Robert R. Birge - Publications

Affiliations: 
1975-1984 Chemistry University of California, Riverside, Riverside, CA, United States 
 1984-1987 Chemistry Carnegie Mellon University, Pittsburgh, PA 
 1988-2000 Syracuse University, Syracuse, NY, United States 
 2000- University of Connecticut, Storrs, CT, United States 
Area:
nanotechnology
Website:
http://chemistry.uconn.edu/person/robert-birge/

146 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Greco JA, Wagner NL, Jensen RJ, Lawrence DB, Ranaghan MJ, Sandberg MN, Sandberg DJ, Birge RR. Activation of retinal ganglion cells using a biomimetic artificial retina. Journal of Neural Engineering. PMID 34768254 DOI: 10.1088/1741-2552/ac395c  0.709
2018 Guberman-Pfeffer MJ, Greco JA, Birge RR, Frank HA, Gascón JA. Light Harvesting by Equally Contributing Mechanisms in a Photosynthetic Antenna Protein. The Journal of Physical Chemistry Letters. PMID 29337581 DOI: 10.1021/Acs.Jpclett.7B03211  0.399
2018 Wax TJ, Greco JA, Chen S, Wagner NL, Zhao J, Birge RR. Tunable photocycle kinetics of a hybrid bacteriorhodopsin/quantum dot system Nano Research. 12: 365-373. DOI: 10.1007/S12274-018-2224-4  0.3
2017 Greco JA, Wagner NL, Frank HA, Birge RR. The Forbidden 11Bu- Excited Singlet State in Peridinin and Peridinin Analogues. The Journal of Physical Chemistry. A. PMID 29202230 DOI: 10.1021/Acs.Jpca.7B10001  0.374
2017 Trieu MM, Devine EL, Lamarche LB, Ammerman AE, Greco JA, Birge RR, Theobald DL, Oprian DD. Expression, Purification, and Spectral Tuning of RhoGC, a Retinylidene/Guanylyl Cyclase Fusion Protein and Optogenetics Tool from the Aquatic Fungus Blastocladiella emersonii. The Journal of Biological Chemistry. PMID 28473465 DOI: 10.1074/Jbc.M117.789636  0.667
2016 Guberman-Pfeffer MJ, Greco JA, Samankumara LP, Zeller M, Birge RR, Gascón JA, Brückner C. Bacteriochlorins with a Twist: Discovery of a Unique Mechanism to Red-Shift the Optical Spectra of Bacteriochlorins. Journal of the American Chemical Society. PMID 27997161 DOI: 10.1021/Jacs.6B12419  0.397
2016 Greco JA, LaFountain AM, Kinashi N, Shinada T, Sakaguchi K, Katsumura S, Magdaong NC, Niedzwiedzki DM, Birge RR, Frank HA. Spectroscopic Investigation of the Carotenoid Deoxyperidinin: Direct Observation of the Forbidden S0 → S1 Transition. The Journal of Physical Chemistry. B. PMID 26907520 DOI: 10.1021/Acs.Jpcb.6B00439  0.384
2016 Kang HS, Esemoto NN, Diers JR, Niedzwiedzki DM, Greco JA, Akhigbe J, Yu Z, Pancholi C, Viswanathan Bhagavathy G, Nguyen JK, Kirmaier C, Birge RR, Ptaszek M, Holten D, Bocian DF. Effects of Strong Electronic Coupling in Chlorin and Bacteriochlorin Dyads. The Journal of Physical Chemistry. A. PMID 26765839 DOI: 10.1021/Acs.Jpca.5B10686  0.412
2016 Adamec F, Greco JA, Lafountain AM, Magdaong NM, Fuciman M, Birge RR, Polívka T, Frank HA. Spectroscopic investigation of a brightly colored psittacofulvin pigment from parrot feathers Chemical Physics Letters. 648: 195-199. DOI: 10.1016/J.Cplett.2016.02.029  0.353
2015 Greco JA, Shima S, Wagner NL, McCarthy JR, Atticks K, Brückner C, Birge RR. Two-photon spectroscopy of the Q-bands of meso -tetraphenyl-porphyrin and -chlorin framework derivatives Journal of Physical Chemistry C. 119: 3711-3724. DOI: 10.1021/Jp5117883  0.366
2014 Sandberg MN, Greco JA, Wagner NL, Amora TL, Ramos LA, Chen MH, Knox BE, Birge RR. Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant. Soj Biochemistry. 1. PMID 25621306  0.793
2014 Magdaong NM, LaFountain AM, Greco JA, Gardiner AT, Carey AM, Cogdell RJ, Gibson GN, Birge RR, Frank HA. High efficiency light harvesting by carotenoids in the LH2 complex from photosynthetic bacteria: unique adaptation to growth under low-light conditions. The Journal of Physical Chemistry. B. 118: 11172-89. PMID 25171303 DOI: 10.1021/Jp5070984  0.314
2014 Magdaong NM, Niedzwiedzki DM, Greco JA, Liu H, Yano K, Kajikawa T, Sakaguchi K, Katsumura S, Birge RR, Frank HA. Excited state properties of a short π-electron conjugated peridinin analogue. Chemical Physics Letters. 593: 132-139. PMID 24678069 DOI: 10.1016/J.Cplett.2014.01.002  0.339
2014 Ranaghan MJ, Greco JA, Wagner NL, Grewal R, Rangarajan R, Koscielecki JF, Wise KJ, Birge RR. Photochromic bacteriorhodopsin mutant with high holographic efficiency and enhanced stability via a putative self-repair mechanism. Acs Applied Materials & Interfaces. 6: 2799-808. PMID 24498928 DOI: 10.1021/Am405363Z  0.783
2014 Greco JA, Rossi A, Birge RR, Brückner C. A spectroscopic and theoretical investigation of a free-base meso-trithienylcorrole. Photochemistry and Photobiology. 90: 402-14. PMID 24303811 DOI: 10.1111/Php.12203  0.418
