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Jack A. Dunkle, Ph.D. - Publications

Affiliations: 
Chemistry & Biochemistry The University of Alabama, Tuscaloosa, AL 
 2010 Molecular & Cell Biology University of California, Berkeley, Berkeley, CA, United States 
Area:
Molecular Basis for Protein Synthesis by the Ribosome
Website:
https://chemistry.ua.edu/faculty_profiles/jack-a-dunkle/
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20/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dunkle JA, Bruno MR, Frantom PA. Structural evidence for a latch mechanism regulating access to the active site of SufS-family cysteine desulfurases. Acta Crystallographica. Section D, Structural Biology. 76: 291-301. PMID 32133993 DOI: 10.1107/S2059798320000790  0.376
2019 Blahut M, Wise CE, Bruno MR, Dong G, Makris TM, Frantom PA, Dunkle JA, Outten FW. Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues. The Journal of Biological Chemistry. PMID 31248989 DOI: 10.2210/Pdb6O11/Pdb  0.334
2018 Dunkle JA, Bruno M, Outten FW, Frantom PA. Structural evidence for dimer-interface driven regulation of the type II cysteine desulfurase, SufS. Biochemistry. PMID 30571100 DOI: 10.2210/Pdb6Mrh/Pdb  0.372
2018 Hong S, Sunita S, Maehigashi T, Hoffer ED, Dunkle JA, Dunham CM. Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proceedings of the National Academy of Sciences of the United States of America. PMID 30262649 DOI: 10.2210/Pdb5Vpo/Pdb  0.731
2017 Walker FC, Chou-Zheng L, Dunkle JA, Hatoum-Aslan A. Molecular determinants for CRISPR RNA maturation in the Cas10-Csm complex and roles for non-Cas nucleases. Nucleic Acids Research. 45: 2112-2123. PMID 28204542 DOI: 10.1093/Nar/Gkw891  0.33
2017 Hong S, Sunita S, Schureck MA, Maehigashi T, Dunkle JA, Ruangprasert A, Meisner J, Hoffer ED, Dunham CM. Molecular mechanisms of translational control Acta Crystallographica Section a Foundations and Advances. 73: a431-a431. DOI: 10.1107/S0108767317095794  0.579
2015 Schureck MA, Dunkle JA, Maehigashi T, Miles SJ, Dunham CM. Defining the mRNA recognition signature of a bacterial toxin protein. Proceedings of the National Academy of Sciences of the United States of America. 112: 13862-7. PMID 26508639 DOI: 10.1073/Pnas.1512959112  0.766
2015 Dunkle JA, Dunham CM. Mechanisms of mRNA frame maintenance and its subversion during translation of the genetic code. Biochimie. 114: 90-6. PMID 25708857 DOI: 10.1016/J.Biochi.2015.02.007  0.708
2014 Fagan CE, Maehigashi T, Dunkle JA, Miles SJ, Dunham CM. Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna (New York, N.Y.). 20: 1944-54. PMID 25352689 DOI: 10.1261/Rna.046953.114  0.761
2014 Maehigashi T, Dunkle JA, Miles SJ, Dunham CM. Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proceedings of the National Academy of Sciences of the United States of America. 111: 12740-5. PMID 25128388 DOI: 10.1073/Pnas.1409436111  0.8
2014 Dunkle JA, Vinal K, Desai PM, Zelinskaya N, Savic M, West DM, Conn GL, Dunham CM. Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA. Proceedings of the National Academy of Sciences of the United States of America. 111: 6275-80. PMID 24717845 DOI: 10.1073/Pnas.1402789111  0.633
2013 Dunkle JA, Cate JH. An Introduction to the Structure and Function of the Ribosome. Ecosal Plus. 5. PMID 26442932 DOI: 10.1128/ecosal.2.5.2  0.676
2013 Fagan CE, Dunkle JA, Maehigashi T, Dang MN, Devaraj A, Miles SJ, Qin D, Fredrick K, Dunham CM. Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state. Proceedings of the National Academy of Sciences of the United States of America. 110: 9716-21. PMID 23630274 DOI: 10.1073/Pnas.1301585110  0.718
2012 McGinnis JL, Dunkle JA, Cate JH, Weeks KM. The mechanisms of RNA SHAPE chemistry. Journal of the American Chemical Society. 134: 6617-24. PMID 22475022 DOI: 10.1021/Ja2104075  0.627
