.44
2015 Milovich JL, Robey HF, Clark DS, Baker KL, Casey DT, Cerjan C, Field J, MacPhee AG, Pak A, Patel PK, Peterson JL, Smalyuk VA, Weber CR. Design of indirectly driven, high-compression Inertial Confinement Fusion implosions with improved hydrodynamic stability using a 4-shock adiabat-shaped drive Physics of Plasmas. 22. DOI: 10.1063/1.4935922  0.44
2015 Smalyuk VA, Robey HF, Döppner T, Jones OS, Milovich JL, Bachmann B, Baker KL, Berzak Hopkins LF, Bond E, Callahan DA, Casey DT, Celliers PM, Cerjan C, Clark DS, Dixit SN, et al. First results of radiation-driven, layered deuterium-tritium implosions with a 3-shock adiabat-shaped drive at the National Ignition Facility Physics of Plasmas. 22. DOI: 10.1063/1.4929912  0.44
2015 MacPhee AG, Peterson JL, Casey DT, Clark DS, Haan SW, Jones OS, Landen OL, Milovich JL, Robey HF, Smalyuk VA. Stabilization of high-compression, indirect-drive inertial confinement fusion implosions using a 4-shock adiabat-shaped drive Physics of Plasmas. 22. DOI: 10.1063/1.4928909  0.44
2015 Smalyuk VA, Weber SV, Casey DT, Clark DS, Field JE, Haan SW, Hammel BA, Hamza AV, Hoover DE, Landen OL, Nikroo A, Robey HF, Weber CR. Hydrodynamic instability growth of three-dimensional, "native-roughness" modulations in x-ray driven, spherical implosions at the National Ignition Facility Physics of Plasmas. 22. DOI: 10.1063/1.4926591  0.44
2015 Meezan NB, Berzak Hopkins LF, Le Pape S, Divol L, Mackinnon AJ, Döppner T, Ho DD, Jones OS, Khan SF, Ma T, Milovich JL, Pak AE, Ross JS, Thomas CA, Benedetti LR, ... ... Clark DS, et al. Cryogenic tritium-hydrogen-deuterium and deuterium-tritium layer implosions with high density carbon ablators in near-vacuum hohlraums Physics of Plasmas. 22. DOI: 10.1063/1.4921947  0.44
2015 Clark DS, Robey HF, Smalyuk VA. A strategy for reducing stagnation phase hydrodynamic instability growth in inertial confinement fusion implosions Physics of Plasmas. 22. DOI: 10.1063/1.4921134  0.44
2015 Baker KL, Robey HF, Milovich JL, Jones OS, Smalyuk VA, Casey DT, MacPhee AG, Pak A, Celliers PM, Clark DS, Landen OL, Peterson JL, Berzak-Hopkins LF, Weber CR, Haan SW, et al. Adiabat-shaping in indirect drive inertial confinement fusion Physics of Plasmas. 22. DOI: 10.1063/1.4919694  0.44
2015 Shin C, Baer ZC, Chen XC, Ozcam AE, Clark DS, Balsara NP. Block copolymer pervaporation membrane for in situ product removal during acetone-butanol-ethanol fermentation Journal of Membrane Science. 484: 57-63. DOI: 10.1016/j.memsci.2015.03.005  1
2014 Casey DT, Smalyuk VA, Raman KS, Peterson JL, Berzak Hopkins L, Callahan DA, Clark DS, Dewald EL, Dittrich TR, Haan SW, Hinkel DE, Hoover D, Hurricane OA, Kroll JJ, Landen OL, et al. Reduced instability growth with high-adiabat high-foot implosions at the National Ignition Facility. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 011102. PMID 25122242 DOI: 10.1103/PhysRevE.90.011102  0.44
2014 Bormann S, Baer ZC, Sreekumar S, Kuchenreuther JM, Dean Toste F, Blanch HW, Clark DS. Engineering Clostridium acetobutylicum for production of kerosene and diesel blendstock precursors. Metabolic Engineering. 25: 124-30. PMID 25046159 DOI: 10.1016/j.ymben.2014.07.003  1
2014 Sreekumar S, Baer ZC, Gross E, Padmanaban S, Goulas K, Gunbas G, Alayoglu S, Blanch HW, Clark DS, Toste FD. Chemocatalytic upgrading of tailored fermentation products toward biodiesel. Chemsuschem. 7: 2445-8. PMID 25044817 DOI: 10.1002/cssc.201402244  1
2014 Smalyuk VA, Casey DT, Clark DS, Edwards MJ, Haan SW, Hamza A, Hoover DE, Hsing WW, Hurricane O, Kilkenny JD, Kroll J, Landen OL, Moore A, Nikroo A, Peterson L, et al. First measurements of hydrodynamic instability growth in indirectly driven implosions at ignition-relevant conditions on the National Ignition Facility. Physical Review Letters. 112: 185003. PMID 24856703 DOI: 10.1103/PhysRevLett.112.185003  0.44
2014 Kwon SJ, Lee DW, Shah DA, Ku B, Jeon SY, Solanki K, Ryan JD, Clark DS, Dordick JS, Lee MY. High-throughput and combinatorial gene expression on a chip for metabolism-induced toxicology screening. Nature Communications. 5: 3739. PMID 24799042 DOI: 10.1038/ncomms4739  1
2014 Piao H, Froula J, Du C, Kim TW, Hawley ER, Bauer S, Wang Z, Ivanova N, Clark DS, Klenk HP, Hess M. Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation. Biotechnology and Bioengineering. 111: 1550-65. PMID 24728961 DOI: 10.1002/bit.25250  1
2014 Roche CM, Glass NL, Blanch HW, Clark DS. Engineering the filamentous fungus Neurospora crassa for lipid production from lignocellulosic biomass. Biotechnology and Bioengineering. 111: 1097-107. PMID 24700367 DOI: 10.1002/bit.25211  1
2014 Smalyuk VA, Tipton RE, Pino JE, Casey DT, Grim GP, Remington BA, Rowley DP, Weber SV, Barrios M, Benedetti LR, Bleuel DL, Bradley DK, Caggiano JA, Callahan DA, Cerjan CJ, ... Clark DS, et al. Measurements of an ablator-gas atomic mix in indirectly driven implosions at the National Ignition Facility. Physical Review Letters. 112: 025002. PMID 24484021 DOI: 10.1103/PhysRevLett.112.025002  0.44
2014 Dana CM, Dotson-Fagerstrom A, Roche CM, Kal SM, Chokhawala HA, Blanch HW, Clark DS. The importance of pyroglutamate in cellulase Cel7A. Biotechnology and Bioengineering. 111: 842-7. PMID 24375151 DOI: 10.1002/bit.25178  1
2014 Pavlovich MJ, Clark DS, Graves DB. Quantification of air plasma chemistry for surface disinfection Plasma Sources Science and Technology. 23. DOI: 10.1088/0963-0252/23/6/065036  1
2014 Pavlovich MJ, Ono T, Galleher C, Curtis B, Clark DS, Machala Z, Graves DB. Air spark-like plasma source for antimicrobial NOx generation Journal of Physics D: Applied Physics. 47. DOI: 10.1088/0022-3727/47/50/505202  0.64
