| Year |
Citation |
Score |
| 2023 |
Herzberg O, Moult J. More than just pattern recognition: Prediction of uncommon protein structure features by AI methods. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221745120. PMID 37399411 DOI: 10.1073/pnas.2221745120 |
0.317 |
|
| 2022 |
Chao KL, Shang X, Greenfield J, Linden SB, Alreja AB, Nelson DC, Herzberg O. Structure of Escherichia coli O157:H7 bacteriophage CBA120 tailspike protein 4 baseplate anchor and tailspike assembly domains (TSP4-N). Scientific Reports. 12: 2061. PMID 35136138 DOI: 10.1038/s41598-022-06073-2 |
0.305 |
|
| 2020 |
Greenfield J, Shang X, Luo H, Zhou Y, Linden SB, Heselpoth RD, Leiman PG, Nelson DC, Herzberg O. Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7. Scientific Reports. 10: 15402. PMID 32958885 DOI: 10.1038/S41598-020-72373-0 |
0.434 |
|
| 2019 |
Greenfield J, Shang X, Luo H, Zhou Y, Heselpoth RD, Nelson DC, Herzberg O. Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3). Scientific Reports. 9: 7349. PMID 31089181 DOI: 10.1038/S41598-019-43748-9 |
0.471 |
|
| 2014 |
Chen C, Bales P, Greenfield J, Heselpoth RD, Nelson DC, Herzberg O. Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein. Plos One. 9: e93156. PMID 24671238 DOI: 10.1371/Journal.Pone.0093156 |
0.414 |
|
| 2014 |
Kryshtafovych A, Moult J, Bales P, Bazan JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R, Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, et al. Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins. 82: 26-42. PMID 24318984 DOI: 10.1002/Prot.24489 |
0.401 |
|
| 2013 |
Lim K, Kulakova L, Galkin A, Herzberg O. Crystal structures of carbamate kinase from Giardia lamblia bound with citric acid and AMP-PNP. Plos One. 8: e64004. PMID 23700444 DOI: 10.1371/journal.pone.0064004 |
0.459 |
|
| 2012 |
Chen CZ, Southall N, Galkin A, Lim K, Marugan JJ, Kulakova L, Shinn P, van Leer D, Zheng W, Herzberg O. A homogenous luminescence assay reveals novel inhibitors for giardia lamblia carbamate kinase. Current Chemical Genomics. 6: 93-102. PMID 23400734 DOI: 10.2174/1875397301206010093 |
0.318 |
|
| 2012 |
Zhao H, Lim K, Choudry A, Latham JA, Pathak MC, Dominguez D, Luo L, Herzberg O, Dunaway-Mariano D. Correlation of structure and function in the human hotdog-fold enzyme hTHEM4. Biochemistry. 51: 6490-2. PMID 22871024 DOI: 10.1021/Bi300968N |
0.469 |
|
| 2012 |
Chen C, Gorlatova N, Herzberg O. Pliable DNA conformation of response elements bound to transcription factor p63. The Journal of Biological Chemistry. 287: 7477-86. PMID 22247550 DOI: 10.1074/Jbc.M111.315820 |
0.33 |
|
| 2011 |
Chen C, Gorlatova N, Kelman Z, Herzberg O. Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements. Proceedings of the National Academy of Sciences of the United States of America. 108: 6456-61. PMID 21464285 DOI: 10.1073/Pnas.1013657108 |
0.377 |
|
| 2011 |
Li Z, Liu Z, Cho DW, Zou J, Gong M, Breece RM, Galkin A, Li L, Zhao H, Maestas GD, Tierney DL, Herzberg O, Dunaway-Mariano D, Mariano PS. Rational design, synthesis and evaluation of first generation inhibitors of the Giardia lamblia fructose-1,6-biphosphate aldolase. Journal of Inorganic Biochemistry. 105: 509-17. PMID 21333622 DOI: 10.1016/J.Jinorgbio.2010.12.012 |
0.445 |
|
| 2010 |
