Year |
Citation |
Score |
2024 |
Zhao H, Wu H, Guseman A, Abeykoon D, Camara CM, Dalal Y, Fushman D, Papoian GA. The role of cryptic ancestral symmetry in histone folding mechanisms across Eukarya and Archaea. Plos Computational Biology. 20: e1011721. PMID 38181064 DOI: 10.1371/journal.pcbi.1011721 |
0.778 |
|
2021 |
Wu H, Dalal Y, Papoian GA. Binding Dynamics of Disordered Linker Histone H1 with a Nucleosomal Particle. Journal of Molecular Biology. 166881. PMID 33617899 DOI: 10.1016/j.jmb.2021.166881 |
0.649 |
|
2020 |
Jin S, Contessoto VG, Chen M, Schafer NP, Lu W, Chen X, Bueno C, Hajitaheri A, Sirovetz BJ, Davtyan A, Papoian GA, Tsai MY, Wolynes PG. AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Research. PMID 32383764 DOI: 10.1093/Nar/Gkaa356 |
0.754 |
|
2020 |
Pitman M, Dalal Y, Papoian GA. Minimal Cylinder Analysis Reveals the Mechanical Properties of Oncogenic Nucleosomes. Biophysical Journal. PMID 32097625 DOI: 10.1016/J.Bpj.2020.01.042 |
0.657 |
|
2020 |
Pitman M, Dalal Y, Papoian GA, Melters DP, Rakshit T, Dimitriadis EK, Bui M. Computational Modeling of Nucleosomal Mechanics and Epigenetic Modifications Biophysical Journal. 118: 9a. DOI: 10.1016/J.Bpj.2019.11.3372 |
0.61 |
|
2020 |
Melters DP, Pitman M, Rakshit T, Dimitriadis EK, Bui M, Papoian GA, Dalal Y. A Balance Between Elastic and Rigidified CENP-A Nucleosomes Govern Centromeric Chromatin Fidelity Biophysical Journal. 118: 8a. DOI: 10.1016/J.Bpj.2019.11.3369 |
0.609 |
|
2019 |
Melters DP, Pitman M, Rakshit T, Dimitriadis EK, Bui M, Papoian GA, Dalal Y. Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners. Proceedings of the National Academy of Sciences of the United States of America. PMID 31712435 DOI: 10.1073/Pnas.1911880116 |
0.644 |
|
2019 |
Zhao H, Winogradoff D, Dalal Y, Papoian GA. The Oligomerization Landscape of Histones. Biophysical Journal. PMID 31005236 DOI: 10.1016/J.Bpj.2019.03.021 |
0.777 |
|
2019 |
Wu H, Dalal Y, Papoian GA. Binding Dynamics of Disordered Linker Histone H1 with a Nucleosomal Particle Biophysical Journal. 116: 70a. DOI: 10.1016/J.Bpj.2018.11.421 |
0.624 |
|
2019 |
Pitman M, Dalal Y, Papoian GA. Cenp-A Hijacks the Histone Chaperone Network in Cancer--Computational Insights Biophysical Journal. 116: 436a. DOI: 10.1016/J.Bpj.2018.11.2347 |
0.587 |
|
2018 |
Wu H, Wolynes PG, Papoian GA. AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins. The Journal of Physical Chemistry. B. PMID 30091924 DOI: 10.1021/Acs.Jpcb.8B05791 |
0.499 |
|
2017 |
Bui M, Pitman M, Nuccio A, Roque S, Donlin-Asp PG, Nita-Lazar A, Papoian GA, Dalal Y. Internal modifications in the CENP-A nucleosome modulate centromeric dynamics. Epigenetics & Chromatin. 10: 17. PMID 28396698 DOI: 10.1186/S13072-017-0124-6 |
0.637 |
|
2016 |
Zhao H, Winogradoff D, Bui M, Dalal Y, Papoian GA. Promiscuous histone mis-assembly is actively prevented by chaperones. Journal of the American Chemical Society. PMID 27454815 DOI: 10.1021/Jacs.6B05355 |
0.757 |
|
2016 |
Zhang B, Zheng W, Papoian GA, Wolynes PG. Exploring the Free Energy Landscape of Nucleosomes. Journal of the American Chemical Society. PMID 27300314 DOI: 10.1021/Jacs.6B02893 |
0.592 |
|
2016 |
