Ziad Ganim, Ph.D. - Publications

Affiliations: 
2014- Chemistry Yale University, New Haven, CT 
Website:
ganim.yale.edu

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Parobek A, Black JW, Kamenetska M, Ganim Z. Force-detected nanoscale absorption spectroscopy in water at room temperature using an optical trap. The Journal of Chemical Physics. 148: 144201. PMID 29655351 DOI: 10.1063/1.5017853  1
2017 Ganim Z, Rief M. Mechanically switching single-molecule fluorescence of GFP by unfolding and refolding. Proceedings of the National Academy of Sciences of the United States of America. 114: 11052-11056. PMID 29073015 DOI: 10.1073/Pnas.1704937114  1
2017 Black J, Kamenetska M, Ganim Z. An Optical Tweezers Platform for Single Molecule Force Spectroscopy in Organic Solvents. Nano Letters. PMID 28972764 DOI: 10.1021/Acs.Nanolett.7B02413  1
2017 Black J, Kamenetska M, Ganim Z. An Optical Tweezers Platform for Single Molecule Force Spectroscopy in Organic Solvents. Nano Letters. PMID 28972764 DOI: 10.1021/acs.nanolett.7b02413  0.88
2017 Ganim Z, Jones KC, Tokmakoff A. Correction: Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 28678231 DOI: 10.1039/C7Cp90151H  1
2017 Ganim Z, Jones KC, Tokmakoff A. Correction: Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy Phys Chem Chem Phys.. 19: 18773-18773. PMID 28678231 DOI: 10.1039/c7cp90151h  1
2017 Ganim Z, Rief M. Mechanically switching single-molecule fluorescence of GFP by unfolding and refolding Proceedings of the National Academy of Sciences of the United States of America 1
2016 Huang J, Parobek A, Ganim Z.. Octave-spanning mid-infrared pulses by plasma generation in air pumped with an Yb:KGW source. Optics Letters. 41: 4855-4858. PMID 27805634 DOI: 10.1364/OL.41.004855  1
2013 Ganim Z. Single-molecule vibrational spectroscopy adds structural resolution to the optical trap. Biophysical Journal. 104: 4-5. PMID 23332052 DOI: 10.1016/J.Bpj.2012.09.044  1
2012 Jones KC, Ganim Z, Peng CS, Tokmakoff A. Transient two-dimensional spectroscopy with linear absorption corrections applied to temperature-jump two-dimensional infrared Journal of the Optical Society of America B: Optical Physics. 29: 118-129. DOI: 10.1364/Josab.29.000118  1
2011 Roy S, Lessing J, Meisl G, Ganim Z, Tokmakoff A, Knoester J, Jansen TL. Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline. The Journal of Chemical Physics. 135: 234507. PMID 22191886 DOI: 10.1063/1.3665417  1
2011 Ganim Z, Tokmakoff A, Vaziri A. Vibrational excitons in ionophores: Experimental probes for quantum coherence-assisted ion transport and selectivity in ion channels New Journal of Physics. 13. DOI: 10.1088/1367-2630/13/11/113030  1
2010 Smith AW, Lessing J, Ganim Z, Peng CS, Tokmakoff A, Roy S, Jansen TL, Knoester J. Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations. The Journal of Physical Chemistry. B. 114: 10913-24. PMID 20690697 DOI: 10.1021/Jp104017H  1
2010 Ganim Z, Jones KC, Tokmakoff A. Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy. Physical Chemistry Chemical Physics : Pccp. 12: 3579-88. PMID 20336256 DOI: 10.1039/B923515A  1
2009 Jones KC, Ganim Z, Tokmakoff A. Heterodyne-detected dispersed vibrational echo spectroscopy. The Journal of Physical Chemistry. A. 113: 14060-6. PMID 19938867 DOI: 10.1021/Jp906256S  1
2009 Deflores LP, Ganim Z, Nicodemus RA, Tokmakoff A. Amide I'-II' 2D IR spectroscopy provides enhanced protein secondary structural sensitivity. Journal of the American Chemical Society. 131: 3385-91. PMID 19256572 DOI: 10.1021/Ja8094922  1
2008 Ganim Z, Chung HS, Smith AW, Deflores LP, Jones KC, Tokmakoff A. Amide I two-dimensional infrared spectroscopy of proteins. Accounts of Chemical Research. 41: 432-41. PMID 18288813 DOI: 10.1021/Ar700188N  1
2007 Chung HS, Ganim Z, Jones KC, Tokmakoff A. Transient 2D IR spectroscopy of ubiquitin unfolding dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 14237-42. PMID 17551015 DOI: 10.1073/Pnas.0700959104  1
2007 Smith AW, Chung HS, Ganim Z, Tokmakoff A. Multidimensional IR spectroscopy of site-specific hairpin folding Springer Series in Chemical Physics. 88: 350-352. DOI: 10.1007/978-3-540-68781-8-113  1
2006 DeFlores LP, Ganim Z, Ackley SF, Chung HS, Tokmakoff A. The anharmonic vibrational potential and relaxation pathways of the amide I and II modes of N-methylacetamide. The Journal of Physical Chemistry. B. 110: 18973-80. PMID 16986892 DOI: 10.1021/Jp0603334  1
2006 Ganim Z, Tokmakoff A. Spectral signatures of heterogeneous protein ensembles revealed by MD Simulations of 2DIR spectra. Biophysical Journal. 91: 2636-46. PMID 16844758 DOI: 10.1529/Biophysj.106.088070  1
2005 Smith AW, Chung HS, Ganim Z, Tokmakoff A. Residual native structure in a thermally denatured beta-hairpin. The Journal of Physical Chemistry. B. 109: 17025-7. PMID 16853169 DOI: 10.1021/Jp053949M  1
2005 Chung HS, Khalil M, Smith AW, Ganim Z, Tokmakoff A. Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin. Proceedings of the National Academy of Sciences of the United States of America. 102: 612-7. PMID 15630083 DOI: 10.1073/Pnas.0408646102  1
2004 Yan ECY, Ganim Z, Kazmi MA, Chang BSW, Sakmar TP, Mathies RA. Resonance raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct Biochemistry. 43: 10867-10876. PMID 15323547 DOI: 10.1021/Bi0400148  1
2004 Chung HS, Khalil M, Smith AW, Ganim Z, Tokmakoff A. Thermal denaturing of proteins: Equilibrium and transient studies using nonlinear infrared probes Springer Series in Chemical Physics. 79: 551-553. DOI: 10.1007/3-540-27213-5_168  1
2003 Yan ECY, Kazmi MA, Ganim Z, Hou JM, Pan D, Chang BSW, Sakmar TP, Mathies RA. Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin Proceedings of the National Academy of Sciences of the United States of America. 100: 9262-9267. PMID 12835420 DOI: 10.1073/Pnas.1531970100  1
2002 Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA. Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate. Journal of the American Chemical Society. 124: 4857-64. PMID 11971736 DOI: 10.1021/Ja012666E  1
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