Chen C, Sun Q, Narayanan B, Nuss DL, Herzberg O. Structure of oxalacetate acetylhydrolase, a virulence factor of the chestnut blight fungus. The Journal of Biological Chemistry. 285: 26685-96. PMID 20558740 DOI: 10.1074/Jbc.M110.117804 |
0.731 |
|
| 2010 |
Galkin A, Kulakova L, Wu R, Nash TE, Dunaway-Mariano D, Herzberg O. X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 386-90. PMID 20383005 DOI: 10.1107/S1744309110004665 |
0.496 |
|
| 2010 |
Lim K, Pullalarevu S, Surabian KT, Howard A, Suzuki T, Moult J, Herzberg O. Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member Biochemistry. 49: 2031-2041. PMID 20121101 DOI: 10.1021/Bi9020988 |
0.487 |
|
| 2009 |
Li Z, Kulakova L, Li L, Galkin A, Zhao Z, Nash TE, Mariano PS, Herzberg O, Dunaway-Mariano D. Mechanisms of catalysis and inhibition operative in the arginine deiminase from the human pathogen Giardia lamblia. Bioorganic Chemistry. 37: 149-61. PMID 19640561 DOI: 10.1016/J.Bioorg.2009.06.001 |
0.409 |
|
| 2009 |
Galkin A, Kulakova L, Wu R, Gong M, Dunaway-Mariano D, Herzberg O. X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia. Proteins. 76: 1049-53. PMID 19507245 DOI: 10.1002/Prot.22469 |
0.453 |
|
| 2009 |
Galkin A, Li Z, Li L, Kulakova L, Pal LR, Dunaway-Mariano D, Herzberg O. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase. Biochemistry. 48: 3186-96. PMID 19236002 DOI: 10.1021/Bi9001166 |
0.557 |
|
| 2009 |
Narayanan B, Niu W, Joosten HJ, Li Z, Kuipers RK, Schaap PJ, Dunaway-Mariano D, Herzberg O. Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. Journal of Molecular Biology. 386: 486-503. PMID 19133276 DOI: 10.1016/J.Jmb.2008.12.037 |
0.727 |
|
| 2008 |
Chao KL, Lim K, Lehmann C, Doseeva V, Howard AJ, Schwarz FP, Herzberg O. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Proteins. 72: 506-9. PMID 18393394 DOI: 10.1002/Prot.22046 |
0.435 |
|
| 2008 |
Willis MA, Zhuang Z, Song F, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciA from Haemophilus influenzae (HI0827), a hexameric broad specificity acyl-coenzyme A thioesterase. Biochemistry. 47: 2797-805. PMID 18260643 DOI: 10.1021/Bi702336D |
0.574 |
|
| 2008 |
Zhuang Z, Song F, Zhao H, Li L, Cao J, Eisenstein E, Herzberg O, Dunaway-Mariano D. Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA. Biochemistry. 47: 2789-96. PMID 18247525 DOI: 10.1021/Bi702334H |
0.501 |
|
| 2008 |
Li L, Li Z, Chen D, Lu X, Feng X, Wright EC, Solberg NO, Dunaway-Mariano D, Mariano PS, Galkin A, Kulakova L, Herzberg O, Green-Church KB, Zhang L. Inactivation of microbial arginine deiminases by L-canavanine. Journal of the American Chemical Society. 130: 1918-31. PMID 18205354 DOI: 10.1021/Ja0760877 |
0.333 |
|
| 2008 |
Narayanan BC, Niu W, Han Y, Zou J, Mariano PS, Dunaway-Mariano D, Herzberg O. Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily. Biochemistry. 47: 167-82. PMID 18081320 DOI: 10.1021/Bi701954P |
0.724 |
|
| 2008 |
Ramprakash J, Doseeva V, Galkin A, Krajewski W, Muthukumar L, Pullalarevu S, Demirkan E, Herzberg O, Moult J, Schwarz FP. Comparison of the chemical and thermal denaturation of proteins by a two-state transition model Analytical Biochemistry. 374: 221-230. PMID 17964274 DOI: 10.1016/J.Ab.2007.10.005 |
0.347 |
|
| 2007 |
Lim K, Read RJ, Chen CC, Tempczyk A, Wei M, Ye D, Wu C, Dunaway-Mariano D, Herzberg O. Swiveling domain mechanism in pyruvate phosphate dikinase. Biochemistry. 46: 14845-53. PMID 18052212 DOI: 10.1021/Bi701848W |