2013 Kuemmel CM, Sandberg MN, Birge RR, Knox BE. A conserved aromatic residue regulating photosensitivity in short-wavelength sensitive cone visual pigments. Biochemistry. 52: 5084-91. PMID 23808485 DOI: 10.1021/Bi400490G  0.358
2013 Wagner NL, Greco JA, Ranaghan MJ, Birge RR. Directed evolution of bacteriorhodopsin for applications in bioelectronics. Journal of the Royal Society, Interface / the Royal Society. 10: 20130197. PMID 23676894 DOI: 10.1098/Rsif.2013.0197  0.742
2013 Wagner NL, Greco JA, Enriquez MM, Frank HA, Birge RR. The nature of the intramolecular charge transfer state in peridinin. Biophysical Journal. 104: 1314-25. PMID 23528091 DOI: 10.1016/J.Bpj.2013.01.045  0.363
2013 Christensen RL, Enriquez MM, Wagner NL, Peacock-Villada AY, Scriban C, Schrock RR, Polívka T, Frank HA, Birge RR. Energetics and dynamics of the low-lying electronic states of constrained polyenes: implications for infinite polyenes. The Journal of Physical Chemistry. A. 117: 1449-65. PMID 23330819 DOI: 10.1021/Jp310592S  0.369
2013 George DK, Knab JR, He Y, Kumauchi M, Birge RR, Hoff WD, Markelz AG. Photoactive yellow protein terahertz response: Hydration, heating and intermediate states Ieee Transactions On Terahertz Science and Technology. 3: 288-294. DOI: 10.1109/Tthz.2013.2256233  0.364
2012 Enriquez MM, Hananoki S, Hasegawa S, Kajikawa T, Katsumura S, Wagner NL, Birge RR, Frank HA. Effect of Molecular Symmetry on the Spectra and Dynamics of the Intramolecular Charge Transfer (ICT) state of peridinin. The Journal of Physical Chemistry. B. 116: 10748-56. PMID 22889055 DOI: 10.1021/Jp305804Q  0.394
2012 Brückner C, Ogikubo J, McCarthy JR, Akhigbe J, Hyland MA, Daddario P, Worlinsky JL, Zeller M, Engle JT, Ziegler CJ, Ranaghan MJ, Sandberg MN, Birge RR. meso-arylporpholactones and their reduction products. The Journal of Organic Chemistry. 77: 6480-94. PMID 22734444 DOI: 10.1021/Jo300963M  0.756
2012 Chen MH, Kuemmel C, Birge RR, Knox BE. Rapid release of retinal from a cone visual pigment following photoactivation. Biochemistry. 51: 4117-25. PMID 22217337 DOI: 10.1021/Bi201522H  0.349
2012 Ranaghan MJ, Wagner NL, Sandberg MN, Birge RR. Optical applications of biomolecules Optical Biomimetics: Materials and Applications. 20-78. DOI: 10.1016/B978-1-84569-802-7.50002-0  0.697
2012 Greco JA, Wagner NL, Ranaghan MJ, Rajasekaran S, Birge RR. Biomolecular Electronics and Protein-Based Optical Computing Biomolecular Information Processing: From Logic Systems to Smart Sensors and Actuators. 33-59. DOI: 10.1002/9783527645480.ch3  0.715
2011 Ranaghan MJ, Schwall CT, Alder NN, Birge RR. Green proteorhodopsin reconstituted into nanoscale phospholipid bilayers (nanodiscs) as photoactive monomers. Journal of the American Chemical Society. 133: 18318-27. PMID 21951206 DOI: 10.1021/Ja2070957  0.766
2011 Chen MH, Sandberg DJ, Babu KR, Bubis J, Surya A, Ramos LS, Zapata HJ, Galan JF, Sandberg MN, Birge RR, Knox BE. Conserved residues in the extracellular loops of short-wavelength cone visual pigments. Biochemistry. 50: 6763-73. PMID 21688771 DOI: 10.1021/Bi101557M  0.785
2011 Kusumoto T, Kosumi D, Uragami C, Frank HA, Birge RR, Cogdell RJ, Hashimoto H. Femtosecond transient absorption spectroscopic study of a carbonyl-containing carotenoid analogue, 2-(all-trans-retinylidene)-indan-1,3-dione. The Journal of Physical Chemistry. A. 115: 2110-9. PMID 21361262 DOI: 10.1021/Jp111313F  0.392
2011 Sandberg MN, Amora TL, Ramos LS, Chen MH, Knox BE, Birge RR. Glutamic acid 181 is negatively charged in the bathorhodopsin photointermediate of visual rhodopsin. Journal of the American Chemical Society. 133: 2808-11. PMID 21319741 DOI: 10.1021/Ja1094183  0.785
2010 Ranaghan MJ, Shima S, Ramos L, Poulin DS, Whited G, Rajasekaran S, Stuart JA, Albert AD, Birge RR. Photochemical and thermal stability of green and blue proteorhodopsins: implications for protein-based bioelectronic devices. The Journal of Physical Chemistry. B. 114: 14064-70. PMID 20964279 DOI: 10.1021/Jp106633W  0.747
2010 Enriquez MM, Fuciman M, LaFountain AM, Wagner NL, Birge RR, Frank HA. The intramolecular charge transfer state in carbonyl-containing polyenes and carotenoids. The Journal of Physical Chemistry. B. 114: 12416-26. PMID 20825184 DOI: 10.1021/Jp106113H  0.401
2010 Kirmaier C, Song HE, Yang E, Schwartz JK, Hindin E, Diers JR, Loewe RS, Tomizaki KY, Chevalier F, Ramos L, Birge RR, Lindsey JS, Bocian DF, Holten D. Excited-state photodynamics of perylene-porphyrin dyads. 5. Tuning light-harvesting characteristics via perylene substituents, connection motif, and three-dimensional architecture. The Journal of Physical Chemistry. B. 114: 14249-64. PMID 20112987 DOI: 10.1021/Jp910705Q  0.695