Davtyan A, Platkov M, Gruebele M, Papoian GA. Stochastic Resonance in Protein Folding Dynamics. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26992148 DOI: 10.1002/Cphc.201501125 |
0.636 |
|
2015 |
Gruebele M, Dave K, Davtyan A, Papoian GA, Platkov M. Environmental fluctuations and stochastic resonance in protein folding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26711088 DOI: 10.1002/Cphc.201501041 |
0.592 |
|
2015 |
Winogradoff D, Zhao H, Dalal Y, Papoian GA. Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome. Scientific Reports. 5: 17038. PMID 26602160 DOI: 10.1038/Srep17038 |
0.77 |
|
2015 |
Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. Journal of the American Chemical Society. 137: 6245-53. PMID 25905561 DOI: 10.1021/Jacs.5B00235 |
0.717 |
|
2015 |
Zhao H, Dalal Y, Papoian GA. The Binding Landscapes of the H3/H4 and CENP-A/H4 Dimers Biophysical Journal. 108: 538a. DOI: 10.1016/J.Bpj.2014.11.2949 |
0.758 |
|
2015 |
Zhao H, Fushman D, Papoian GA. The Association Landscape of Ubiquitin Dimerization Biophysical Journal. 108: 519a. DOI: 10.1016/J.Bpj.2014.11.2848 |
0.653 |
|
2015 |
Komianos JE, Popov K, Papoian G. Simulating Complex Mechanochemistry of Actin Networks Biophysical Journal. 108: 452a. DOI: 10.1016/J.Bpj.2014.11.2468 |
0.32 |
|
2015 |
Winogradoff D, Echeverria I, Papoian G. The Acetylation Landscape of the H4 Histone Tail Biophysical Journal. 108: 388a. DOI: 10.1016/J.Bpj.2014.11.2128 |
0.426 |
|
2015 |
Wu H, Papoian G. Structural and Dynamic Analysis on Disordered H4 Histone Tail by Modified AWSEM-MD Biophysical Journal. 108: 388a. DOI: 10.1016/J.Bpj.2014.11.2127 |
0.461 |
|
2013 |
Ma D, Bettis SE, Hanson K, Minakova M, Alibabaei L, Fondrie W, Ryan DM, Papoian GA, Meyer TJ, Waters ML, Papanikolas JM. Interfacial energy conversion in Ru(II) polypyridyl-derivatized oligoproline assemblies on TiO2. Journal of the American Chemical Society. 135: 5250-3. PMID 23514453 DOI: 10.1021/Ja312143H |
0.757 |
|
2013 |
Echeverria I, Makarov DE, Papoian G. Insight into the Molecular Origins of the Internal Friction in Unfolded Proteins Biophysical Journal. 104: 188a. DOI: 10.1016/J.Bpj.2012.11.1061 |
0.392 |
|
2013 |
Potoyan DA, Savelyev A, Papoian GA. Recent successes in coarse-grained modeling of DNA Wiley Interdisciplinary Reviews: Computational Molecular Science. 3: 69-83. DOI: 10.1002/wcms.1114 |
0.657 |
|
2012 |
Zheng W, Schafer NP, Davtyan A, Papoian GA, Wolynes PG. Predictive energy landscapes for protein-protein association. Proceedings of the National Academy of Sciences of the United States of America. 109: 19244-9. PMID 23129648 DOI: 10.1073/Pnas.1216215109 |
0.721 |
|
2012 |
Potoyan DA, Papoian GA. Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 17857-62. PMID 22988066 DOI: 10.1073/pnas.1201805109 |
0.729 |
|
2012 |
Zhuravlev PI, Lan Y, Minakova MS, Papoian GA. Theory of active transport in filopodia and stereocilia. Proceedings of the National Academy of Sciences of the United States of America. 109: 10849-54. PMID 22711803 DOI: 10.1073/Pnas.1200160109 |
0.75 |
|
2012 |
Wilger DJ, Bettis SE, Materese CK, Minakova M, Papoian GA, Papanikolas JM, Waters ML. Tunable energy transfer rates via control of primary, secondary, and tertiary structure of a coiled coil peptide scaffold. Inorganic Chemistry. 51: 11324-38. PMID 22679929 DOI: 10.1021/Ic300669T |