0.412 |
|
| 2007 |
Chao KL, Muthukumar L, Herzberg O. Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis. Biochemistry. 46: 6911-20. PMID 17503783 DOI: 10.1021/Bi700382G |
0.435 |
|
| 2007 |
Sari N, He Y, Doseeva V, Surabian K, Ramprakash J, Schwarz F, Herzberg O, Orban J. Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae. Protein Science : a Publication of the Protein Society. 16: 977-82. PMID 17400915 DOI: 10.1110/Ps.072820907 |
0.476 |
|
| 2007 |
Galkin A, Kulakova L, Melamud E, Li L, Wu C, Mariano P, Dunaway-Mariano D, Nash TE, Herzberg O. Characterization, kinetics, and crystal structures of fructose-1,6-bisphosphate aldolase from the human parasite, Giardia lamblia. The Journal of Biological Chemistry. 282: 4859-67. PMID 17166851 DOI: 10.1074/Jbc.M609534200 |
0.552 |
|
| 2006 |
Teplyakov A, Lim K, Zhu PP, Kapadia G, Chen CC, Schwartz J, Howard A, Reddy PT, Peterkofsky A, Herzberg O. Structure of phosphorylated enzyme I, the phosphoenolpyruvate:sugar phosphotransferase system sugar translocation signal protein. Proceedings of the National Academy of Sciences of the United States of America. 103: 16218-23. PMID 17053069 DOI: 10.1073/pnas.0607587103 |
0.387 |
|
| 2006 |
Chen CC, Han Y, Niu W, Kulakova AN, Howard A, Quinn JP, Dunaway-Mariano D, Herzberg O. Structure and kinetics of phosphonopyruvate hydrolase from Variovorax sp. Pal2: new insight into the divergence of catalysis within the PEP mutase/isocitrate lyase superfamily. Biochemistry. 45: 11491-504. PMID 16981709 DOI: 10.1021/Bi061208L |
0.576 |
|
| 2006 |
Lu X, Li L, Wu R, Feng X, Li Z, Yang H, Wang C, Guo H, Galkin A, Herzberg O, Mariano PS, Martin BM, Dunaway-Mariano D. Kinetic analysis of Pseudomonas aeruginosa arginine deiminase mutants and alternate substrates provides insight into structural determinants of function. Biochemistry. 45: 1162-72. PMID 16430212 DOI: 10.1021/Bi051591E |
0.554 |
|
| 2005 |
Teplyakov A, Liu S, Lu Z, Howard A, Dunaway-Mariano D, Herzberg O. Crystal structure of the petal death protein from carnation flower. Biochemistry. 44: 16377-84. PMID 16342930 DOI: 10.1021/Bi051779Y |
0.583 |
|
| 2005 |
Lu Z, Feng X, Song L, Han Y, Kim A, Herzberg O, Woodson WR, Martin BM, Mariano PS, Dunaway-Mariano D. Diversity of function in the isocitrate lyase enzyme superfamily: the Dianthus caryophyllus petal death protein cleaves alpha-keto and alpha-hydroxycarboxylic acids. Biochemistry. 44: 16365-76. PMID 16342929 DOI: 10.1021/Bi051776L |
0.454 |
|
| 2005 |
Sari N, Yeh DC, Doseeva V, Surabian K, Herzberg O, Orban J. NMR assignment of HI1506, a novel two-domain protein from Haemophilus influenzae. Journal of Biomolecular Nmr. 33: 281. PMID 16341755 DOI: 10.1007/S10858-005-3869-3 |
0.312 |
|
| 2005 |
Galkin A, Lu X, Dunaway-Mariano D, Herzberg O. Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase. The Journal of Biological Chemistry. 280: 34080-7. PMID 16091358 DOI: 10.1074/Jbc.M505471200 |
0.522 |
|
| 2005 |
Lehmann C, Pullalarevu S, Krajewski W, Willis MA, Galkin A, Howard A, Herzberg O. Structure of HI0073 from Haemophilus influenzae, the nucleotide-binding domain of a two-protein nucleotidyl transferase. Proteins. 60: 807-11. PMID 16028221 DOI: 10.1002/Prot.20586 |
0.404 |
|
| 2005 |