2010 Hudgins M, Butler J, Fernandez R, Gertz FT, Ranaghan MJ, Birge R, Haddon RC, Khizroev S. Photo-response of electrostatically deposited Bacteriorhodopsin monolayer films for protein-based disk recording beyond 10 Tbit/in2 Journal of Nanoelectronics and Optoelectronics. 5: 287-289. DOI: 10.1166/Jno.2010.1111  0.76
2009 Niedzwiedzki DM, Sandberg DJ, Cong H, Sandberg MN, Gibson GN, Birge RR, Frank HA. Ultrafast Time-resolved Absorption Spectroscopy of Geometric Isomers of Carotenoids. Chemical Physics. 357: 4-16. PMID 20161150 DOI: 10.1016/J.Chemphys.2008.07.011  0.405
2009 Schulte T, Niedzwiedzki DM, Birge RR, Hiller RG, Polívka T, Hofmann E, Frank HA. Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 106: 20764-9. PMID 19934052 DOI: 10.1073/Pnas.0908938106  0.378
2008 Premvardhan L, Sandberg DJ, Fey H, Birge RR, Büchel C, van Grondelle R. The charge-transfer properties of the S2 state of fucoxanthin in solution and in fucoxanthin chlorophyll-a/c2 protein (FCP) based on stark spectroscopy and molecular-orbital theory. The Journal of Physical Chemistry. B. 112: 11838-53. PMID 18722413 DOI: 10.1021/jp802689p  0.754
2008 Amora TL, Ramos LS, Galan JF, Birge RR. Spectral tuning of deep red cone pigments. Biochemistry. 47: 4614-20. PMID 18370404 DOI: 10.1021/Bi702069D  0.772
2008 Xi B, Tetley WC, Marcy DL, Zhong C, Whited G, Birge RR, Stuart JA. Evaluation of blue and green absorbing proteorhodopsins as holographic materials. The Journal of Physical Chemistry. B. 112: 2524-32. PMID 18237161 DOI: 10.1021/Jp0740752  0.579
2008 Hillebrecht JR, Koscielecki JF, Wise KJ, Krebs MP, Stuart JA, Birge RR. Optimizing photoactive proteins for optoelectronic environments by using directed evolution Nanobiotechnology: Bioinspired Devices and Materials of the Future. 121-140. DOI: 10.1007/978-1-59745-218-2_7  0.765
2007 Rangarajan R, Galan JF, Whited G, Birge RR. Mechanism of spectral tuning in green-absorbing proteorhodopsin. Biochemistry. 46: 12679-86. PMID 17927209 DOI: 10.1021/Bi700955X  0.791
2007 Galinato MG, Niedzwiedzki D, Deal C, Birge RR, Frank HA. Cation radicals of xanthophylls. Photosynthesis Research. 94: 67-78. PMID 17638112 DOI: 10.1007/S11120-007-9218-5  0.371
2007 Niedzwiedzki D, Koscielecki JF, Cong H, Sullivan JO, Gibson GN, Birge RR, Frank HA. Ultrafast dynamics and excited state spectra of open-chain carotenoids at room and low temperatures. The Journal of Physical Chemistry. B. 111: 5984-98. PMID 17441762 DOI: 10.1021/Jp070500F  0.803
2007 Ramos LS, Chen MH, Knox BE, Birge RR. Regulation of photoactivation in vertebrate short wavelength visual pigments: protonation of the retinylidene Schiff base and a counterion switch. Biochemistry. 46: 5330-40. PMID 17439245 DOI: 10.1021/Bi700138G  0.716
2006 Kusumoto T, Horibe T, Kajikawa T, Hasegawa S, Iwashita T, Cogdell RJ, Birge RR, Frank HA, Katsumura S, Hashimoto H. Stark Absorption Spectroscopy of Peridinin and Allene-Modified Analogues. Chemical Physics. 373: 71-79. PMID 21339887 DOI: 10.1016/J.Chemphys.2010.01.018  0.327
2006 Ilagan RP, Koscielecki JF, Hiller RG, Sharples FP, Gibson GN, Birge RR, Frank HA. Femtosecond time-resolved absorption spectroscopy of main-form and high-salt peridinin-chlorophyll a-proteins at low temperatures. Biochemistry. 45: 14052-63. PMID 17115700 DOI: 10.1021/Bi061217U  0.803
2006 Niedzwiedzki DM, Sullivan JO, Polívka T, Birge RR, Frank HA. Femtosecond time-resolved transient absorption spectroscopy of xanthophylls. The Journal of Physical Chemistry. B. 110: 22872-85. PMID 17092039 DOI: 10.1021/Jp0622738  0.386
2006 Prokhorenko VI, Nagy AM, Waschuk SA, Brown LS, Birge RR, Miller RJ. Coherent control of retinal isomerization in bacteriorhodopsin. Science (New York, N.Y.). 313: 1257-61. PMID 16946063 DOI: 10.1126/Science.1130747  0.366
2006 Brückner C, Foss PC, Sullivan JO, Pelto R, Zeller M, Birge RR, Crundwell G. Origin of the bathochromically shifted optical spectra of meso-tetrathien-2'- and 3'-ylporphyrins as compared to meso-tetraphenylporphyrin. Physical Chemistry Chemical Physics : Pccp. 8: 2402-12. PMID 16710488 DOI: 10.1039/B600010J  0.355
2006 Hillebrecht JR, Galan J, Rangarajan R, Ramos L, McCleary K, Ward DE, Stuart JA, Birge RR. Structure, function, and wavelength selection in blue-absorbing proteorhodopsin. Biochemistry. 45: 1579-90. PMID 16460005 DOI: 10.1021/Bi051851S  0.803
2006 Xi B, Wise KJ, Stuart JA, Birge RR. Bacteriorhodopsin-based 3D optical memory Bionanotechnology: Proteins to Nanodevices. 39-59. DOI: 10.1007/978-1-4020-4375-8_4  0.499
2006 Wise KJ, Hillebrecht JR, Koscielecki JF, Stuart JA, Birge RR. Optimization of Proteins for Molecular and Biomolecular Electronic Devices Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.200400068  0.776