0.738 |
|
2012 |
Davtyan A, Schafer NP, Zheng W, Clementi C, Wolynes PG, Papoian GA. AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing. The Journal of Physical Chemistry. B. 116: 8494-503. PMID 22545654 DOI: 10.1021/Jp212541Y |
0.693 |
|
2012 |
Potoyan DA, Zhuravlev PI, Papoian GA. Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations. The Journal of Physical Chemistry. B. 116: 1709-15. PMID 22212071 DOI: 10.1021/jp209980b |
0.686 |
|
2012 |
Davtyan A, Zheng W, Schafer N, Wolynes P, Papoian G. AWSEM-MD: Coarse-Grained Protein Structure Prediction using Physical Potentials and Bioinformatically Based Local Structure Biasing Biophysical Journal. 102: 619a. DOI: 10.1016/J.Bpj.2011.11.3373 |
0.733 |
|
2011 |
Savelyev A, Materese CK, Papoian GA. Is DNA's rigidity dominated by electrostatic or nonelectrostatic interactions? Journal of the American Chemical Society. 133: 19290-3. PMID 22039974 DOI: 10.1021/Ja207984Z |
0.715 |
|
2011 |
Minakova M, Savelyev A, Papoian GA. Nonequilibrium water transport in a nonionic microemulsion system. The Journal of Physical Chemistry. B. 115: 6503-8. PMID 21528855 DOI: 10.1021/Jp201431U |
0.742 |
|
2011 |
Potoyan DA, Papoian GA. Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics. Journal of the American Chemical Society. 133: 7405-15. PMID 21517079 DOI: 10.1021/ja1111964 |
0.715 |
|
2011 |
Zhuravlev PI, Minakova M, Lan Y, Papoian GA. Myosin Motor Dynamics in Filopodia Biophysical Journal. 100: 596a. DOI: 10.1016/J.Bpj.2010.12.3433 |
0.748 |
|
2011 |
Bettis S, Wilger D, Materese C, Minakova M, Papoian G, Papanikolas JM, Waters ML. Energy transfer in ruthenium and osmium functionalized coiled-coil peptides Acs National Meeting Book of Abstracts. |
0.537 |
|
2010 |
Oklejas V, Zong C, Papoian GA, Wolynes PG. Protein structure prediction: do hydrogen bonding and water-mediated interactions suffice? Methods (San Diego, Calif.). 52: 84-90. PMID 20561998 DOI: 10.1016/J.Ymeth.2010.05.006 |
0.63 |
|
2010 |
Zhuravlev PI, Wu S, Potoyan DA, Rubinstein M, Papoian GA. Computing free energies of protein conformations from explicit solvent simulations. Methods (San Diego, Calif.). 52: 115-21. PMID 20493264 DOI: 10.1016/J.Ymeth.2010.05.003 |
0.679 |
|
2010 |
Potoyan D, Papoian G. Energy Landscape Analysis Reveals Residual Order in Histone Tail Dynamics Biophysical Journal. 98: 257a. DOI: 10.1016/J.Bpj.2009.12.1395 |
0.74 |
|
2009 |
Materese CK, Savelyev A, Papoian GA. Counterion atmosphere and hydration patterns near a nucleosome core particle. Journal of the American Chemical Society. 131: 15005-13. PMID 19778017 DOI: 10.1021/Ja905376Q |
0.737 |
|
2009 |
Zhuravlev PI, Materese CK, Papoian GA. Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins. The Journal of Physical Chemistry. B. 113: 8800-12. PMID 19453123 DOI: 10.1021/Jp810659U |
0.747 |
|
2008 |
Materese CK, Goldmon CC, Papoian GA. Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions. Proceedings of the National Academy of Sciences of the United States of America. 105: 10659-64. PMID 18664578 DOI: 10.1073/Pnas.0801850105 |
0.724 |
|
2007 |
Lätzer J, Papoian GA, Prentiss MC, Komives EA, Wolynes PG. Induced fit, folding, and recognition of the NF-kappaB-nuclear localization signals by IkappaBalpha and IkappaBbeta. Journal of Molecular Biology. 367: 262-74. PMID 17257619 DOI: 10.1016/J.Jmb.2006.12.006 |