2014 Weber SV, Casey DT, Eder DC, Kilkenny JD, Pino JE, Smalyuk VA, Grim GP, Remington BA, Rowley DP, Yeamans CB, Tipton RE, Barrios M, Benedetti R, Berzak Hopkins L, Bleuel DL, ... ... Clark DS, et al. Simulations of indirectly driven gas-filled capsules at the National Ignition Facility Physics of Plasmas. 21. DOI: 10.1063/1.4901598  0.44
2014 Clark DS, Milovich JL, Hinkel DE, Salmonson JD, Peterson JL, Berzak Hopkins LF, Eder DC, Haan SW, Jones OS, Marinak MM, Robey HF, Smalyuk VA, Weber CR. A survey of pulse shape options for a revised plastic ablator ignition design Physics of Plasmas. 21. DOI: 10.1063/1.4901572  0.44
2014 Peterson JL, Clark DS, Masse LP, Suter LJ. The effects of early time laser drive on hydrodynamic instability growth in National Ignition Facility implosions Physics of Plasmas. 21. DOI: 10.1063/1.4896708  0.44
2014 Yi SA, Simakov AN, Wilson DC, Olson RE, Kline JL, Clark DS, Hammel BA, Milovich JL, Salmonson JD, Kozioziemski BJ, Batha SH. Hydrodynamic instabilities in beryllium targets for the National Ignition Facility Physics of Plasmas. 21. DOI: 10.1063/1.4894112  0.44
2014 Raman KS, Smalyuk VA, Casey DT, Haan SW, Hoover DE, Hurricane OA, Kroll JJ, Nikroo A, Peterson JL, Remington BA, Robey HF, Clark DS, Hammel BA, Landen OL, Marinak MM, et al. An in-flight radiography platform to measure hydrodynamic instability growth in inertial confinement fusion capsules at the National Ignition Facility Physics of Plasmas. 21. DOI: 10.1063/1.4890570  0.44
2014 Smalyuk VA, Barrios M, Caggiano JA, Casey DT, Cerjan CJ, Clark DS, Edwards MJ, Frenje JA, Gatu-Johnson M, Glebov VY, Grim G, Haan SW, Hammel BA, Hamza A, Hoover DE, et al. Hydrodynamic instability growth and mix experiments at the National Ignition Facility Physics of Plasmas. 21. DOI: 10.1063/1.4872026  0.44
2014 Simakov AN, Wilson DC, Yi SA, Kline JL, Clark DS, Milovich JL, Salmonson JD, Batha SH. Optimized beryllium target design for indirectly driven inertial confinement fusion experiments on the national ignition facility Physics of Plasmas. 21. DOI: 10.1063/1.4864331  0.44
2014 Glover D, Giger L, Reese H, Clark DS. Engineering the self-assembly of ultrastable protein filaments into 2D and 3D multifunctional nanostructures Nanoscale Science and Engineering Forum 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 44.  1
2013 Scott RH, Clark DS, Bradley DK, Callahan DA, Edwards MJ, Haan SW, Jones OS, Spears BK, Marinak MM, Town RP, Norreys PA, Suter LJ. Numerical modeling of the sensitivity of x-ray driven implosions to low-mode flux asymmetries. Physical Review Letters. 110: 075001. PMID 25166377 DOI: 10.1103/PhysRevLett.110.075001  0.44
2013 Ma T, Patel PK, Izumi N, Springer PT, Key MH, Atherton LJ, Benedetti LR, Bradley DK, Callahan DA, Celliers PM, Cerjan CJ, Clark DS, Dewald EL, Dixit SN, Döppner T, et al. Onset of hydrodynamic mix in high-velocity, highly compressed inertial confinement fusion implosions. Physical Review Letters. 111: 085004. PMID 24010449  0.44
2013 Roche CM, Blanch HW, Clark DS, Glass NL. Physiological role of Acyl coenzyme A synthetase homologs in lipid metabolism in Neurospora crassa. Eukaryotic Cell. 12: 1244-57. PMID 23873861 DOI: 10.1128/EC.00079-13  1
2013 Koch JA, Landen OL, Suter LJ, Masse LP, Clark DS, Ross JS, Mackinnon AJ, Meezan NB, Thomas CA, Ping Y. Refraction-enhanced backlit imaging of axially symmetric inertial confinement fusion plasmas. Applied Optics. 52: 3538-56. PMID 23736240 DOI: 10.1364/AO.52.003538  0.44
2013 Fox JM, Jess P, Jambusaria RB, Moo GM, Liphardt J, Clark DS, Blanch HW. A single-molecule analysis reveals morphological targets for cellulase synergy. Nature Chemical Biology. 9: 356-61. PMID 23563526 DOI: 10.1038/nchembio.1227  1
2013 Glover DJ, Giger L, Kim JR, Clark DS. Engineering protein filaments with enhanced thermostability for nanomaterials. Biotechnology Journal. 8: 228-36. PMID 22965482 DOI: 10.1002/biot.201200009  1
2013 Schneider E, Clark DS. Cytochrome P450 (CYP) enzymes and the development of CYP biosensors. Biosensors & Bioelectronics. 39: 1-13. PMID 22809523 DOI: 10.1016/j.bios.2012.05.043  1
2013 Ma T, Patel PK, Izumi N, Springer PT, Key MH, Atherton LJ, Benedetti LR, Bradley DK, Callahan DA, Celliers PM, Cerjan CJ, Clark DS, Dewald EL, Dixit SN, Döppner T, et al. Onset of hydrodynamic Mix in high-velocity, highly compressed inertial confinement fusion implosions Physical Review Letters. 111. DOI: 10.1103/PhysRevLett.111.085004  0.44
2013 Pavlovich MJ, Chang HW, Sakiyama Y, Clark DS, Graves DB. Ozone correlates with antibacterial effects from indirect air dielectric barrier discharge treatment of water Journal of Physics D: Applied Physics. 46. DOI: 10.1088/0022-3727/46/14/145202  1
2013 Edwards MJ, Patel PK, Lindl JD, Atherton LJ, Glenzer SH, Haan SW, Kilkenny JD, Landen OL, Moses EI, Nikroo A, Petrasso R, Sangster TC, Springer PT, Batha S, Benedetti R, ... ... Clark DS, et al. Progress towards ignition on the National Ignition Facility Physics of Plasmas. 20. DOI: 10.1063/1.4816115  0.44
2013 Grim GP, Guler N, Merrill FE, Morgan GL, Danly CR, Volegov PL, Wilde CH, Wilson DC, Clark DS, Hinkel DE, Jones OS, Raman KS, Izumi N, Fittinghoff DN, Drury OB, et al. Nuclear imaging of the fuel assembly in ignition experiments Physics of Plasmas. 20. DOI: 10.1063/1.4807291  0.44
2013 Meezan NB, Mackinnon AJ, Hicks DG, Dewald EL, Tommasini R, Le Pape S, Döppner T, Ma T, Farley DR, Kalantar DH, Di Nicola P, Callahan DA, Robey HF, Thomas CA, Prisbrey ST, ... ... Clark DS, et al. X-ray driven implosions at ignition relevant velocities on the National Ignition Facility Physics of Plasmas. 20. DOI: 10.1063/1.4803915  0.44