2005 Kee HL, Kirmaier C, Yu L, Thamyongkit P, Youngblood WJ, Calder ME, Ramos L, Noll BC, Bocian DF, Scheidt WR, Birge RR, Lindsey JS, Holten D. Structural control of the photodynamics of boron-dipyrrin complexes. The Journal of Physical Chemistry. B. 109: 20433-43. PMID 16853644 DOI: 10.1021/Jp0525078  0.707
2005 Gillespie NB, Ren L, Ramos L, Daniell H, Dews D, Utzat KA, Stuart JA, Buck CH, Birge RR. Characterization and photochemistry of 13-desmethyl bacteriorhodopsin. The Journal of Physical Chemistry. B. 109: 16142-52. PMID 16853051 DOI: 10.1021/Jp052124+  0.801
2005 Pendon ZD, Sullivan JO, van der Hoef I, Lugtenburg J, Cua A, Bocian DF, Birge RR, Frank HA. Stereoisomers of carotenoids: spectroscopic properties of locked and unlocked cis-isomers of spheroidene. Photosynthesis Research. 86: 5-24. PMID 16172922 DOI: 10.1007/S11120-005-1205-0  0.389
2005 Hillebrecht JR, Koscielecki JF, Wise KJ, Marcy DL, Tetley W, Rangarajan R, Sullivan J, Brideau M, Krebs MP, Stuart JA, Birge RR. Optimization of protein-based volumetric optical memories and associative processors by using directed evolution Nanobiotechnology. 1: 141-151. DOI: 10.1385/Nbt:1:2:141  0.782
2004 Hillebrecht JR, Wise KJ, Koscielecki JF, Birge RR. Directed evolution of bacteriorhodopsin for device applications. Methods in Enzymology. 388: 333-47. PMID 15289081 DOI: 10.1016/S0076-6879(04)88026-1  0.781
2004 Ilagan RP, Shima S, Melkozernov A, Lin S, Blankenship RE, Sharples FP, Hiller RG, Birge RR, Frank HA. Spectroscopic properties of the main-form and high-salt peridinin-chlorophyll a proteins from Amphidinium carterae. Biochemistry. 43: 1478-87. PMID 14769024 DOI: 10.1021/Bi0357964  0.388
2004 Kusnetzow AK, Dukkipati A, Babu KR, Ramos L, Knox BE, Birge RR. Vertebrate ultraviolet visual pigments: protonation of the retinylidene Schiff base and a counterion switch during photoactivation. Proceedings of the National Academy of Sciences of the United States of America. 101: 941-6. PMID 14732701 DOI: 10.1073/Pnas.0305206101  0.802
2004 Chen JY, Knab JR, Cerne J, Hillebrecht JR, Birge RR, Markelz AG. Terahertz measurements of the Photoactive Protein Bacteriorhodopsin mutant D96N: M and P states Materials Research Society Symposium Proceedings. 826: 20-26. DOI: 10.1557/Proc-826-V2.6  0.343
2004 Xu J, Galan J, Ramian G, Savvidis P, Scopatz A, Birge RR, Allen SJ, Plaxco K. Terahertz Circular Dichroism Spectroscopy of Biomolecules Proceedings of Spie - the International Society For Optical Engineering. 5268: 19-26. DOI: 10.1117/12.518533  0.763
2003 Xu J, Ramian GJ, Galan JF, Savvidis PG, Scopatz AM, Birge RR, Allen SJ, Plaxco KW. Terahertz circular dichroism spectroscopy: a potential approach to the in situ detection of life's metabolic and genetic machinery. Astrobiology. 3: 489-504. PMID 14678660 DOI: 10.1089/153110703322610609  0.753
2003 Whitmire SE, Wolpert D, Markelz AG, Hillebrecht JR, Galan J, Birge RR. Protein flexibility and conformational state: a comparison of collective vibrational modes of wild-type and D96N bacteriorhodopsin. Biophysical Journal. 85: 1269-77. PMID 12885670 DOI: 10.1016/S0006-3495(03)74562-7  0.792
2003 Xu J, Stickrath AB, Bhattacharya P, Nees J, Váró G, Hillebrecht JR, Ren L, Birge RR. Direct measurement of the photoelectric response time of bacteriorhodopsin via electro-optic sampling. Biophysical Journal. 85: 1128-34. PMID 12885657 DOI: 10.1016/S0006-3495(03)74549-4  0.313
2003 Wolak MA, Gillespie NB, Birge RR, Lees WJ. Thermolysis of fluorinated cycloalkylidene fulgides yields a new class of photochromic compounds. Chemical Communications (Cambridge, England). 992-3. PMID 12744335 DOI: 10.1039/B300010A  0.682
2003 Wolak MA, Thomas CJ, Gillespie NB, Birge RR, Lees WJ. Tuning the optical properties of fluorinated indolylfulgimides. The Journal of Organic Chemistry. 68: 319-26. PMID 12530855 DOI: 10.1021/Jo026374N  0.729
2003 Shima S, Ilagan RP, Gillespie N, Sommer BJ, Hiller RG, Sharples FP, Frank HA, Birge RR. Two-photon and fluorescence spectroscopy and the effect of environment on the photochemical properties of peridinin in solution and in the peridinin-chlorophyll-protein from amphidinium carterae Journal of Physical Chemistry A. 107: 8052-8066. DOI: 10.1021/Jp022648Z  0.75
2003 Brückner C, McCarthy JR, Daniell HW, Pendon ZD, Ilagan RP, Francis TM, Ren L, Birge RR, Frank HA. A spectroscopic and computational study of the singlet and triplet excited states of synthetic β-functionalized chlorins Chemical Physics. 294: 285-303. DOI: 10.1016/S0301-0104(03)00282-9  0.332
2002 Wise KJ, Gillespie NB, Stuart JA, Krebs MP, Birge RR. Optimization of bacteriorhodopsin for bioelectronic devices. Trends in Biotechnology. 20: 387-94. PMID 12175770 DOI: 10.1016/S0167-7799(02)02023-1  0.714