0.752 |
|
2006 |
Lan Y, Wolynes PG, Papoian GA. A variational approach to the stochastic aspects of cellular signal transduction. The Journal of Chemical Physics. 125: 124106. PMID 17014165 DOI: 10.1063/1.2353835 |
0.403 |
|
2006 |
Zong C, Papoian GA, Ulander J, Wolynes PG. Role of topology, nonadditivity, and water-mediated interactions in predicting the structures of alpha/beta proteins. Journal of the American Chemical Society. 128: 5168-76. PMID 16608353 DOI: 10.1021/Ja058589V |
0.618 |
|
2004 |
Papoian GA, Ulander J, Eastwood MP, Luthey-Schulten Z, Wolynes PG. Water in protein structure prediction. Proceedings of the National Academy of Sciences of the United States of America. 101: 3352-7. PMID 14988499 DOI: 10.1073/Pnas.0307851100 |
0.484 |
|
2004 |
Levy Y, Papoian GA, Onuchic JN, Wolynes PG. Energy landscape analysis of protein dimers Israel Journal of Chemistry. 44: 281-297. DOI: 10.1560/Xgcb-Wuhn-Jrjc-Bv0Y |
0.505 |
|
2003 |
Papoian GA, Ulander J, Wolynes PG. Role of water mediated interactions in protein-protein recognition landscapes. Journal of the American Chemical Society. 125: 9170-8. PMID 15369374 DOI: 10.1021/Ja034729U |
0.459 |
|
2003 |
Papoian GA, Wolynes PG. The physics and bioinformatics of binding and folding-an energy landscape perspective. Biopolymers. 68: 333-49. PMID 12601793 DOI: 10.1002/Bip.10286 |
0.505 |
|
2003 |
Papoian GA, DeGrado WF, Klein ML. Probing the configurational space of a metalloprotein core: an ab initio molecular dynamics study of Duo Ferro 1 binuclear Zn cofactor. Journal of the American Chemical Society. 125: 560-9. PMID 12517172 DOI: 10.1021/Ja028161L |
0.409 |
|
2001 |
Ienco A, Hoffmann R, Papoian G. Electron-rich bonding and the importance of s,p mixing as one moves across a period: a lesson from the LiSn system. Journal of the American Chemical Society. 123: 2317-25. PMID 11456880 DOI: 10.1021/Ja0032576 |
0.423 |
|
2001 |
Papoian G, Hoffmann R. Electron-rich rods as building blocks for Sb strips and Te sheets. Journal of the American Chemical Society. 123: 6600-8. PMID 11439046 DOI: 10.1021/Ja003420X |
0.39 |
|
2000 |
Papoian G, Nørskov JK, Hoffmann R. A comparative theoretical study of the hydrogen, methyl, and ethyl chemisorption on the Pt(111) surface Journal of the American Chemical Society. 122: 4129-4144. DOI: 10.1021/Ja993483J |
0.426 |
|
2000 |
Papoian GA, Hoffmann R. Hypervalent bonding in one, two, and three dimensions: Extending the Zintl-Klemm concept to nonclassical electron-rich networks Angewandte Chemie - International Edition. 39: 2408-2448. DOI: 10.1002/1521-3773(20000717)39:14<2408::Aid-Anie2408>3.0.Co;2-U |
0.325 |
|
2000 |
Seo D, Papoian G, Hoffmann R. Generalized perturbational molecular orbital (PMO) theory*Dedicated to our friend, Mike Zerner. International Journal of Quantum Chemistry. 77: 408. DOI: 10.1002/(Sici)1097-461X(2000)77:1<408::Aid-Qua41>3.3.Co;2-T |
0.562 |
|
2000 |
Seo DK, Papoian G, Hoffmann R. Generalized perturbational molecular orbital (PMO) theory International Journal of Quantum Chemistry. 77: 408-420. DOI: 10.1002/(Sici)1097-461X(2000)77:1<408::Aid-Qua41>3.0.Co;2-1 |
0.388 |