2012 McGinnis JL, Dunkle JA, Cate JHD, Weeks KM. Correction to The Mechanisms of RNA SHAPE Chemistry Journal of the American Chemical Society. 134: 12319-12319. DOI: 10.1021/Ja306198S  0.328
2011 Dunkle JA, Wang L, Feldman MB, Pulk A, Chen VB, Kapral GJ, Noeske J, Richardson JS, Blanchard SC, Cate JH. Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science (New York, N.Y.). 332: 981-4. PMID 21596992 DOI: 10.1126/Science.1202692  0.709
2010 Dunkle JA, Xiong L, Mankin AS, Cate JH. Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proceedings of the National Academy of Sciences of the United States of America. 107: 17152-7. PMID 20876128 DOI: 10.1073/Pnas.1007988107  0.637
2010 Llano-Sotelo B, Dunkle J, Klepacki D, Zhang W, Fernandes P, Cate JH, Mankin AS. Binding and action of CEM-101, a new fluoroketolide antibiotic that inhibits protein synthesis. Antimicrobial Agents and Chemotherapy. 54: 4961-70. PMID 20855725 DOI: 10.1128/Aac.00860-10  0.646
2010 Dunkle JA, Cate JH. Ribosome structure and dynamics during translocation and termination. Annual Review of Biophysics. 39: 227-44. PMID 20192776 DOI: 10.1146/Annurev.Biophys.37.032807.125954  0.688
2009 Zhang W, Dunkle JA, Cate JH. Structures of the ribosome in intermediate states of ratcheting. Science (New York, N.Y.). 325: 1014-7. PMID 19696352 DOI: 10.1126/Science.1175275  0.699
Low-probability matches (unlikely to be authored by this person)
2019 Nasef M, Muffly MC, Beckman AB, Rowe SJ, Walker FC, Hatoum-Aslan A, Dunkle JA. Regulation of cyclic oligoadenylate synthesis by the S. epidermidis Cas10-Csm complex. Rna (New York, N.Y.). PMID 31076459 DOI: 10.1261/Rna.070417.119  0.292
2022 Sharkey RE, Herbert JB, McGaha DA, Nguyen V, Schoeffler AJ, Dunkle JA. Three critical regions of the erythromycin resistance methyltransferase, ErmE, are required for function supporting a model for the interaction of Erm family enzymes with substrate rRNA. Rna (New York, N.Y.). 28: 210-226. PMID 34795028 DOI: 10.1261/rna.078946.121  0.287
2023 Gogar RK, Carroll F, Conte JV, Nasef M, Dunkle JA, Frantom PA. The β-latch structural element of the SufS cysteine desulfurase mediates active site accessibility and SufE transpersulfurase positioning. The Journal of Biological Chemistry. 102966. PMID 36736428 DOI: 10.1016/j.jbc.2023.102966  0.228
2020 Rowe SJ, Mecaskey RJ, Nasef M, Talton RC, Sharkey RE, Halliday JC, Dunkle JA. Shared requirements for key residues in the antibiotic resistance enzymes ErmC and ErmE suggest a common mode of RNA recognition. The Journal of Biological Chemistry. PMID 33020182 DOI: 10.1074/jbc.RA120.014280  0.224
2020 Rowe SJ, Mecaskey RJ, Nasef M, Talton RC, Sharkey RE, Halliday JC, Dunkle JA. Shared requirements for key residues in the antibiotic resistance enzymes ErmC and ErmE suggest a common mode of RNA recognition. The Journal of Biological Chemistry. 295: 17476-17485. PMID 33453992 DOI: 10.1074/jbc.RA120.014280  0.222
2023 Paraan M, Nasef M, Chou-Zheng L, Khweis SA, Schoeffler AJ, Hatoum-Aslan A, Stagg SM, Dunkle JA. The structure of a Type III-A CRISPR-Cas effector complex reveals conserved and idiosyncratic contacts to target RNA and crRNA among Type III-A systems. Plos One. 18: e0287461. PMID 37352230 DOI: 10.1371/journal.pone.0287461  0.17
2016 Walker FC, Chou-Zheng L, Dunkle JA, Hatoum-Aslan A. Molecular determinants for CRISPR RNA maturation in the Cas10-Csm complex and roles for non-Cas nucleases. Nucleic Acids Research. PMID 27701071 DOI: 10.1093/nar/gkw891  0.155
2022 Nasef M, Khweis SA, Dunkle JA. The effect of crRNA-target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system. Rna Biology. 19: 1293-1304. PMID 36424814 DOI: 10.1080/15476286.2022.2150812  0.125
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