2002 Dukkipati A, Kusnetzow A, Babu KR, Ramos L, Singh D, Knox BE, Birge RR. Phototransduction by vertebrate ultraviolet visual pigments: protonation of the retinylidene Schiff base following photobleaching. Biochemistry. 41: 9842-51. PMID 12146950 DOI: 10.1021/Bi025883G  0.801
2002 Choi G, Landin J, Galan JF, Birge RR, Albert AD, Yeagle PL. Structural studies of metarhodopsin II, the activated form of the G-protein coupled receptor, rhodopsin. Biochemistry. 41: 7318-24. PMID 12044163 DOI: 10.1021/Bi025507W  0.758
2002 Gillespie NB, Wise KJ, Ren L, Stuart JA, Marcy DL, Hillebrecht J, Li Q, Ramos L, Jordan K, Fyvie S, Birge RR. Characterization of the branched-photocycle intermediates P and Q of bacteriorhodopsin Journal of Physical Chemistry B. 106: 13352-13361. DOI: 10.1021/Jp021221P  0.792
2002 Wolak MA, Gillespie NB, Thomas CJ, Birge RR, Lees WJ. Optical and thermal properties of photochromic fluorinated adamantylidene indolylfulgides Journal of Photochemistry and Photobiology a-Chemistry. 147: 39-44. DOI: 10.1016/S1010-6030(01)00625-6  0.718
2002 Stuart JA, Marcy DL, Wise KJ, Birge RR. Volumetric optical memory based on bacteriorhodopsin Synthetic Metals. 127: 3-15. DOI: 10.1016/S0379-6779(01)00586-0  0.34
2002 Wolak MA, Gillespie NB, Thomas CJ, Birge RR, Lees WJ. Optical and thermal properties of photochromic fluorinated adamantylidene indolylfulgides Journal of Photochemistry and Photobiology a: Chemistry. 147: 39-44.  0.671
2001 Dukkipati A, Vought BW, Singh D, Birge RR, Knox BE. Serine 85 in transmembrane helix 2 of short-wavelength visual pigments interacts with the retinylidene Schiff base counterion. Biochemistry. 40: 15098-108. PMID 11735392 DOI: 10.1021/Bi011354L  0.779
2001 Ren L, Martin CH, Wise KJ, Gillespie NB, Luecke H, Lanyi JK, Spudich JL, Birge RR. Molecular mechanism of spectral tuning in sensory rhodopsin II. Biochemistry. 40: 13906-14. PMID 11705380 DOI: 10.1021/Bi0116487  0.759
2001 Babu KR, Dukkipati A, Birge RR, Knox BE. Regulation of phototransduction in short-wavelength cone visual pigments via the retinylidene Schiff base counterion. Biochemistry. 40: 13760-6. PMID 11705364 DOI: 10.1021/Bi015584B  0.73
2001 Kusnetzow A, Dukkipati A, Babu KR, Singh D, Vought BW, Knox BE, Birge RR. The photobleaching sequence of a short-wavelength visual pigment. Biochemistry. 40: 7832-44. PMID 11425310 DOI: 10.1021/Bi010387Y  0.774
2001 Singh D, Hudson BS, Middleton C, Birge RR. Conformation and orientation of the retinyl chromophore in rhodopsin: a critical evaluation of recent NMR data on the basis of theoretical calculations results in a minimum energy structure consistent with all experimental data. Biochemistry. 40: 4201-4. PMID 11284674 DOI: 10.1021/Bi001911O  0.494
2001 Xu J, Bhattacharya P, Marcy DL, Stuart JA, Birge RR. Photoconduction in bacteriorhodopsin/GaAs heterostructures Electronics Letters. 37: 648-649. DOI: 10.1049/El:20010426  0.332
2001 Dolan PM, Miller D, Cogdell RJ, Birge RR, Frank HA. Linear dichroism and the transition dipole moment orientation of the carotenoid in the LH2 antenna complex in membranes of Rhodopseudomonas acidophila strain 10050 Journal of Physical Chemistry B. 105: 12134-12142. DOI: 10.1021/Jp010271B  0.332
2001 Wolak MA, Gillespie NB, Thomas CJ, Birge RR, Lees WJ. Optical properties of photochromic fluorinated indolylfulgides Journal of Photochemistry and Photobiology a-Chemistry. 144: 83-91. DOI: 10.1016/S1010-6030(01)00550-0  0.716
2001 Wolak MA, Gillespie NB, Thomas CJ, Birge RR, Lees WJ. Optical properties of photochromic fluorinated indolylfulgides Journal of Photochemistry and Photobiology a: Chemistry. 144: 83-91.  0.666
2000 Vought BW, Salcedo E, Chadwell LV, Britt SG, Birge RR, Knox BE. Characterization of the primary photointermediates of Drosophila rhodopsin. Biochemistry. 39: 14128-37. PMID 11087361 DOI: 10.1021/Bi001135K  0.436
2000 He Z, Martin CH, Birge R, Freed KF. Theoretical studies on excited states of a phenolate anion in the environment of photoactive yellow protein Journal of Physical Chemistry A. 104: 2939-2952. DOI: 10.1021/Jp992615S  0.376
1999 Vought BW, Dukkipatti A, Max M, Knox BE, Birge RR. Photochemistry of the primary event in short-wavelength visual opsins at low temperature. Biochemistry. 38: 11287-97. PMID 10471278 DOI: 10.1021/Bi990968B  0.394
1999 Kusnetzow A, Singh DL, Martin CH, Barani IJ, Birge RR. Nature of the chromophore binding site of bacteriorhodopsin: the potential role of Arg82 as a principal counterion. Biophysical Journal. 76: 2370-89. PMID 10233056 DOI: 10.1016/S0006-3495(99)77394-7  0.574