|
1999 |
Glassey WV, Papoian GA, Hoffmann R. Total energy partitioning within a one-electron formalism: A Hamilton population study of surface-CO interaction in the c(2x2)-CO/Ni(100) chemisorption system Journal of Chemical Physics. 111: 893-910. |
0.744 |
|
1998 |
Papoian G, Hoffmann R. Building up Complexity from Strips and Sheets: The Electronic Structure of the La12Mn2Sb30Alloy Journal of Solid State Chemistry. 139: 8-21. DOI: 10.1006/Jssc.1998.7773 |
0.445 |
|
Low-probability matches (unlikely to be authored by this person) |
2017 |
Floyd C, Jarzynski C, Papoian G. Low-dimensional manifold of actin polymerization dynamics New Journal of Physics. 19: 125012. DOI: 10.1088/1367-2630/Aa9641 |
0.3 |
|
2014 |
Echeverria I, Papoian GA. Structural heterogeneity and dynamics of the unfolded ensemble Israel Journal of Chemistry. DOI: 10.1002/Ijch.201400030 |
0.274 |
|
2010 |
Zhuravlev PI, Papoian GA. Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework. Quarterly Reviews of Biophysics. 43: 295-332. PMID 20819242 DOI: 10.1017/S0033583510000119 |
0.27 |
|
2011 |
Zhuravlev PI, Potoyan DA, Rubinstein M, Papoian GA. Rigorous Calculation of Free Energy Difference Between Open and Closed States of Adenylate Kinase from Explicit Solvent Molecular Dynamics Biophysical Journal. 100: 378a. DOI: 10.1016/J.Bpj.2010.12.2252 |
0.268 |
|
2021 |
Poghosyan AH, Shahinyan AA, Kirakosyan GR, Ayvazyan NM, Mamasakhlisov YS, Papoian GA. A molecular dynamics study of protein denaturation induced by sulfonate-based surfactants. Journal of Molecular Modeling. 27: 261. PMID 34432183 DOI: 10.1007/s00894-021-04882-2 |
0.258 |
|
2008 |
Wu S, Zhuravlev PI, Papoian GA. High resolution approach to the native state ensemble kinetics and thermodynamics. Biophysical Journal. 95: 5524-32. PMID 18805918 DOI: 10.1529/Biophysj.108.136697 |
0.256 |
|
2015 |
Echeverria I, Papoian GA. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates. Plos Computational Biology. 11: e1003980. PMID 25675216 DOI: 10.1371/Journal.Pcbi.1003980 |
0.253 |
|
2015 |
Echeverria I, Papoian GA. Characterizing the Binding Landscape Around DNA: Is DNA a Slide? Biophysical Journal. 108: 76a. DOI: 10.1016/J.Bpj.2014.11.448 |
0.244 |
|
2010 |
Zhuravlev PI, Papoian GA. Functional versus folding landscapes: the same yet different. Current Opinion in Structural Biology. 20: 16-22. PMID 20102791 DOI: 10.1016/j.sbi.2009.12.010 |
0.242 |
|
2014 |
Echeverria I, Makarov DE, Papoian GA. Concerted dihedral rotations give rise to internal friction in unfolded proteins. Journal of the American Chemical Society. 136: 8708-13. PMID 24844314 DOI: 10.1021/Ja503069K |
0.239 |
|
2008 |
Papoian GA. Proteins with weakly funneled energy landscapes challenge the classical structure-function paradigm. Proceedings of the National Academy of Sciences of the United States of America. 105: 14237-8. PMID 18799750 DOI: 10.1073/pnas.0807977105 |
0.233 |
|
2009 |
Zhuravlev PI, Papoian GA. Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics. Proceedings of the National Academy of Sciences of the United States of America. 106: 11570-5. PMID 19556544 DOI: 10.1073/pnas.0812746106 |
0.219 |
|
2021 |