2013 Clark DS, Hinkel DE, Eder DC, Jones OS, Haan SW, Hammel BA, Marinak MM, Milovich JL, Robey HF, Suter LJ, Town RPJ. Detailed implosion modeling of deuterium-tritium layered experiments on the National Ignition Facility Physics of Plasmas. 20. DOI: 10.1063/1.4802194  0.44
2013 Wilson DC, Aragonez RJ, Archuleta TN, Atkinson DP, Barrios MA, Batha SH, Bower DE, Bradley DK, Buckles RA, Clark DD, Clark DS, Clark DJ, Cradick JR, Danly CR, Day RD, et al. Comparing neutron and X-ray images from NIF implosions Epj Web of Conferences. 59. DOI: 10.1051/epjconf/20135904002  0.44
2013 Ho DDM, Salmonson JD, Clark DS, Lindl JD, Haan SW, Amendt P, Wu KJ. Ignition capsules with aerogel-supported liquid DT fuel for the National Ignition Facility Epj Web of Conferences. 59. DOI: 10.1051/epjconf/20135902012  0.44
2013 Celliers PM, Robey HF, Boehly TR, Alger E, Azevedo S, Berzins LV, Bhandarkar SD, Bowers MW, Brereton SJ, Callahan D, Castro C, Chandrasekaran H, Choate C, Clark DS, Coffee KR, et al. Shock timing on the national ignition facility: First experiments Epj Web of Conferences. 59. DOI: 10.1051/epjconf/20135902004  0.44
2013 Meezan NB, Hicks DG, Callahan DA, Olson RE, Schneider MS, Thomas CA, Robey HF, Celliers PM, Kline JL, Dixit SN, Michel PA, Jones OS, Clark DS, Ralph JE, Döppner T, et al. Hohlraum designs for high velocity implosions on NIF Epj Web of Conferences. 59. DOI: 10.1051/epjconf/20135902002  0.44
2013 Pavlovich MJ, Sakiyama Y, Clark DS, Graves DB. Antimicrobial synergy between ambient-gas plasma and UVA treatment of aqueous solution Plasma Processes and Polymers. 10: 1051-1060. DOI: 10.1002/ppap.201300065  1
2013 Pavlovich MJ, Chen Z, Sakiyama Y, Clark DS, Graves DB. Effect of discharge parameters and surface characteristics on ambient-gas plasma disinfection Plasma Processes and Polymers. 10: 69-76. DOI: 10.1002/ppap.201200073  1
2013 Haan SW, Atherton J, Clark DS, Hammel BA, Callahan DA, Cerjan CJ, Dewald EL, Dixit S, Edwards MJ, Glenzer S, Hatchett SP, Hicks D, Jones OS, Landen OL, Lindl JD, et al. Nif ignition campaign target performance and requirements: Status may 2012 Fusion Science and Technology. 63: 67-75.  0.44
2013 Pavlovich MJ, Galleher C, Ono T, Machala Z, Clark DS, Graves DB. Ambient-air plasmas for frugal and sustainable water disinfection in the developing world Sustainable Engineering Forum 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 233.  0.64
2013 Pavlovich MJ, Galleher C, Ono T, Machala Z, Clark DS, Graves DB. Ambient-air plasmas for frugal and sustainable water disinfection in the developing world Sustainable Engineering Forum 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 233.  0.64
2012 Anbarasan P, Baer ZC, Sreekumar S, Gross E, Binder JB, Blanch HW, Clark DS, Toste FD. Integration of chemical catalysis with extractive fermentation to produce fuels. Nature. 491: 235-9. PMID 23135469 DOI: 10.1038/nature11594  1
2012 Shill K, Miller K, Clark DS, Blanch HW. A model for optimizing the enzymatic hydrolysis of ionic liquid-pretreated lignocellulose. Bioresource Technology. 126: 290-7. PMID 23079416 DOI: 10.1016/j.biortech.2012.08.062  1
2012 Mackinnon AJ, Kline JL, Dixit SN, Glenzer SH, Edwards MJ, Callahan DA, Meezan NB, Haan SW, Kilkenny JD, Döppner T, Farley DR, Moody JD, Ralph JE, MacGowan BJ, Landen OL, ... ... Clark DS, et al. Assembly of high-areal-density deuterium-tritium fuel from indirectly driven cryogenic implosions. Physical Review Letters. 108: 215005. PMID 23003274 DOI: 10.1103/PhysRevLett.108.215005  0.44
2012 Meli L, Jordan ET, Clark DS, Linhardt RJ, Dordick JS. Influence of a three-dimensional, microarray environment on human cell culture in drug screening systems. Biomaterials. 33: 9087-96. PMID 22998815 DOI: 10.1016/j.biomaterials.2012.08.065  1
2012 Huffer S, Roche CM, Blanch HW, Clark DS. Escherichia coli for biofuel production: bridging the gap from promise to practice. Trends in Biotechnology. 30: 538-45. PMID 22921756 DOI: 10.1016/j.tibtech.2012.07.002  1
2012 Clark DS, Blanch HW, Wang DI, Demain AL, Wandrey C, Hu WS, Schultz JS, Shuler ML, Hoare M, Lightfoot EN, Humphrey AE, Dordick JS, Asenjo JA. Elmer L. Gaden, Jr. Tribute. Biotechnology and Bioengineering. 109: 2417-21. PMID 22910882 DOI: 10.1002/bit.24610  1
2012 Dana CM, Saija P, Kal SM, Bryan MB, Blanch HW, Clark DS. Biased clique shuffling reveals stabilizing mutations in cellulase Cel7A. Biotechnology and Bioengineering. 109: 2710-9. PMID 22887329 DOI: 10.1002/bit.24708  1
2012 Carrico ZM, Farkas ME, Zhou Y, Hsiao SC, Marks JD, Chokhawala H, Clark DS, Francis MB. N-Terminal labeling of filamentous phage to create cancer marker imaging agents. Acs Nano. 6: 6675-80. PMID 22830952 DOI: 10.1021/nn301134z  1
2012 Liszka MJ, Clark ME, Schneider E, Clark DS. Nature versus nurture: developing enzymes that function under extreme conditions. Annual Review of Chemical and Biomolecular Engineering. 3: 77-102. PMID 22468597 DOI: 10.1146/annurev-chembioeng-061010-114239  1
2012 Fox JM, Levine SE, Blanch HW, Clark DS. An evaluation of cellulose saccharification and fermentation with an engineered Saccharomyces cerevisiae capable of cellobiose and xylose utilization. Biotechnology Journal. 7: 361-73. PMID 22228702 DOI: 10.1002/biot.201100209  1
2012 Fox JM, Levine SE, Clark DS, Blanch HW. Initial- and processive-cut products reveal cellobiohydrolase rate limitations and the role of companion enzymes. Biochemistry. 51: 442-52. PMID 22103405 DOI: 10.1021/bi2011543  1
2012 Xin Q, Pfeiffer K, Prausnitz JM, Clark DS, Blanch HW. Extraction of lignins from aqueous-ionic liquid mixtures by organic solvents. Biotechnology and Bioengineering. 109: 346-52. PMID 22095406 DOI: 10.1002/bit.24337  1