1999 Birge RR, Gillespie NB, Izaguirre EW, Kusnetzow A, Lawrence AF, Singh D, Song QW, Schmidt E, Stuart JA, Seetharaman S, Wise KJ. Biomolecular Electronics: Protein-Based Associative Processors and Volumetric Memories Journal of Physical Chemistry B. 103: 10746-10766. DOI: 10.1021/Jp991883N  0.752
1998 Tallent JR, Stuart JA, Song QW, Schmidt EJ, Martin CH, Birge RR. Photochemistry in dried polymer films incorporating the deionized blue membrane form of bacteriorhodopsin. Biophysical Journal. 75: 1619-34. PMID 9746505 DOI: 10.1016/S0006-3495(98)77605-2  0.794
1998 Yamazaki M, Goodisman J, Birge RR. Quadratic electro-optic effects in bacteriorhodopsin: Measurement of γ(-ω;0,0,ω) in dried gelatin thin films Journal of Chemical Physics. 108: 5876-5887. DOI: 10.1063/1.475998  0.317
1998 Martin CH, Birge RR. Reparametrizing MNDO for Excited-State Calculations by Using ab Initio Effective Hamiltonian Theory:  Application to the 2,4-Pentadien-1-iminium Cation The Journal of Physical Chemistry A. 102: 852-860. DOI: 10.1021/Jp9722972  0.349
1998 Li F, Yang SI, Ciringh Y, Seth J, Martin CH, Singh DL, Kim D, Birge RR, Bocian DF, Holten D, Lindsey JS. Design, synthesis, and photodynamics of light-harvesting arrays comprised of a porphyrin and one, two, or eight boron-dipyrrin accessory pigments Journal of the American Chemical Society. 120: 10001-10017. DOI: 10.1021/Ja9812047  0.578
1996 Tallent J, Song QW, Li Z, Stuart J, Birge RR. Effective photochromic nonlinearity of dried blue-membrane bacteriorhodopsin films. Optics Letters. 21: 1339-41. PMID 19876345 DOI: 10.1364/Ol.21.001339  0.766
1996 Birge RR, Govender DSK, Izgi KC, Tan EHL. Role of Calcium in the Proton Pump of Bacteriorhodopsin. Microwave Evidence for a Cation-Gated Mechanism The Journal of Physical Chemistry. 100: 9990-10004. DOI: 10.1021/Jp953669E  0.338
1996 Tan EHL, Govender DSK, Birge RR. Large Organic Cations Can Replace Mg2+and Ca2+Ions in Bacteriorhodopsin and Maintain Proton Pumping Ability Journal of the American Chemical Society. 118: 2752-2753. DOI: 10.1021/Ja953491+  0.318
1995 Birge RR, Barlow RB. On the molecular origins of thermal noise in vertebrate and invertebrate photoreceptors. Biophysical Chemistry. 55: 115-26. PMID 7632872 DOI: 10.1016/0301-4622(94)00145-A  0.327
1995 Stuart JA, Vought BW, Zhang C‐, Birge RR. The active site of bacteriorhodopsin. Two‐photon spectroscopic evidence for a positively charged chromophore binding site mediated by calcium Biospectroscopy. 1: 9-28. DOI: 10.1002/Bspy.350010104  0.335
1994 Song Q, Zhang C, Gross RB, Birge RR. The intensity-dependent refractive index of chemically enhanced bacteriorhodopsin Optics Communications. 112: 296-301. DOI: 10.1016/0030-4018(94)90634-3  0.318
1993 Song QW, Zhang C, Blumer R, Gross RB, Chen Z, Birge RR. Chemically enhanced bacteriorhodopsin thin-film spatial light modulator. Optics Letters. 18: 1373. PMID 19823387 DOI: 10.1364/Ol.18.001373  0.351
1993 Birge RR. The unusual pK(a) of the rhodopsin chromophore: Is this how nature minimizes photoreceptor noise? Biophysical Journal. 64: 1371-2. PMID 19431891 DOI: 10.1016/S0006-3495(93)81501-7  0.37
1993 Barlow RB, Birge RR, Kaplan E, Tallent JR. On the molecular origin of photoreceptor noise. Nature. 366: 64-6. PMID 8232538 DOI: 10.1038/366064A0  0.787
1992 Tallent JR, Birge JR, Zhang CF, Wenderholm E, Birge RR. Conformational energetics and excited state level ordering in 11-cis retinal. Photochemistry and Photobiology. 56: 935-52. PMID 1492137 DOI: 10.1111/J.1751-1097.1992.Tb09716.X  0.804
1992 Birge R. Protein-based optical computing and memories Computer. 25: 56-67. DOI: 10.1109/2.166417  0.31
1992 Tallent JR, Hyde EW, Findsen LA, Fox GC, Birge RR. Molecular dynamics of the primary photochemical event in rhodopsin Journal of the American Chemical Society. 114: 1581-1592. DOI: 10.1021/Ja00031A007  0.781
1991 Birge RR, Lawrence AF, Tallent JR. Quantum effects, thermal statistics and reliability of nanoscale molecular and semiconductor devices Nanotechnology. 2: 73-87. DOI: 10.1088/0957-4484/2/2/001  0.766
1990 Birge RR. Photophysics and molecular electronic applications of the rhodopsins. Annual Review of Physical Chemistry. 41: 683-733. PMID 2257039 DOI: 10.1146/Annurev.Pc.41.100190.003343  0.38
1990 Birge RR, Izgi KC, Stuart JA, Tallent JR. Wavelength Dependence of the Photorefractive and Photodiffractive Properties of Holographic Thin Films Based on Bacteriorhodopsin Mrs Proceedings. 218. DOI: 10.1557/Proc-218-131  0.788
1990 Birge RR, Fleitz PA, Lawrence AF, Masthay MA, Zhang CF. Nonlinear Optical Properties of Bacteriorhodopsin: Assignment of Second Order Hyperpolarizabilities of Randomly Oriented Systems Using Two-Photon Spectroscopy Molecular Crystals and Liquid Crystals Incorporating Nonlinear Optics. 189: 107-122. DOI: 10.1080/00268949008037226  0.327