Floyd C, Levine H, Jarzynski C, Papoian GA. Understanding cytoskeletal avalanches using mechanical stability analysis. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34611021 DOI: 10.1073/pnas.2110239118 |
0.217 |
|
2017 |
Avdoshenko SM, Das A, Satija R, Papoian GA, Makarov DE. Theoretical and computational validation of the Kuhn barrier friction mechanism in unfolded proteins. Scientific Reports. 7: 269. PMID 28325911 DOI: 10.1038/S41598-017-00287-5 |
0.216 |
|
2016 |
Popov K, Komianos J, Papoian GA. MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks. Plos Computational Biology. 12: e1004877. PMID 27120189 DOI: 10.1371/journal.pcbi.1004877 |
0.209 |
|
2019 |
Floyd C, Papoian GA, Jarzynski C. Quantifying dissipation in actomyosin networks. Interface Focus. 9: 20180078. PMID 31065344 DOI: 10.1016/J.Bpj.2018.11.1383 |
0.209 |
|
2010 |
Savelyev A, Papoian GA. Chemically accurate coarse graining of double-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 107: 20340-5. PMID 21059937 DOI: 10.1073/pnas.1001163107 |
0.202 |
|
2009 |
Savelyev A, Papoian GA. Molecular renormalization group coarse-graining of electrolyte solutions: application to aqueous NaCl and KCl. The Journal of Physical Chemistry. B. 113: 7785-93. PMID 19425537 DOI: 10.1021/jp9005058 |
0.197 |
|
2009 |
Savelyev A, Papoian GA. Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA. Biophysical Journal. 96: 4044-52. PMID 19450476 DOI: 10.1016/j.bpj.2009.02.067 |
0.193 |
|
2007 |
Savelyev A, Papoian GA. Inter-DNA electrostatics from explicit solvent molecular dynamics simulations. Journal of the American Chemical Society. 129: 6060-1. PMID 17455935 DOI: 10.1021/ja070207t |
0.193 |
|
2016 |
Dobramysl U, Papoian GA, Erban R. Steric Effects Induce Geometric Remodeling of Actin Bundles in Filopodia. Biophysical Journal. 110: 2066-75. PMID 27166814 DOI: 10.1016/J.Bpj.2016.03.013 |
0.186 |
|
2010 |
Hu L, Papoian GA. Mechano-chemical feedbacks regulate actin mesh growth in lamellipodial protrusions. Biophysical Journal. 98: 1375-84. PMID 20409456 DOI: 10.1016/j.bpj.2009.11.054 |
0.186 |
|
2020 |
Li X, Ni Q, He X, Kong J, Lim SM, Papoian GA, Trzeciakowski JP, Trache A, Jiang Y. Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry. Plos Computational Biology. 16: e1007693. PMID 32520928 DOI: 10.1371/Journal.Pcbi.1007693 |
0.178 |
|
2011 |
Zhuravlev PI, Papoian GA. Protein fluxes along the filopodium as a framework for understanding the growth-retraction dynamics: the interplay between diffusion and active transport. Cell Adhesion & Migration. 5: 448-56. PMID 21975554 DOI: 10.4161/cam.5.5.17868 |
0.17 |
|
2022 |
Floyd C, Ni H, Gunaratne RS, Erban R, Papoian GA. On Stretching, Bending, Shearing, and Twisting of Actin Filaments I: Variational Models. Journal of Chemical Theory and Computation. 18: 4865-4878. PMID 35895330 DOI: 10.1021/acs.jctc.2c00318 |
0.169 |
|
2022 |
Ciocanel MV, Chandrasekaran A, Mager C, Ni Q, Papoian GA, Dawes A. Simulated actin reorganization mediated by motor proteins. Plos Computational Biology. 18: e1010026. PMID 35389987 DOI: 10.1371/journal.pcbi.1010026 |
0.166 |
|
2019 |
Chandrasekaran A, Upadhyaya A, Papoian GA. Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling. Plos Computational Biology. 15: e1007156. PMID 31287817 DOI: 10.1371/Journal.Pcbi.1007156 |
0.166 |
|
2011 |