2012 Glenzer SH, Spears BK, Edwards MJ, Alger ET, Berger RL, Bleuel DL, Bradley DK, Caggiano JA, Callahan DA, Castro C, Casey DT, Choate C, Clark DS, Cerjan CJ, Collins GW, et al. First implosion experiments with cryogenic thermonuclear fuel on the national ignition facility Plasma Physics and Controlled Fusion. 54. DOI: 10.1088/0741-3335/54/4/045013  0.44
2012 Padmanabhan S, Zaia E, Wu K, Blanch HW, Clark DS, Bell AT, Prausnitz JM. Delignification of Miscanthus by Extraction Separation Science and Technology. 47: 370-376. DOI: 10.1080/01496395.2011.629639  1
2012 Hicks DG, Meezan NB, Dewald EL, MacKinnon AJ, Olson RE, Callahan DA, Döppner T, Benedetti LR, Bradley DK, Celliers PM, Clark DS, Di Nicola P, Dixit SN, Dzenitis EG, Eggert JE, et al. Implosion dynamics measurements at the National Ignition Facility Physics of Plasmas. 19. DOI: 10.1063/1.4769268  0.44
2012 Glenzer SH, Callahan DA, MacKinnon AJ, Kline JL, Grim G, Alger ET, Berger RL, Bernstein LA, Betti R, Bleuel DL, Boehly TR, Bradley DK, Burkhart SC, Burr R, Caggiano JA, ... ... Clark DS, et al. Cryogenic thermonuclear fuel implosions on the National Ignition Facility Physics of Plasmas. 19. DOI: 10.1063/1.4719686  0.44
2012 Jones OS, Cerjan CJ, Marinak MM, Milovich JL, Robey HF, Springer PT, Benedetti LR, Bleuel DL, Bond EJ, Bradley DK, Callahan DA, Caggiano JA, Celliers PM, Clark DS, Dixit SM, et al. A high-resolution integrated model of the National Ignition Campaign cryogenic layered experiments Physics of Plasmas. 19. DOI: 10.1063/1.4718595  0.44
2012 Morales MA, Benedict LX, Clark DS, Schwegler E, Tamblyn I, Bonev SA, Correa AA, Haan SW. Ab initio calculations of the equation of state of hydrogen in a regime relevant for inertial fusion applications High Energy Density Physics. 8: 5-12. DOI: 10.1016/j.hedp.2011.09.002  0.44
2011 Bruns N, Clark DS. Self-Reporting Materials: Protein- Mediated Visual Indication of Damage in a Bulk Polymer. Chimia. 65: 245-249. PMID 28982404 DOI: 10.2533/chimia.2011.245  1
2011 Kim TW, Chokhawala HA, Hess M, Dana CM, Baer Z, Sczyrba A, Rubin EM, Blanch HW, Clark DS. High-throughput in vitro glycoside hydrolase (HIGH) screening for enzyme discovery. Angewandte Chemie (International Ed. in English). 50: 11215-8. PMID 21922616 DOI: 10.1002/anie.201104685  1
2011 Huffer S, Clark ME, Ning JC, Blanch HW, Clark DS. Role of alcohols in growth, lipid composition, and membrane fluidity of yeasts, bacteria, and archaea. Applied and Environmental Microbiology. 77: 6400-8. PMID 21784917 DOI: 10.1128/AEM.00694-11  1
2011 Traylor MJ, Ryan JD, Arnon ES, Dordick JS, Clark DS. Rapid and quantitative measurement of metabolic stability without chromatography or mass spectrometry. Journal of the American Chemical Society. 133: 14476-9. PMID 21766815 DOI: 10.1021/ja203172c  1
2011 Graham JE, Clark ME, Nadler DC, Huffer S, Chokhawala HA, Rowland SE, Blanch HW, Clark DS, Robb FT. Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment. Nature Communications. 2: 375. PMID 21730956 DOI: 10.1038/ncomms1373  1
2011 Levine SE, Fox JM, Clark DS, Blanch HW. A mechanistic model for rational design of optimal cellulase mixtures. Biotechnology and Bioengineering. 108: 2561-70. PMID 21702033 DOI: 10.1002/bit.23249  1
2011 Bruns N, Clark DS. Self-reporting materials: protein-mediated visual indication of damage in a bulk polymer. Chimia. 65: 245-9. PMID 21678771 DOI: 10.2533/chimia.2011.245  1
2011 Trinh CT, Li J, Blanch HW, Clark DS. Redesigning Escherichia coli metabolism for anaerobic production of isobutanol. Applied and Environmental Microbiology. 77: 4894-904. PMID 21642415 DOI: 10.1128/AEM.00382-11  1
2011 Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (New York, N.Y.). 331: 463-7. PMID 21273488 DOI: 10.1126/science.1200387  1
2011 Shill K, Padmanabhan S, Xin Q, Prausnitz JM, Clark DS, Blanch HW. Ionic liquid pretreatment of cellulosic biomass: enzymatic hydrolysis and ionic liquid recycle. Biotechnology and Bioengineering. 108: 511-20. PMID 21246505 DOI: 10.1002/bit.23014  1
2011 Traylor MJ, Chai J, Clark DS. Simultaneous measurement of CYP1A2 activity, regioselectivity, and coupling: Implications for environmental sensitivity of enzyme-substrate binding. Archives of Biochemistry and Biophysics. 505: 186-93. PMID 20933493 DOI: 10.1016/j.abb.2010.10.002  1
2011 Lindl JD, Atherton LJ, Amednt PA, Batha S, Bell P, Berger RL, Betti R, Bleuel DL, Boehly TR, Bradley DK, Braun DG, Callahan DA, Celliers PM, Cerjan CJ, Clark DS, et al. Progress towards ignition on the National Ignition Facility Nuclear Fusion. 51. DOI: 10.1088/0029-5515/51/9/094024  0.44
2011 Traylor MJ, Pavlovich MJ, Karim S, Hait P, Sakiyama Y, Clark DS, Graves DB. Long-term antibacterial efficacy of air plasma-activated water Journal of Physics D: Applied Physics. 44. DOI: 10.1088/0022-3727/44/47/472001  1
2011 Clark DS, Haan SW, Cook AW, Edwards MJ, Hammel BA, Koning JM, Marinak MM. Short-wavelength and three-dimensional instability evolution in National Ignition Facility ignition capsule designs Physics of Plasmas. 18. DOI: 10.1063/1.3609834  0.44
2011 Landen OL, Edwards J, Haan SW, Robey HF, Milovich J, Spears BK, Weber SV, Clark DS, Lindl JD, MacGowan BJ, Moses EI, Atherton J, Amendt PA, Boehly TR, Bradley DK, et al. Capsule implosion optimization during the indirect-drive National Ignition Campaign Physics of Plasmas. 18. DOI: 10.1063/1.3592170  0.44
2011 Haan SW, Lindl JD, Callahan DA, Clark DS, Salmonson JD, Hammel BA, Atherton LJ, Cook RC, Edwards MJ, Glenzer S, Hamza AV, Hatchett SP, Herrmann MC, Hinkel DE, Ho DD, et al. Point design targets, specifications, and requirements for the 2010 ignition campaign on the National Ignition Facility Physics of Plasmas. 18. DOI: 10.1063/1.3592169  0.44