Willis MA, Song F, Zhuang Z, Krajewski W, Chalamasetty VR, Reddy P, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like alpha/beta-fold with a histidine/aspartate centered catalytic site. Proteins. 59: 648-52. PMID 15779043 DOI: 10.1002/Prot.20411 |
0.422 |
|
| 2005 |
Liu S, Lu Z, Han Y, Melamud E, Dunaway-Mariano D, Herzberg O. Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution. Biochemistry. 44: 2949-62. PMID 15723538 DOI: 10.1021/Bi0479712 |
0.576 |
|
| 2005 |
Lim K, Doseeva V, Demirkan ES, Pullalarevu S, Krajewski W, Galkin A, Howard A, Herzberg O. Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation. Proteins. 58: 759-63. PMID 15593094 DOI: 10.1002/Prot.20337 |
0.427 |
|
| 2004 |
Teplyakov A, Obmolova G, Sarikaya E, Pullalarevu S, Krajewski W, Galkin A, Howard AJ, Herzberg O, Gilliland GL. Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism. Journal of Bacteriology. 186: 7134-40. PMID 15489424 DOI: 10.1128/JB.186.21.7134-7140.2004 |
0.378 |
|
| 2004 |
Galkin A, Sarikaya E, Lehmann C, Howard A, Herzberg O. X-ray structure of HI0817 from Haemophilus influenzae: protein of unknown function with a novel fold. Proteins. 57: 874-7. PMID 15317022 DOI: 10.1002/Prot.20260 |
0.367 |
|
| 2004 |
Lim K, Sarikaya E, Galkin A, Krajewski W, Pullalarevu S, Shin JH, Kelman Z, Howard A, Herzberg O. Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues. Proteins. 56: 564-71. PMID 15229888 DOI: 10.1002/Prot.20148 |
0.474 |
|
| 2004 |
Lehmann C, Doseeva V, Pullalarevu S, Krajewski W, Howard A, Herzberg O. YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays. Proteins. 56: 376-83. PMID 15211520 DOI: 10.1002/Prot.20103 |
0.516 |
|
| 2004 |
Lu X, Galkin A, Herzberg O, Dunaway-Mariano D. Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis. Journal of the American Chemical Society. 126: 5374-5. PMID 15113205 DOI: 10.1021/Ja049543P |
0.44 |
|
| 2004 |
Teplyakov A, Pullalarevu S, Obmolova G, Doseeva V, Galkin A, Herzberg O, Dauter M, Dauter Z, Gilliland GL. Crystal structure of the YffB protein from Pseudomonas aeruginosa suggests a glutathione-dependent thiol reductase function. Bmc Structural Biology. 4: 5. PMID 15102337 DOI: 10.1186/1472-6807-4-5 |
0.366 |
|
| 2004 |
Liu S, Lu Z, Han Y, Jia Y, Howard A, Dunaway-Mariano D, Herzberg O. Conformational flexibility of PEP mutase. Biochemistry. 43: 4447-53. PMID 15078090 DOI: 10.1021/Bi036255H |
0.497 |
|
| 2004 |
Galkin A, Kulakova L, Sarikaya E, Lim K, Howard A, Herzberg O. Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target. The Journal of Biological Chemistry. 279: 14001-8. PMID 14701825 DOI: 10.1074/Jbc.M313410200 |
0.542 |
|
| 2003 |
Lim K, Zhang H, Tempczyk A, Krajewski W, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O. Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot. Proteins. 51: 56-67. PMID 12596263 DOI: 10.1002/Prot.10323 |
0.513 |
|
| 2003 |
Lim K, Tempczyk A, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O. A catalytic mechanism for D-Tyr-tRNATyr deacylase based on the crystal structure of Hemophilus influenzae HI0670. The Journal of Biological Chemistry. 278: 13496-502. PMID 12571243 DOI: 10.1074/jbc.M213150200 |
0.386 |
|
| 2003 |
Lim K, Tempczyk A, Parsons JF, Bonander N, Toedt J, Kelman Z, Howard A, Eisenstein E, Herzberg O. Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR. Proteins. 50: 375-9. PMID 12486730 DOI: 10.1002/Prot.10297 |