1990 Birge RR, Zhang C. Two‐photon double resonance spectroscopy of bacteriorhodopsin. Assignment of the electronic and dipolar properties of the low‐lying 1A*−g‐like and 1B*+u‐like π, π* states The Journal of Chemical Physics. 92: 7178-7195. DOI: 10.1063/1.458206  0.366
1988 Findsen LA, Bocian DF, Birge RR. A theoretical evaluation of the vinyl torsional potential in protoporphyrins The Journal of Chemical Physics. 88: 7588-7598. DOI: 10.1063/1.454323  0.318
1988 Schick GA, Lawrence AF, Birge RR. Biotechnology and molecular computing Trends in Biotechnology. 6: 159-163. DOI: 10.1016/0167-7799(88)90086-8  0.549
1987 Schick GA, Cooper TM, Holloway RA, Murray LP, Birge RR. Energy storage in the primary photochemical events of rhodopsin and isorhodopsin Biochemistry. 26: 2556-2562. PMID 3607033 DOI: 10.1021/Bi00383A022  0.623
1987 Lawrence AF, McDaniel JC, Chang DB, Birge RR. The nature of phonons and solitary waves in alpha-helical proteins. Biophysical Journal. 51: 785-93. PMID 3593874 DOI: 10.1016/S0006-3495(87)83405-7  0.307
1987 Birge RR, Findsen LA, Pierce BM. Molecular dynamics of the primary photochemical event in bacteriorhodopsin. Theoretical evidence for an excited singlet state assignment for the J intermediate Journal of the American Chemical Society. 109: 5041-5043. DOI: 10.1021/Ja00250A056  0.337
1987 Boldt NJ, Donohoe RJ, Birge RR, Bocian DF. Chlorophyll model compounds: effects of low symmetry on the resonance Raman spectra and normal mode descriptions of nickel(II) dihydroporphyrins Journal of the American Chemical Society. 109: 2284-2298. DOI: 10.1021/Ja00242A009  0.317
1987 Birge RR, Murray LP, Zidovetzki R, Knapp HM. Two-photon, carbon-13 and two-dimensional proton NMR spectroscopic studies of retinyl Schiff bases, protonated Schiff bases and Schiff base salts: evidence for a protonation induced .pi..pi.* excited state level ordering reversal Journal of the American Chemical Society. 109: 2090-2101. DOI: 10.1021/Ja00241A029  0.36
1986 Masthay MB, Findsen LA, Pierce BM, Bocian DF, Lindsey JS, Birge RR. A theoretical investigation of the one‐ and two‐photon properties of porphyrins The Journal of Chemical Physics. 84: 3901-3915. DOI: 10.1063/1.450827  0.378
1986 Birge RR. Two-photon spectroscopy of protein-bound chromophores Accounts of Chemical Research. 19: 138-146. DOI: 10.1021/Ar00125A003  0.313
1985 Birge RR, Murray LP, Pierce BM, Akita H, Balogh-Nair V, Findsen LA, Nakanishi K. Two-photon spectroscopy of locked-11-cis-rhodopsin: evidence for a protonated Schiff base in a neutral protein binding site. Proceedings of the National Academy of Sciences of the United States of America. 82: 4117-21. PMID 2987964 DOI: 10.1073/Pnas.82.12.4117  0.385
1985 Murray LP, Birge RR. Two-photon spectroscopy of the Schiff base of all-trans-retinal. Nature of the low-lying π π* singlet states Canadian Journal of Chemistry. 63: 1967-1971. DOI: 10.1139/V85-325  0.408
1984 CHANDRARATNA RAS, OKAMURA WH, BIRGE RR. ChemInform Abstract: 12-S-cis Conformationally Locked Retinoids: Thermal and Photochemical Interconversions Leading to New Geometric Isomers. Electronic Spectra of 12-S-cis Conformationally Locked Retinals. Chemischer Informationsdienst. 15. DOI: 10.1002/Chin.198427345  0.304
1983 Birge RR, Schick GA, Bocian DF. Calculation of molecular polarizabilities using a semiclassical Slater‐type orbital‐point dipole interaction (STOPDI) model The Journal of Chemical Physics. 79: 2256-2264. DOI: 10.1063/1.446075  0.61
1982 Pierce BM, Bennett JA, Birge RR. Two‐photon excitation spectroscopy of a substituted all‐trans hexatriene (iso‐tachysterol). Spectroscopic assignments of the low‐lying 1‘‘1Bu*+’’ and 2‘‘1Ag*−’’ ππ* states The Journal of Chemical Physics. 77: 6343-6344. DOI: 10.1063/1.443808  0.346
1982 Birge RR, Bennett JA, Hubbard LM, Fang HL, Pierce BM, Kliger DS, Leroi GE. Two-photon spectroscopy of all-trans-retinal. Nature of the low-lying singlet states Journal of the American Chemical Society. 104: 2519-2525. DOI: 10.1021/Ja00373A031  0.354
1982 Birge RR. [67] Energy levels of the visual chromophores by two-photon spectroscopy Methods in Enzymology. 88: 522-532. DOI: 10.1016/0076-6879(82)88070-1  0.326
1982 Goldbeck RA, Twarowski AJ, Russell EL, Rice JK, Birge RR, Switkes E, Kliger DS. Excited state absorption spectroscopy and state ordering in polyenes. II. α,ω-diphenylpolyenes The Journal of Chemical Physics. 77: 3319-3328. DOI: 10.1002/Chin.198252056  0.327
1981 Bocian DF, Schick GA, Hurd JK, Birge RR. Calculation of Raman intensities for the torsional vibrations of methylcyclopropane and propylene oxide The Journal of Chemical Physics. 76: 6454-6456. DOI: 10.1063/1.443010  0.616