2011 Hammel BA, Scott HA, Regan SP, Cerjan C, Clark DS, Edwards MJ, Epstein R, Glenzer SH, Haan SW, Izumi N, Koch JA, Kyrala GA, Landen OL, Langer SH, Peterson K, et al. Diagnosing and controlling mix in National Ignition Facility implosion experiments Physics of Plasmas. 18. DOI: 10.1063/1.3567520  0.44
2011 Wolski PW, Clark DS, Blanch HW. Green fluorescent protein as a screen for enzymatic activity in ionic liquid-aqueous systems for in situ hydrolysis of lignocellulose Green Chemistry. 13: 3107-3110. DOI: 10.1039/c1gc15691h  1
2011 Haan SW, Salmonson JD, Clark DS, Ho DD, Hammel BA, Callahan DA, Cerjan CJ, Edwards MJ, Hatchett SP, Landen OL, Lindl JD, MacGowan BJ, Marinak MM, Munro DH, Robey HF, et al. NIF ignition target requirements, margins, and uncertainties: Status february 2010 Fusion Science and Technology. 59: 1-7.  0.44
2010 Holder PG, Finley DT, Stephanopoulos N, Walton R, Clark DS, Francis MB. Dramatic thermal stability of virus-polymer conjugates in hydrophobic solvents. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 17383-8. PMID 20964388 DOI: 10.1021/la1039305  1
2010 Clark DS. Protein melts: A new phase for protein chemistry. Nature Chemistry. 2: 607-8. PMID 20651715 DOI: 10.1038/nchem.746  1
2010 Kim TW, Chokhawala HA, Nadler DC, Nadler D, Blanch HW, Clark DS. Binding modules alter the activity of chimeric cellulases: Effects of biomass pretreatment and enzyme source. Biotechnology and Bioengineering. 107: 601-11. PMID 20623472 DOI: 10.1002/bit.22856  1
2010 Trinh CT, Huffer S, Clark ME, Blanch HW, Clark DS. Elucidating mechanisms of solvent toxicity in ethanologenic Escherichia coli. Biotechnology and Bioengineering. 106: 721-30. PMID 20564611 DOI: 10.1002/bit.22743  1
2010 Levine SE, Fox JM, Blanch HW, Clark DS. A mechanistic model of the enzymatic hydrolysis of cellulose. Biotechnology and Bioengineering. 107: 37-51. PMID 20506540 DOI: 10.1002/bit.22789  1
2010 Lee MY, Dordick JS, Clark DS. Metabolic enzyme microarray coupled with miniaturized cell-culture array technology for high-throughput toxicity screening. Methods in Molecular Biology (Clifton, N.J.). 632: 221-37. PMID 20217581 DOI: 10.1007/978-1-60761-663-4_14  1
2010 Akbar U, Shin DS, Schneider E, Dordick JS, Clark DS. Two-Step Enzymatic Modification of Solid-Supported Bergenin in Aqueous and Organic Media. Tetrahedron Letters. 51: 1220. PMID 20174610 DOI: 10.1016/j.tetlet.2009.12.119  1
2010 Fernandes TG, Kwon SJ, Bale SS, Lee MY, Diogo MM, Clark DS, Cabral JM, Dordick JS. Three-dimensional cell culture microarray for high-throughput studies of stem cell fate. Biotechnology and Bioengineering. 106: 106-18. PMID 20069558 DOI: 10.1002/bit.22661  1
2010 Jones OS, Milovich JL, Callahan DA, Edwards MJ, Landen OL, Salmonson JD, Clark DS, Haan SW, Marinak MM, Patel MV, Langer SH, Sepke SM, Springer PT, Hatchett SP. 3D Simulations of the NIF indirect drive ignition target design Journal of Physics: Conference Series. 244. DOI: 10.1088/1742-6596/244/2/022077  0.44
2010 Shay HD, Clark DS, Amendt PA, Tabak M, Key MH, Marinak MM, Patel MV. Design considerations for a cone in a fast ignition capsule Journal of Physics: Conference Series. 244. DOI: 10.1088/1742-6596/244/2/022061  0.44
2010 Wilson DC, Spears BK, Hatchett SP, Cerjan CJ, Springer PT, Clark DS, Edwards MJ, Salmonson JD, Weber SV, Hammel BA, Grim GP, Herrmann HW, Wilke MD. The use of tritium rich capsules with 25-35% deuterium to achieve ignition at the National Ignition Facility Journal of Physics: Conference Series. 244. DOI: 10.1088/1742-6596/244/2/022015  0.44
2010 Clark DS, Haan SW, Hammel BA, Salmonson JD, Callahan DA, Town RPJ. Plastic ablator ignition capsule design for the National Ignition Facility Journal of Physics: Conference Series. 244. DOI: 10.1088/1742-6596/244/2/022010  0.44
2010 Wang TL, Clark DS, Strozzi DJ, Wilks SC, Martins SF, Kirkwood RK. Particle-in-cell simulations of kinetic effects in plasma-based backward Raman amplification in underdense plasmas Physics of Plasmas. 17. DOI: 10.1063/1.3298738  0.44
2010 Hammel BA, Haan SW, Clark DS, Edwards MJ, Langer SH, Marinak MM, Patel MV, Salmonson JD, Scott HA. High-mode Rayleigh-Taylor growth in NIF ignition capsules High Energy Density Physics. 6: 171-178. DOI: 10.1016/j.hedp.2009.12.005  0.44
2009 Whitehead TA, Bergeron LM, Clark DS. Tying up the loose ends: circular permutation decreases the proteolytic susceptibility of recombinant proteins. Protein Engineering, Design & Selection : Peds. 22: 607-13. PMID 19622546 DOI: 10.1093/protein/gzp034  1
2009 Sukumaran SM, Potsaid B, Lee MY, Clark DS, Dordick JS. Development of a fluorescence-based, ultra high-throughput screening platform for nanoliter-scale cytochrome p450 microarrays. Journal of Biomolecular Screening. 14: 668-78. PMID 19525490 DOI: 10.1177/1087057109336592  1
2009 Slocik JM, Kim SN, Whitehead TA, Clark DS, Naik RR. Biotemplated metal nanowires using hyperthermophilic protein filaments. Small (Weinheim An Der Bergstrasse, Germany). 5: 2038-42. PMID 19517487 DOI: 10.1002/smll.200900499  1
2009 Bruns N, Pustelny K, Bergeron LM, Whitehead TA, Clark DS. Mechanical nanosensor based on FRET within a thermosome: damage-reporting polymeric materials. Angewandte Chemie (International Ed. in English). 48: 5666-9. PMID 19402088 DOI: 10.1002/anie.200900554  1
2009 Fernandes TG, Diogo MM, Clark DS, Dordick JS, Cabral JM. High-throughput cellular microarray platforms: applications in drug discovery, toxicology and stem cell research. Trends in Biotechnology. 27: 342-9. PMID 19398140 DOI: 10.1016/j.tibtech.2009.02.009  1