0.363 |
|
| 2003 |
Lehmann C, Lim K, Chalamasetty VR, Krajewski W, Melamud E, Galkin A, Howard A, Kelman Z, Reddy PT, Murzin AG, Herzberg O. The HI0073/HI0074 protein pair from Haemophilus influenzae is a member of a new nucleotidyltransferase family: structure, sequence analyses, and solution studies. Proteins. 50: 249-60. PMID 12486719 DOI: 10.1002/Prot.10260 |
0.476 |
|
| 2002 |
Gilliland GL, Teplyakov A, Obmolova G, Tordova M, Thanki N, Ladner J, Herzberg O, Lim K, Zhang H, Huang K, Li Z, Tempczyk A, Krajewski W, Parsons L, Yeh DC, et al. Assisting functional assignment for hypothetical Heamophilus influenzae gene products through structural genomics Current Drug Targets - Infectious Disorders. 2: 339-353. PMID 12570740 DOI: 10.2174/1568005023342281 |
0.417 |
|
| 2002 |
Chen CC, Zhang H, Kim AD, Howard A, Sheldrick GM, Mariano-Dunaway D, Herzberg O. Degradation pathway of the phosphonate ciliatine: crystal structure of 2-aminoethylphosphonate transaminase. Biochemistry. 41: 13162-9. PMID 12403617 DOI: 10.1021/Bi026231V |
0.557 |
|
| 2002 |
Willis MA, Krajewski W, Chalamasetty VR, Reddy P, Howard A, Herzberg O. Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae. Proteins. 49: 423-6. PMID 12360533 DOI: 10.1002/Prot.10225 |
0.345 |
|
| 2002 |
Lehmann C, Lim K, Toedt J, Krajewski W, Howard A, Eisenstein E, Herzberg O. Structure of 2C-methyl-D-erythrol-2,4-cyclodiphosphate synthase from Haemophilus influenzae: activation by conformational transition. Proteins. 49: 135-8. PMID 12211023 DOI: 10.1002/Prot.10182 |
0.344 |
|
| 2002 |
Liu S, Lu Z, Jia Y, Dunaway-Mariano D, Herzberg O. Dissociative phosphoryl transfer in PEP mutase catalysis: structure of the enzyme/sulfopyruvate complex and kinetic properties of mutants. Biochemistry. 41: 10270-6. PMID 12162742 DOI: 10.1021/Bi026024V |
0.485 |
|
| 2002 |
Parsons JF, Lim K, Tempczyk A, Krajewski W, Eisenstein E, Herzberg O. From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase. Proteins. 46: 393-404. PMID 11835514 DOI: 10.1002/Prot.10057 |
0.499 |
|
| 2002 |
Herzberg O, Chen CC, Liu S, Tempczyk A, Howard A, Wei M, Ye D, Dunaway-Mariano D. Pyruvate site of pyruvate phosphate dikinase: crystal structure of the enzyme-phosphonopyruvate complex, and mutant analysis. Biochemistry. 41: 780-7. PMID 11790099 DOI: 10.1021/Bi011799+ |
0.573 |
|
| 2001 |
Lim K, Zhang H, Tempczyk A, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O. Crystal structure of YecO from Haemophilus influenzae (HI0319) reveals a methyltransferase fold and a bound S-adenosylhomocysteine. Proteins. 45: 397-407. PMID 11746687 DOI: 10.1002/Prot.10004 |
0.573 |
|
| 2001 |
Ye D, Wei M, McGuire M, Huang K, Kapadia G, Herzberg O, Martin BM, Dunaway-Mariano D. Investigation of the catalytic site within the ATP-grasp domain of Clostridium symbiosum pyruvate phosphate dikinase. The Journal of Biological Chemistry. 276: 37630-9. PMID 11468288 DOI: 10.1074/Jbc.M105631200 |
0.494 |
|
| 2001 |
Chen CC, Herzberg O. Structures of the acyl-enzyme complexes of the Staphylococcus aureus beta-lactamase mutant Glu166Asp:Asn170Gln with benzylpenicillin and cephaloridine. Biochemistry. 40: 2351-8. PMID 11327855 DOI: 10.1021/Bi002277H |
0.413 |
|
| 2000 |