1981 Bocian DF, Schick GA, Hurd KJ, Birge RR. Calculation of Raman intensities for the torsional vibrations of ethyl halides The Journal of Chemical Physics. 76: 4828-4833. DOI: 10.1063/1.442801  0.587
1981 Bocian DF, Schick GA, Birge RR. Calculation of Raman intensities for the ring-puckering vibrations of cyclopentene and 2,5-dihydrofuran The Journal of Chemical Physics. 75: 3215-3219. DOI: 10.1063/1.442494  0.628
1981 Bocian DF, Schick GA, Birge RR. Calculation of Raman intensities for the ring-puckering vibrations of 2,5-dihydropyrrole and trimethyleneimine. Electrical versus mechanical anharmonicity in asymmetric potential wells The Journal of Chemical Physics. 75: 2626-2634. DOI: 10.1063/1.442417  0.623
1981 Bocian DF, Schick GA, Birge RR. Calculation of Raman intensities for the ring-puckering vibrations of trimethylene oxide and cyclobutane. The importance of electrical anharmonicity The Journal of Chemical Physics. 74: 3660-3667. DOI: 10.1063/1.441592  0.621
1981 Hubbard LM, Bocian DF, Birge RR. The nature of the 1n.pi.* .rarw. S0 transition. 4. The first excited singlet state of acetaldehyde Journal of the American Chemical Society. 103: 3313-3320. DOI: 10.1021/Ja00402A016  0.318
1981 Myers AB, Birge RR. The ground-state dipole moments of all-trans- and 9-cis-retinal Journal of the American Chemical Society. 103: 1881-1885. DOI: 10.1021/Ja00398A001  0.321
1981 BENNETT JA, BIRGE RR. ChemInform Abstract: TWO-PHOTON SPECTROSCOPY OF DIPHENYLBUTADIENE. THE NATURE OF THE LOWEST-LYING 1AG*- ΠΠ* STATE Chemischer Informationsdienst. 12. DOI: 10.1002/Chin.198110046  0.304
1980 Bennett JA, Birge RR. Two‐photon spectroscopy of diphenylbutadiene. The nature of the lowest‐lying 1Ag*−ππ* state The Journal of Chemical Physics. 73: 4234-4246. DOI: 10.1063/1.440706  0.364
1980 Honig B, Dinur U, Birge RR, Ebrey TG. The isomer dependence of oscillator strengths in retinal and related molecules. Spectroscopic assignments Journal of the American Chemical Society. 102: 488-494. DOI: 10.1021/Ja00522A008  0.506
1978 Birge RR, Bennett JA, Pierce BM, Thomas TM. Two-photon spectroscopy of the visual chromophores. Evidence for a lowest excited 1Ag--like .pi..pi.* state in all-trans-retinol (vitamin A) Journal of the American Chemical Society. 100: 1533-1539. DOI: 10.1021/Ja00473A035  0.323
1976 Birge RR, Sullivan MJ, Kohler BE. The effect of temperature and solvent environment on the conformational stability of 11-cis-retinal Journal of the American Chemical Society. 98: 358-367. PMID 1245683 DOI: 10.1002/Chin.197615067  0.301
1975 Abram II, Auerbach RA, Birge RR, Kohler BE, Stevenson JM. Narrow-line fluorescence spectra of perylene as a function of excitation wavelength The Journal of Chemical Physics. 63: 2473-2478. DOI: 10.1063/1.431688  0.305
1975 Birge RR, Schulten K, Karplus M. Possible influence of a low-lying “covalent” excited state on the absorption spectrum and photoisomerization of 11-cis retinal Chemical Physics Letters. 31: 451-454. DOI: 10.1016/0009-2614(75)85062-7  0.568
1973 BIRGE RR, LEERMAKERS PA. ChemInform Abstract: GEOMETRIEN ANGEREGTER ZUSTAENDE VON EINFACH SUBSTITUIERTEN METHYLPROPENALEN 3. MITT. GEOMETRIE, SUBSTITUENTENWECHSELWIRKUNG FERMI-KORRELATION UND SPINBAHN-KOPPLUNG IM T1(N,PI(*)) Chemischer Informationsdienst. 4: no-no. DOI: 10.1002/Chin.197304091  0.595
1972 Birge RR, Leermakers PA. Nature of the n.far..pi.*transition. III. Excited-state geometries of the singly substituted methylpropenals. III. Geometry, substituent interaction, Fermi correlation, and spin-orbit coupling in T1(n,.pi.*) Journal of the American Chemical Society. 94: 8105-8117. DOI: 10.1021/Ja00778A029  0.635
1972 BIRGE RR, PRINGLE WC, LEERMAKERS PA. ChemInform Abstract: GEOMETRIEN DES ANGEREGTEN ZUSTANDS MONOSUBSTITUIERTER METHYLPROPENALE 1. MITT. UND 2. MITT. ANALYSE DES SCHWINGUNGSELEKTRONENBANDESNSYST. DES S(1)(N,PI(*)) Chemischer Informationsdienst. 3. DOI: 10.1002/Chin.197208073  0.596
1971 Birge RR, Leermakers PA. Excited-state geometries of the singly substituted methylpropenals. II. Bond order reversal and substituent interaction in S1(n,π*) Journal of the American Chemical Society. 93: 6726-6733. DOI: 10.1021/Ja00754A002  0.653
1971 Birge RR, Pringle WC, Leermakers PA. Excited-state geometries of the singly substituted methylpropenals. I. Vibrational-electronic analysis of S1(n,.pi.*) Journal of the American Chemical Society. 93: 6715-6726. DOI: 10.1021/Ja00754A001  0.649
1971 Birge RR, Pringle WC, Leermakers PA. Excited-state geometries of the singly substituted methylpropenals. I. Vibrational-electronic analysis of S1 (n,π*) Journal of the American Chemical Society. 93: 6715-6726.  0.618
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