2009 Hudson EP, Eppler RK, Beaudoin JM, Dordick JS, Reimer JA, Clark DS. Active-site motions and polarity enhance catalytic turnover of hydrated subtilisin dissolved in organic solvents. Journal of the American Chemical Society. 131: 4294-300. PMID 19317505 DOI: 10.1021/ja806996q  1
2009 Whitehead TA, Je E, Clark DS. Rational shape engineering of the filamentous protein gamma prefoldin through incremental gene truncation. Biopolymers. 91: 496-503. PMID 19189379 DOI: 10.1002/bip.21157  1
2009 Bergeron LM, Gomez L, Whitehead TA, Clark DS. Self-renaturing enzymes: design of an enzyme-chaperone chimera as a new approach to enzyme stabilization. Biotechnology and Bioengineering. 102: 1316-22. PMID 19170240 DOI: 10.1002/bit.22254  1
2009 Bergeron LM, Shis DL, Gomez L, Clark DS. Small molecule inhibition of a Group II chaperonin: pinpointing a loop region within the equatorial domain as necessary for protein refolding. Archives of Biochemistry and Biophysics. 481: 45-51. PMID 18976628 DOI: 10.1016/j.abb.2008.10.016  1
2009 Bergeron LM, Tokatlian T, Gomez L, Clark DS. Redirecting the inactivation pathway of penicillin amidase and increasing amoxicillin production via a thermophilic molecular chaperone. Biotechnology and Bioengineering. 102: 417-24. PMID 18846552 DOI: 10.1002/bit.22142  1
2009 Kumar RA, Papaïconomou N, Lee JM, Salminen J, Clark DS, Prausnitz JM. In vitro cytotoxicities of ionic liquids: effect of cation rings, functional groups, and anions. Environmental Toxicology. 24: 388-95. PMID 18825729 DOI: 10.1002/tox.20443  1
2009 Ping Y, Kirkwood RK, Wang TL, Clark DS, Wilks SC, Meezan N, Berger RL, Wurtele J, Fisch NJ, Malkin VM, Valeo EJ, Martins SF, Joshi C. Development of a nanosecond-laser-pumped Raman amplifier for short laser pulses in plasma Physics of Plasmas. 16. DOI: 10.1063/1.3276739  0.44
2008 Brooks SJ, Coulombel L, Ahuja D, Clark DS, Dordick JS. Expanding the Scope of Biocatalysis: Oxidative Biotransformations on Solid-Supported Substrates. Advanced Synthesis & Catalysis. 350: 1517-1525. PMID 21881621 DOI: 10.1002/adsc.200800188  1
2008 Eppler RK, Hudson EP, Chase SD, Dordick JS, Reimer JA, Clark DS. Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions. Proceedings of the National Academy of Sciences of the United States of America. 105: 15672-7. PMID 18840689 DOI: 10.1073/pnas.0804566105  1
2008 Ryan JD, Fish RH, Clark DS. Engineering cytochrome P450 enzymes for improved activity towards biomimetic 1,4-NADH cofactors. Chembiochem : a European Journal of Chemical Biology. 9: 2579-82. PMID 18816544 DOI: 10.1002/cbic.200800246  1
2008 Fernandes TG, Kwon SJ, Lee MY, Clark DS, Cabral JM, Dordick JS. On-chip, cell-based microarray immunofluorescence assay for high-throughput analysis of target proteins. Analytical Chemistry. 80: 6633-9. PMID 18656951 DOI: 10.1021/ac800848j  1
2008 Whitehead TA, Meadows AL, Clark DS. Controlling the self-assembly of a filamentous hyperthermophilic chaperone by an engineered capping protein. Small (Weinheim An Der Bergstrasse, Germany). 4: 956-60. PMID 18576281 DOI: 10.1002/smll.200700848  1
2008 Bergeron LM, Lee C, Clark DS. Identification of a critical chaperoning region on an archaeal recombinant thermosome. Biochemical and Biophysical Research Communications. 369: 707-11. PMID 18313393 DOI: 10.1016/j.bbrc.2008.02.103  1
2008 Meadows AL, Kong B, Berdichevsky M, Roy S, Rosiva R, Blanch HW, Clark DS. Metabolic and morphological differences between rapidly proliferating cancerous and normal breast epithelial cells. Biotechnology Progress. 24: 334-41. PMID 18307352 DOI: 10.1021/bp070301d  1
2008 Lee MY, Kumar RA, Sukumaran SM, Hogg MG, Clark DS, Dordick JS. Three-dimensional cellular microarray for high-throughput toxicology assays. Proceedings of the National Academy of Sciences of the United States of America. 105: 59-63. PMID 18160535 DOI: 10.1073/pnas.0708756105  1
2008 Bergeron LM, Lee C, Tokatlian T, Höllrigl V, Clark DS. Chaperone function in organic co-solvents: experimental characterization and modeling of a hyperthermophilic chaperone subunit from Methanocaldococcus jannaschii. Biochimica Et Biophysica Acta. 1784: 368-78. PMID 18154740 DOI: 10.1016/j.bbapap.2007.11.011  1
2008 Ryan JD, Clark DS. P450cam biocatalysis in surfactant-stabilized two-phase emulsions. Biotechnology and Bioengineering. 99: 1311-9. PMID 18098319 DOI: 10.1002/bit.21772  1
2008 Clark DS, Haan SW, Salmonson JD. Robustness studies of ignition targets for the National Ignition Facility in two dimensions Physics of Plasmas. 15. DOI: 10.1063/1.2890123  0.44
2008 Córdova J, Ryan JD, Boonyaratanakornkit BB, Clark DS. Esterase activity of bovine serum albumin up to 160 °C: A new benchmark for biocatalysis Enzyme and Microbial Technology. 42: 278-283. DOI: 10.1016/j.enzmictec.2007.10.007  1
2008 Asuri P, Lee MY, Ramasubramanian AK, Hogg M, Eker B, Butt S, Ryan J, Sukumaran S, Clark DS, Dordick JS. Microarray biochips for high-throughput drug screening Aiche Annual Meeting, Conference Proceedings 1
2008 Sukumaran S, Lee MY, Potsaid B, Clark DS, Dordick JS. Screening tools for the high-throughput analysis of CYP450-mediated drug metabolism and CYP450 inhibition Aiche Annual Meeting, Conference Proceedings 1
2007 Logan TC, Clark DS, Stachowiak TB, Svec F, Fréchet JM. Photopatterning enzymes on polymer monoliths in microfluidic devices for steady-state kinetic analysis and spatially separated multi-enzyme reactions. Analytical Chemistry. 79: 6592-8. PMID 17658765 DOI: 10.1021/ac070705k  1