Wei M, Li Z, Ye D, Herzberg O, Dunaway-Mariano D. Identification of domain-domain docking sites within Clostridium symbiosum pyruvate phosphate dikinase by amino acid replacement. The Journal of Biological Chemistry. 275: 41156-65. PMID 10995759 DOI: 10.1074/Jbc.M006149200 |
0.349 |
|
| 2000 |
Zhang H, Huang K, Li Z, Banerjei L, Fisher KE, Grishin NV, Eisenstein E, Herzberg O. Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications. Proteins. 40: 86-97. PMID 10813833 DOI: 10.1002/(Sici)1097-0134(20000701)40:1<86::Aid-Prot100>3.0.Co;2-Y |
0.535 |
|
| 2000 |
Eisenstein E, Gilliland GL, Herzberg O, Moult J, Orban J, Poljak RJ, Banerjei L, Richardson D, Howard AJ. Biological function made crystal clear - Annotation of hypothetical proteins via structural genomics Current Opinion in Biotechnology. 11: 25-30. PMID 10679350 DOI: 10.1016/S0958-1669(99)00063-4 |
0.313 |
|
| 1999 |
Jia Y, Lu Z, Huang K, Herzberg O, Dunaway-Mariano D. Insight into the mechanism of phosphoenolpyruvate mutase catalysis derived from site-directed mutagenesis studies of active site residues. Biochemistry. 38: 14165-73. PMID 10571990 DOI: 10.1021/Bi990771J |
0.436 |
|
| 1999 |
Chen CC, Herzberg O. Relocation of the catalytic carboxylate group in class A beta-lactamase: the structure and function of the mutant enzyme Glu166-->Gln:Asn170-->Asp. Protein Engineering. 12: 573-9. PMID 10436083 DOI: 10.1093/Protein/12.7.573 |
0.514 |
|
| 1999 |
Huang K, Li Z, Jia Y, Dunaway-Mariano D, Herzberg O. Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate. Structure (London, England : 1993). 7: 539-48. PMID 10378273 DOI: 10.1016/S0969-2126(99)80070-7 |
0.417 |
|
| 1999 |
Li Z, Rasmussen BA, Herzberg O. Structural consequences of the active site substitution Cys181 ==> Ser in metallo-beta-lactamase from Bacteroides fragilis. Protein Science : a Publication of the Protein Society. 8: 249-52. PMID 10210203 DOI: 10.1110/Ps.8.1.249 |
0.487 |
|
| 1998 |
McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D. Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase. Biochemistry. 37: 13463-74. PMID 9753432 DOI: 10.1021/Bi980920I |
0.432 |
|
| 1998 |
Zhu PP, Herzberg O, Peterkofsky A. Topography of the interaction of HPr(Ser) kinase with HPr. Biochemistry. 37: 11762-70. PMID 9718298 DOI: 10.1021/Bi980455P |
0.323 |
|
| 1998 |
Huang K, Kapadia G, Zhu PP, Peterkofsky A, Herzberg O. A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum. Structure (London, England : 1993). 6: 697-710. PMID 9705652 DOI: 10.1016/S0969-2126(98)00072-0 |
0.479 |
|
| 1998 |
Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O. Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. Biochemistry. 37: 3286-96. PMID 9521648 DOI: 10.1021/Bi972127F |
0.518 |
|
| 1998 |
Pieper U, Kapadia G, Mevarech M, Herzberg O. Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii. Structure (London, England : 1993). 6: 75-88. PMID 9493269 DOI: 10.1016/S0969-2126(98)00009-4 |
0.499 |
|
| 1997 |
Concha NO, Rasmussen BA, Bush K, Herzberg O. Crystal structures of the cadmium- and mercury-substituted metallo-beta-lactamase from Bacteroides fragilis. Protein Science : a Publication of the Protein Society. 6: 2671-6. PMID 9416622 DOI: 10.1002/Pro.5560061225 |
0.468 |
|
| 1997 |
Banerjee S, Shigematsu N, Pannell LK, Ruvinov S, Orban J, Schwarz F, Herzberg O. Probing the non-proline cis peptide bond in beta-lactamase from Staphylococcus aureus PC1 by the replacement Asn136 --> Ala. Biochemistry. 36: 10857-66. PMID 9283075 DOI: 10.1021/Bi970352R |