Hu L, Papoian GA. How does the antagonism between capping and anti-capping proteins affect actin network dynamics? Journal of Physics. Condensed Matter : An Institute of Physics Journal. 23: 374101. PMID 21862844 DOI: 10.1088/0953-8984/23/37/374101 |
0.164 |
|
2008 |
Savelyev A, Papoian GA. Polyionic charge density plays a key role in differential recognition of mobile ions by biopolymers. The Journal of Physical Chemistry. B. 112: 9135-45. PMID 18597519 DOI: 10.1021/jp801448s |
0.163 |
|
2019 |
Ni Q, Papoian GA. Turnover versus Treadmilling in Actin Network Assembly and Remodeling. Cytoskeleton (Hoboken, N.J.). PMID 31525282 DOI: 10.1002/cm.21564 |
0.159 |
|
2007 |
Savelyev A, Papoian GA. Free energy calculations of counterion partitioning between DNA and chloride solutions Mendeleev Communications. 17: 97-99. DOI: 10.1016/j.mencom.2007.03.015 |
0.154 |
|
2018 |
Komianos JE, Papoian GA. Stochastic Ratcheting on a Funneled Energy Landscape Is Necessary for Highly Efficient Contractility of Actomyosin Force Dipoles Physical Review X. 8. DOI: 10.1103/physrevx.8.021006 |
0.153 |
|
2006 |
Savelyev A, Papoian GA. Electrostatic, steric, and hydration interactions favor Na(+) condensation around DNA compared with K(+). Journal of the American Chemical Society. 128: 14506-18. PMID 17090034 DOI: 10.1021/ja0629460 |
0.15 |
|
2022 |
Chandrasekaran A, Clarke A, McQueen P, Fang HY, Papoian GA, Giniger E. Computational simulations reveal that Abl activity controls cohesiveness of actin networks in growth cones. Molecular Biology of the Cell. mbcE21110535. PMID 35857718 DOI: 10.1091/mbc.E21-11-0535 |
0.146 |
|
2008 |
Lan Y, Papoian GA. The stochastic dynamics of filopodial growth. Biophysical Journal. 94: 3839-52. PMID 18234810 DOI: 10.1529/biophysj.107.123778 |
0.143 |
|
2010 |
Zhuravlev PI, Der BS, Papoian GA. Design of active transport must be highly intricate: a possible role of myosin and Ena/VASP for G-actin transport in filopodia. Biophysical Journal. 98: 1439-48. PMID 20409462 DOI: 10.1016/j.bpj.2009.12.4325 |
0.14 |
|
2022 |
Ni Q, Wagh K, Pathni A, Ni H, Vashisht V, Upadhyaya A, Papoian GA. A tug of war between filament treadmilling and myosin induced contractility generates actin rings. Elife. 11. PMID 36269229 DOI: 10.7554/eLife.82658 |
0.137 |
|
2013 |
Hu L, Papoian GA. Molecular transport modulates the adaptive response of branched actin networks to an external force. The Journal of Physical Chemistry. B. 117: 13388-96. PMID 23962335 DOI: 10.1021/jp405179e |
0.133 |
|
2014 |
Erban R, Flegg MB, Papoian GA. Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia. Bulletin of Mathematical Biology. 76: 799-818. PMID 23640574 DOI: 10.1007/S11538-013-9844-3 |
0.132 |
|
2011 |
Hu L, Papoian GA. Stochastic Simulation Study of the Role of Capping and Anti-Capping Proteins in Regulating Actin Network Growth Biophysical Journal. 100: 443a. DOI: 10.1016/j.bpj.2010.12.2607 |
0.13 |
|
2022 |
Chandrasekaran A, Giniger E, Papoian GA. Nucleation causes an actin network to fragment into multiple high-density domains. Biophysical Journal. PMID 35927959 DOI: 10.1016/j.bpj.2022.07.035 |
0.129 |
|
2006 |
Lan Y, Papoian GA. The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade. The Journal of Chemical Physics. 125: 154901. PMID 17059287 DOI: 10.1063/1.2358342 |