2007 Meadows AL, Roy S, Clark DS, Blanch HW. Optimal design of metabolic flux analysis experiments for anchorage-dependent mammalian cells using a cellular automaton model. Biotechnology and Bioengineering. 98: 221-9. PMID 17657779 DOI: 10.1002/bit.21414  1
2007 Whitehead TA, Boonyaratanakornkit BB, Höllrigl V, Clark DS. A filamentous molecular chaperone of the prefoldin family from the deep-sea hyperthermophile Methanocaldococcus jannaschii. Protein Science : a Publication of the Protein Society. 16: 626-34. PMID 17384227 DOI: 10.1110/ps.062599907  1
2007 Boonyaratanakornkit BB, Miao LY, Clark DS. Transcriptional responses of the deep-sea hyperthermophile Methanocaldococcus jannaschii under shifting extremes of temperature and pressure. Extremophiles : Life Under Extreme Conditions. 11: 495-503. PMID 17332989 DOI: 10.1007/s00792-007-0063-4  1
2007 Akbar U, Aschenbrenner CD, Harper MR, Johnson HR, Dordick JS, Clark DS. Direct solubilization of enzyme aggregates with enhanced activity in nonaqueous media. Biotechnology and Bioengineering. 96: 1030-9. PMID 17171716 DOI: 10.1002/bit.21291  1
2007 Johnson HR, Hooker JM, Francis MB, Clark DS. Solubilization and stabilization of bacteriophage MS2 in organic solvents Biotechnology and Bioengineering. 97: 224-234. PMID 17099911 DOI: 10.1002/bit.21245  1
2007 Clark DS, Tabak M. A self-similar isochoric implosion for fast ignition Nuclear Fusion. 47: 1147-1156. DOI: 10.1088/0029-5515/47/9/011  0.44
2006 Boonyaratanakornkit B, Córdova J, Park CB, Clark DS. Pressure affects transcription profiles of Methanocaldococcus jannaschii despite the absence of barophilic growth under gas-transfer limitation. Environmental Microbiology. 8: 2031-5. PMID 17014501 DOI: 10.1111/j.1462-2920.2006.01083.x  1
2006 Forbes NS, Meadows AL, Clark DS, Blanch HW. Estradiol stimulates the biosynthetic pathways of breast cancer cells: detection by metabolic flux analysis. Metabolic Engineering. 8: 639-52. PMID 16904360 DOI: 10.1016/j.ymben.2006.06.005  1
2006 Eppler RK, Komor RS, Huynh J, Dordick JS, Reimer JA, Clark DS. Water dynamics and salt-activation of enzymes in organic media: mechanistic implications revealed by NMR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 103: 5706-10. PMID 16585507 DOI: 10.1073/pnas.0601113103  1
2006 Kumar RA, Clark DS. High-throughput screening of biocatalytic activity: applications in drug discovery. Current Opinion in Chemical Biology. 10: 162-8. PMID 16520085 DOI: 10.1016/j.cbpa.2006.02.033  1
2006 Park JB, Clark DS. Deactivation mechanisms of chloroperoxidase during biotransformations. Biotechnology and Bioengineering. 93: 1190-5. PMID 16425305 DOI: 10.1002/bit.20825  1
2006 Park JB, Clark DS. New reaction system for hydrocarbon oxidation by chloroperoxidase. Biotechnology and Bioengineering. 94: 189-92. PMID 16276530 DOI: 10.1002/bit.20769  1
2006 Robb FT, Shukla HD, Clark DS. 10 Heat Shock Proteins in Hyperthermophiles Methods in Microbiology. 35: 233-252. DOI: 10.1016/S0580-9517(08)70013-8  1
2006 Park CB, Boonyaratanakornkit BB, Clark DS. 5 Toward the Large Scale Cultivation of Hyperthermophiles at High-Temperature and High-Pressure Methods in Microbiology. 35: 109-126. DOI: 10.1016/S0580-9517(08)70008-4  1
2006 Lee MY, Clark DS, Dordick JS. Human P450 Microarrays for In Vitro Toxicity Analysis: Toward Complete Automation of Human Toxicology Screening Jala - Journal of the Association For Laboratory Automation. 11: 374-380. DOI: 10.1016/j.jala.2006.08.003  1
2005 Clark DS, Tabak M. Acceleration- and deceleration-phase nonlinear Rayleigh-Taylor growth at spherical interfaces. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 056308. PMID 16383746 DOI: 10.1103/PhysRevE.72.056308  0.44
2005 Hudson EP, Eppler RK, Clark DS. Biocatalysis in semi-aqueous and nearly anhydrous conditions. Current Opinion in Biotechnology. 16: 637-43. PMID 16256329 DOI: 10.1016/j.copbio.2005.10.004  1
2005 Clark DS, Tabak M. Nonlinear Rayleigh-Taylor growth in converging geometry. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 055302. PMID 16089591 DOI: 10.1103/PhysRevE.71.055302  0.44
2005 Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El-Sayed NM, Clark DS. Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non-lethal cold shock. Environmental Microbiology. 7: 789-97. PMID 15892698 DOI: 10.1111/j.1462-2920.2005.00751.x  1
2005 Lee MY, Park CB, Dordick JS, Clark DS. Metabolizing enzyme toxicology assay chip (MetaChip) for high-throughput microscale toxicity analyses. Proceedings of the National Academy of Sciences of the United States of America. 102: 983-7. PMID 15657119 DOI: 10.1073/pnas.0406755102  1
2004 Renninger N, Knopp R, Nitsche H, Clark DS, Keasling JD. Uranyl precipitation by Pseudomonas aeruginosa via controlled polyphosphate metabolism Applied and Environmental Microbiology. 70: 7404-7412. PMID 15574942 DOI: 10.1128/AEM.70.12.7404-7412.2004  1
2004 Gerber R, Ryan JD, Clark DS. Cell-based screen of HMG-CoA reductase inhibitors and expression regulators using LC-MS. Analytical Biochemistry. 329: 28-34. PMID 15136164 DOI: 10.1016/j.ab.2004.03.023  1
2004 Lindsay JP, Clark DS, Dordick JS. Combinatorial formulation of biocatalyst preparations for increased activity in organic solvents: salt activation of penicillin amidase. Biotechnology and Bioengineering. 85: 553-60. PMID 14760696 DOI: 10.1002/bit.20002  1
2003 Altreuter DH, Dordick JS, Clark DS. Solid-phase peptide synthesis by ion-paired alpha-chymotrypsin in nonaqueous media. Biotechnology and Bioengineering. 81: 809-17. PMID 12557314 DOI: 10.1002/bit.10536  1
2002 Clark DS, Bailey JE. Structure-function relationships in immobilized chymotrypsin catalysis. Biotechnology and Bioengineering. 79: 539-49. PMID 12209825 DOI: 10.1002/bit.10438  1