0.46 |
|
| 1997 |
Pieper U, Hayakawa K, Li Z, Herzberg O. Circularly permuted beta-lactamase from Staphylococcus aureus PC1. Biochemistry. 36: 8767-74. PMID 9220963 DOI: 10.1021/Bi9705117 |
0.463 |
|
| 1996 |
Zawadzke LE, Chen CCH, Banerjee S, Li Z, Wäsch S, Kapadia G, Moult J, Herzberg O. Elimination of the hydrolytic water molecule in a class A β-lactamase mutant: Crystal structure and kinetics Biochemistry. 35: 16475-16482. PMID 8987980 DOI: 10.1021/Bi962242A |
0.501 |
|
| 1996 |
Chen CC, Smith TJ, Kapadia G, Wäsch S, Zawadzke LE, Coulson A, Herzberg O. Structure and kinetics of the beta-lactamase mutants S70A and K73H from Staphylococcus aureus PC1. Biochemistry. 35: 12251-8. PMID 8823158 DOI: 10.1021/Bi961153V |
0.513 |
|
| 1996 |
Concha NO, Rasmussen BA, Bush K, Herzberg O. Crystal structure of the wide-spectrum binuclear zinc beta-lactamase from Bacteroides fragilis. Structure (London, England : 1993). 4: 823-36. PMID 8805566 DOI: 10.1016/S0969-2126(96)00089-5 |
0.341 |
|
| 1996 |
McGuire M, Carroll LJ, Yankie L, Thrall SH, Dunaway-Mariano D, Herzberg O, Jayaram B, Haley BH. Determination of the nucleotide binding site within Clostridium symbiosum pyruvate phosphate dikinase by photoaffinity labeling, site-directed mutagenesis, and structural analysis. Biochemistry. 35: 8544-52. PMID 8679615 DOI: 10.1021/Bi960275K |
0.427 |
|
| 1996 |
Herzberg O, Chen CC, Kapadia G, McGuire M, Carroll LJ, Noh SJ, Dunaway-Mariano D. Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites. Proceedings of the National Academy of Sciences of the United States of America. 93: 2652-7. PMID 8610096 DOI: 10.1073/Pnas.93.7.2652 |
0.485 |
|
| 1996 |
Huang K, Kapadia G, Zhu P-, Peterkofsky A, Herzberg O. Crystal structure of enzyme IIA of the mycoplasma phosphotransferase system Acta Crystallographica Section A. 52: 108-108. DOI: 10.1107/S0108767396094822 |
0.469 |
|
| 1996 |
Pieper U, Kapadia G, Mevarech M, Herzberg O. Adaptation to extreme salt environment: the structure of dihydrofolate reductase from Haloferax volcanii Acta Crystallographica Section A. 52: 116-116. DOI: 10.1107/S0108767396094500 |
0.342 |
|
| 1996 |
Concha NO, Rasmussen BA, Bush K, Herzberg O. Crystal structure of the wide-spectrum binuclear zinc β-lactamase from Bacteroides fragilis Acta Crystallographica Section A. 52: 132-132. DOI: 10.1107/S0108767396093944 |
0.372 |
|
| 1995 |
Zawadzke LE, Smith TJ, Herzberg O. An engineered Staphylococcus aureus PC1 beta-lactamase that hydrolyses third-generation cephalosporins. Protein Engineering. 8: 1275-85. PMID 8869640 DOI: 10.1093/Protein/8.12.1275 |
0.45 |
|
| 1995 |
Pieper U, Kapadia G, Zhu PP, Peterkofsky A, Herzberg O. Structural evidence for the evolutionary divergence of mycoplasma from gram-positive bacteria: the histidine-containing phosphocarrier protein. Structure (London, England : 1993). 3: 781-90. PMID 7582895 DOI: 10.1016/S0969-2126(01)00213-1 |
0.477 |
|
| 1994 |
Liao DI, Kapadia G, Ahmed H, Vasta GR, Herzberg O. Structure of S-lectin, a developmentally regulated vertebrate beta-galactoside-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 91: 1428-32. PMID 8108426 DOI: 10.1073/Pnas.91.4.1428 |
0.456 |
|
| 1994 |