0.125 |
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2008 |
Lan Y, Elston TC, Papoian GA. Elimination of fast variables in chemical Langevin equations. The Journal of Chemical Physics. 129: 214115. PMID 19063552 DOI: 10.1063/1.3027499 |
0.123 |
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2020 |
Floyd C, Papoian GA, Jarzynski C. Gibbs free energy change of a discrete chemical reaction event. The Journal of Chemical Physics. 152: 084116. PMID 32113353 DOI: 10.1063/1.5140980 |
0.116 |
|
2007 |
Lan Y, Papoian GA. Evolution of complex probability distributions in enzyme cascades. Journal of Theoretical Biology. 248: 537-45. PMID 17631318 DOI: 10.1016/j.jtbi.2007.06.008 |
0.111 |
|
2023 |
Ni H, Ni Q, Papoian GA, Trache A, Jiang Y. Myosin and [Formula: see text]-actinin regulation of stress fiber contractility under tensile stress. Scientific Reports. 13: 8662. PMID 37248294 DOI: 10.1038/s41598-023-35675-7 |
0.111 |
|
2021 |
Ni H, Papoian GA. Membrane-MEDYAN: Simulating Deformable Vesicles Containing Complex Cytoskeletal Networks. The Journal of Physical Chemistry. B. PMID 34461720 DOI: 10.1021/acs.jpcb.1c02336 |
0.106 |
|
2010 |
Tanaka N, Papoian GA. Reverse-engineering of biochemical reaction networks from spatio-temporal correlations of fluorescence fluctuations. Journal of Theoretical Biology. 264: 490-500. PMID 20171230 DOI: 10.1016/j.jtbi.2010.02.022 |
0.101 |
|
2000 |
Seo DK, Papoian G, Hoffmann R. Generalized Perturbational Molecular Orbital (PMO) Theory International Journal of Quantum Chemistry. 77: 408-420. |
0.091 |
|
2007 |
Lan Y, Papoian GA. Stochastic resonant signaling in enzyme cascades. Physical Review Letters. 98: 228301. PMID 17677882 DOI: 10.1103/PhysRevLett.98.228301 |
0.089 |
|
2019 |
Ni Q, Upadhyaya A, Papoian GA. Rapid Treadmilling and Myosin Motors Synergistically Induce Formation of Ring-Like Actomyosin Architectures and Cortexes Biophysical Journal. 116: 251a. DOI: 10.1016/J.Bpj.2018.11.1371 |
0.084 |
|
2013 |
Popov KI, Papoian GA. Capsid deformations reveal complex mechano-chemistry. Biophysical Journal. 105: 2233-4. PMID 24268133 DOI: 10.1016/j.bpj.2013.09.055 |
0.081 |
|
2023 |
Fang HY, Forghani R, Clarke A, McQueen PG, Chandrasekaran A, O'Neill KM, Losert W, Papoian GA, Giniger E. Enabled primarily controls filopodial morphology, not actin organization, in the TSM1 growth cone in . Molecular Biology of the Cell. mbcE23010003. PMID 37223966 DOI: 10.1091/mbc.E23-01-0003 |
0.079 |
|
2010 |
Hu L, Papoian GA. Mechano-Chemical Feedbacks Play a Major Role in Regulating Actin Mesh Growth in Lamellipodial Protrusions Biophysical Journal. 98: 162a. DOI: 10.1016/j.bpj.2009.12.871 |
0.067 |
|
2012 |
Rubinstein M, Papoian GA. Polyelectrolytes in biology and soft matter Soft Matter. 8: 9265-9267. DOI: 10.1039/C2Sm90104H |
0.049 |
|
2019 |
Ni H, Papoian GA. Mechanochemical Simulations of Integrated Membrane-Cytoskeletal Systems Biophysical Journal. 116: 413a. DOI: 10.1016/j.bpj.2018.11.2229 |
0.044 |
|
2019 |
Chandrasekaran A, Papoian GA, Giniger E. Computational Study of Abl Pathway Based Axonal Guidance Biophysical Journal. 116: 258a. DOI: 10.1016/J.Bpj.2018.11.1407 |
0.04 |
|
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