2002 Rich JO, Mozhaev VV, Dordick JS, Clark DS, Khmelnitsky YL. Molecular imprinting of enzymes with water-insoluble ligands for nonaqueous biocatalysis. Journal of the American Chemical Society. 124: 5254-5. PMID 11996551  1
2002 Boonyaratanakornkit BB, Park CB, Clark DS. Pressure effects on intra- and intermolecular interactions within proteins. Biochimica Et Biophysica Acta. 1595: 235-49. PMID 11983399 DOI: 10.1016/S0167-4838(01)00347-8  1
2002 Park CB, Clark DS. Rupture of the cell envelope by decompression of the deep-sea methanogen Methanococcus jannaschii. Applied and Environmental Microbiology. 68: 1458-63. PMID 11872502  1
2002 Park CB, Clark DS. Sol-gel encapsulated enzyme arrays for high-throughput screening of biocatalytic activity. Biotechnology and Bioengineering. 78: 229-35. PMID 11870613 DOI: 10.1002/bit.10238  1
2002 Altreuter DH, Dordick JS, Clark DS. Nonaqueous biocatalytic synthesis of new cytotoxic doxorubicin derivatives: exploiting unexpected differences in the regioselectivity of salt-activated and solubilized subtilisin. Journal of the American Chemical Society. 124: 1871-6. PMID 11866597 DOI: 10.1021/ja015977y  1
2001 Renninger N, McMahon KD, Knopp R, Nitsche H, Clark DS, Keasling JD. Uranyl precipitation by biomass from an enhanced biological phosphorus removal reactor. Biodegradation. 12: 401-10. PMID 12051646 DOI: 10.1023/A:1015018104682  1
2001 Ru MT, Wu KC, Lindsay JP, Dordick JS, Reimer JA, Clark DS. Towards more active biocatalysts in organic media: increasing the activity of salt-activated enzymes. Biotechnology and Bioengineering. 75: 187-96. PMID 11536141 DOI: 10.1002/bit.1178  1
2001 Sun MM, Caillot R, Mak G, Robb FT, Clark DS. Mechanism of pressure-induced thermostabilization of proteins: studies of glutamate dehydrogenases from the hyperthermophile Thermococcus litoralis. Protein Science : a Publication of the Protein Society. 10: 1750-7. PMID 11514665 DOI: 10.1110/ps.4001  1
2001 Sun MM, Clark DS. Pressure effects on activity and stability of hyperthermophilic enzymes. Methods in Enzymology. 334: 316-27. PMID 11398475  0.84
1999 Sun MM, Tolliday N, Vetriani C, Robb FT, Clark DS. Pressure-induced thermostabilization of glutamate dehydrogenase from the hyperthermophile Pyrococcus furiosus. Protein Science : a Publication of the Protein Society. 8: 1056-63. PMID 10338016 DOI: 10.1110/ps.8.5.1056  1
1999 Altreuter DH, Clark DS. Combinatorial biocatalysis: taking the lead from nature. Current Opinion in Biotechnology. 10: 130-6. PMID 10209140 DOI: 10.1016/S0958-1669(99)80022-6  1
1998 Mancuso A, Sharfstein ST, Fernandez EJ, Clark DS, Blanch HW. Effect of extracellular glutamine concentration on primary and secondary metabolism of a murine hybridoma: an in vivo 13C nuclear magnetic resonance study. Biotechnology and Bioengineering. 57: 172-86. PMID 10099192 DOI: 10.1002/(SICI)1097-0290(19980120)57:2<172::AID-BIT6>3.0.CO;2-K  1
1990 Fernandez EJ, Mancuso A, Murphy MK, Blanch HW, Clark DS. Nuclear magnetic resonance methods for observing the intracellular environment of mammalian cells. Annals of the New York Academy of Sciences. 589: 458-75. PMID 2357030 DOI: 10.1111/j.1749-6632.1990.tb24264.x  1
1990 Mancuso A, Fernandez EJ, Blanch HW, Clark DS. A nuclear magnetic resonance technique for determining hybridoma cell concentration in hollow fiber bioreactors. Bio/Technology (Nature Publishing Company). 8: 1282-5. PMID 1366962 DOI: 10.1038/nbt1290-1282  1
1989 Murphy MK, Fernandez EJ, Clark DS. A comparison of three radiofrequency coils for NMR studies of conductive samples Magnetic Resonance in Medicine. 12: 382-389. PMID 2628686 DOI: 10.1002/mrm.1910120311  1
1987 Bailey JE, Clark DS. Electron paramagnetic resonance studies of immobilized chymotrypsin. Methods in Enzymology. 135: 502-512. PMID 3600306  1
1987 Clark DS, Skerker PS, Fernandez EJ, Jagoda RB. SPECTROSCOPIC STUDIES OF STRUCTURE-FUNCTION RELATIONSHIPS IN FREE AND IMMOBILIZED ALCOHOL DEHYDROGENASE Annals of the New York Academy of Sciences. 506: 117-128. PMID 2829683  1
1985 Clark DS, Bailey JE, Do DD. A mathematical model for restricted diffusion effects on macromolecule impregnation in porous supports. Biotechnology and Bioengineering. 27: 208-13. PMID 18553658 DOI: 10.1002/bit.260270217  1
1984 Clark DS, Bailey JE. Deactivation kinetics of immobilized alpha-chymotrypsin subpopulations. Biotechnology and Bioengineering. 26: 1090-7. PMID 18553531 DOI: 10.1002/bit.260260912  1
1984 Dennis KE, Clark DS, Bailey JE, Cho YK, Park YH. Immobilization of enzymes in porous supports: Effects of support-enzyme solution contacting. Biotechnology and Bioengineering. 26: 892-900. PMID 18553474 DOI: 10.1002/bit.260260812  1
1984 Clark DS, Bailey JE. Characterization of heterogeneous immobilized enzyme subpopulations using EPR spectroscopy. Biotechnology and Bioengineering. 26: 231-8. PMID 18551731 DOI: 10.1002/bit.260260306  1
1984 Clark DS, Bailey JE. Deactivation of alpha-chymotrypsin and alpha-chymotrypsin-CNBr-Sepharose 4B conjugates in aliphatic alcohols. Biochimica Et Biophysica Acta. 788: 181-8. PMID 6743665  1
1984 Clark DS, Bailey JE. Kinetic and EPR spectroscopy studies of immobilized chymotrypsin deactivation. Annals of the New York Academy of Sciences. 434: 31-8. PMID 6098211  1
1983 Clark DS, Bailey JE. Structure-function relationships in immobilized chymotrypsin catalysis. Biotechnology and Bioengineering. 25: 1027-47. PMID 18548717 DOI: 10.1002/bit.260250412  1
1982 Do DD, Clark DS, Bailey JE. Modeling enzyme immobilization in porous solid supports. Biotechnology and Bioengineering. 24: 1527-46. PMID 18546454 DOI: 10.1002/bit.260240707  1
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