Bourne Y, Bolgiano B, Liao DI, Strecker G, Cantau P, Herzberg O, Feizi T, Cambillau C. Crosslinking of mammalian lectin (galectin-1) by complex biantennary saccharides. Nature Structural Biology. 1: 863-70. PMID 7773775 DOI: 10.1038/Nsb1294-863 |
0.388 |
|
| 1994 |
Herzberg O, Klevit R. Unraveling a bacterial hexose transport pathway. Current Opinion in Structural Biology. 4: 814-22. PMID 7712285 DOI: 10.1016/0959-440X(94)90262-3 |
0.49 |
|
| 1994 |
Liao DI, Herzberg O. Refined structures of the active Ser83-->Cys and impaired Ser46-->Asp histidine-containing phosphocarrier proteins. Structure (London, England : 1993). 2: 1203-16. PMID 7704530 DOI: 10.1016/S0969-2126(94)00122-7 |
0.469 |
|
| 1993 |
Chen CC, Rahil J, Pratt RF, Herzberg O. Structure of a phosphonate-inhibited beta-lactamase. An analog of the tetrahedral transition state/intermediate of beta-lactam hydrolysis. Journal of Molecular Biology. 234: 165-78. PMID 8230196 DOI: 10.1006/Jmbi.1993.1571 |
0.483 |
|
| 1992 |
Herzberg O, Reddy P, Sutrina S, Saier MH, Reizer J, Kapadia G. Structure of the histidine-containing phosphocarrier protein HPr from Bacillus subtilis at 2.0-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 89: 2499-503. PMID 1549615 DOI: 10.1073/Pnas.89.6.2499 |
0.389 |
|
| 1991 |
Herzberg O. Refined crystal structure of β-lactamase from Staphylococcus aureus PC1 at 2.0 Å resolution Journal of Molecular Biology. 217: 701-719. PMID 2005620 DOI: 10.1016/0022-2836(91)90527-D |
0.391 |
|
| 1991 |
Worthylake D, Meadow ND, Roseman S, Liao DI, Herzberg O, Remington SJ. Three-dimensional structure of the Escherichia coli phosphocarrier protein IIIglc. Proceedings of the National Academy of Sciences of the United States of America. 88: 10382-6. PMID 1961703 DOI: 10.1073/Pnas.88.23.10382 |
0.343 |
|
| 1991 |
Herzberg O. Structure of the IIA domain of the glucose permease of bacillus subtilis at 2.2-å resolution a,b Biochemistry. 30: 9583-9594. PMID 1911744 DOI: 10.1021/Bi00104A004 |
0.443 |
|
| 1991 |
Herzberg O, Kapadia G, Blanco B, Smith TS, Coulson A. Structural basis for the inactivation of the P54 mutant of beta-lactamase from Staphylococcus aureus PC1. Biochemistry. 30: 9503-9. PMID 1892849 |
0.364 |
|
| 1991 |
Herzberg O, Moult J. Penicillin-binding and degrading enzymes Current Opinion in Structural Biology. 1: 946-953. DOI: 10.1016/0960-9822(92)90407-2 |
0.313 |
|
| 1987 |
Herzberg O, Moult J, James MNG. [46] molecular structure of troponin C and its implications for the Ca2+ triggering of muscle contraction Methods in Enzymology. 139: 610-618,IN1,619-632. PMID 3587039 DOI: 10.1016/0076-6879(87)39115-3 |
0.361 |
|
| 1987 |
Herzberg O, Moult J. Bacterial resistance to β-lactam antibiotics: Crystal structure of β-lactamase from Staphylococcus aureus PC1 at 2.5 Å resolution Science. 236: 694-701. PMID 3107125 DOI: 10.1126/Science.3107125 |
0.401 |
|
| 1985 |
Herzberg O, James MNG. Common structural framework of the two Ca2+/Mg2+ binding loops of troponin C and other Ca2+ binding proteins Biochemistry. 24: 5298-5302. PMID 4074697 DOI: 10.1021/Bi00341A004 |
0.374 |
|
| 1985 |
Moult J, Sawyer L, Herzberg O, Jones CL, Coulson AF, Green DW, Harding MM, Ambler RP. The crystal structure of beta-lactamase from Staphylococcus aureus at 0.5 nm resolution Biochemical Journal. 225: 167-176. PMID 2983660 DOI: 10.1042/Bj2250167 |
0.344 |
|
| Show low-probability matches. |