Allison A. Henry, Ph.D. - Related publications

Affiliations: 
2005 Scripps Research Institute, La Jolla, La Jolla, CA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Morihiro K, Moriyama Y, Nemoto Y, Osumi H, Okamoto A. Unnatural Base Pair Enables Alphabet-Expanded DNA Self-Assembly. Journal of the American Chemical Society. 143: 14207-14217. PMID 34450012 DOI: 10.1021/jacs.1c05393   
2021 Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. DNA interference states of the hypercompact CRISPR-CasΦ effector. Nature Structural & Molecular Biology. 28: 652-661. PMID 34381246 DOI: 10.1038/s41594-021-00632-3   
2021 Guo Y, Tang J, Yao C, Yang D. Multimodules integrated functional DNA nanomaterials for intelligent drug delivery. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1753. PMID 34463046 DOI: 10.1002/wnan.1753   
2021 Favalli N, Bassi G, Bianchi D, Scheuermann J, Neri D. Large screening of DNA-compatible reaction conditions for Suzuki and Sonogashira cross-coupling reactions and for reverse amide bond formation. Bioorganic & Medicinal Chemistry. 41: 116206. PMID 34038862 DOI: 10.1016/j.bmc.2021.116206   
2021 Wang GA, Xu J, Traynor SM, Chen H, Eljabu F, Wu X, Yan H, Li F. DNA Balance for Native Characterization of Chemically Modified DNA. Journal of the American Chemical Society. PMID 34404208 DOI: 10.1021/jacs.1c05236   
2021 Dai Z, Li J, Lin Y, Wang Z, Huang Y. Facile Construction of a Solely-DNA-Based System for Targeted Delivery of Nucleic Acids. Nanomaterials (Basel, Switzerland). 11. PMID 34443796 DOI: 10.3390/nano11081967   
2021 Green MR, Sambrook J. A Guide to Cloning the Products of Polymerase Chain Reactions. Cold Spring Harbor Protocols. 2021: pdb.top101345. PMID 34470865 DOI: 10.1101/pdb.top101345   
2021 Kropp HM, Ludmann S, Diederichs K, Betz K, Marx A. Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase. Chembiochem : a European Journal of Chemical Biology. PMID 34486208 DOI: 10.1002/cbic.202100306   
2021 Zheng LL, Li JZ, Li YX, Gao JB, Dong JX, Gao ZF. pH-Responsive DNA Motif: From Rational Design to Analytical Applications. Frontiers in Chemistry. 9: 732770. PMID 34458239 DOI: 10.3389/fchem.2021.732770   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Wong KL, Liu J. Factors and methods to modulate DNA hybridization kinetics. Biotechnology Journal. e2000338. PMID 34411451 DOI: 10.1002/biot.202000338   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Serrano-Chacón I, Mir B, Escaja N, González C. Structure of i-Motif/Duplex Junctions at Neutral pH. Journal of the American Chemical Society. PMID 34370473 DOI: 10.1021/jacs.1c04679   
2021 Kabza AM, Kundu N, Zhong W, Sczepanski JT. Integration of chemically modified nucleotides with DNA strand displacement reactions for applications in living systems. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1743. PMID 34328690 DOI: 10.1002/wnan.1743   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Branzei D, Szakal B. DNA helicases in homologous recombination repair. Current Opinion in Genetics & Development. 71: 27-33. PMID 34271541 DOI: 10.1016/j.gde.2021.06.009   
2021 Kuznetsova AA, Senchurova SI, Ishchenko AA, Saparbaev M, Fedorova OS, Kuznetsov NA. Common Kinetic Mechanism of Abasic Site Recognition by Structurally Different Apurinic/Apyrimidinic Endonucleases. International Journal of Molecular Sciences. 22. PMID 34445579 DOI: 10.3390/ijms22168874   
2021 Berger M, Wortmann L, Buchgraber P, Lücking U, Zitzmann-Kolbe S, Wengner AM, Bader B, Bömer U, Briem H, Eis K, Rehwinkel H, Bartels F, Moosmayer D, Eberspächer U, Lienau P, et al. BAY-8400: A Novel Potent and Selective DNA-PK Inhibitor which Shows Synergistic Efficacy in Combination with Targeted Alpha Therapies. Journal of Medicinal Chemistry. PMID 34428039 DOI: 10.1021/acs.jmedchem.1c00762   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Wee WA, Yum JH, Hirashima S, Sugiyama H, Park S. Synthesis and application of a F-labeled fluorescent nucleoside as a dual-mode probe for i-motif DNAs. Rsc Chemical Biology. 2: 876-882. PMID 34458815 DOI: 10.1039/d1cb00020a   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Kang K, Ma Y, Sadakane K. Direct visualization of local activities of long DNA strands via image-time correlation. European Biophysics Journal : Ebj. PMID 34499211 DOI: 10.1007/s00249-021-01570-0   
2021 Lv Z, Zhu Y, Li F. DNA Functional Nanomaterials for Controlled Delivery of Nucleic Acid-Based Drugs. Frontiers in Bioengineering and Biotechnology. 9: 720291. PMID 34490226 DOI: 10.3389/fbioe.2021.720291   
2021 Housh K, Jha JS, Yang Z, Haldar T, Johnson KM, Yin J, Wang Y, Gates KS. Formation and Repair of an Interstrand DNA Cross-Link Arising from a Common Endogenous Lesion. Journal of the American Chemical Society. PMID 34516735 DOI: 10.1021/jacs.1c06926   
2021 Zhao F, Kim W, Gao H, Liu C, Zhang Y, Chen Y, Deng M, Zhou Q, Huang J, Hu Q, Chen SH, Nowsheen S, Kloeber JA, Qin B, Yin P, et al. ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection. Nature Cell Biology. PMID 34354233 DOI: 10.1038/s41556-021-00723-9   
2021 Gao X, Hong Y, Ye F, Inman JT, Wang MD. Torsional Stiffness of Extended and Plectonemic DNA. Physical Review Letters. 127: 028101. PMID 34296898 DOI: 10.1103/PhysRevLett.127.028101   
2021 Dai Y, Yuan BF, Feng YQ. Quantification and mapping of DNA modifications. Rsc Chemical Biology. 2: 1096-1114. PMID 34458826 DOI: 10.1039/d1cb00022e   
2021 Ge J, Ngo LP, Kaushal S, Tay IJ, Thadhani E, Kay JE, Mazzucato P, Chow DN, Fessler JL, Weingeist DM, Sobol RW, Samson LD, Floyd SR, Engelward BP. CometChip enables parallel analysis of multiple DNA repair activities. Dna Repair. 106: 103176. PMID 34365116 DOI: 10.1016/j.dnarep.2021.103176   
2021 Brugger C, Deaconescu AM. A Gel-Based Assay for Probing Protein Translocation on dsDNA. Bio-Protocol. 11: e4094. PMID 34395731 DOI: 10.21769/BioProtoc.4094   
2021 Lin T, Zhang L, Wu M, Jiang D, Li Z, Yang Z. Repair of Hypoxanthine in DNA Revealed by DNA Glycosylases and Endonucleases From Hyperthermophilic Archaea. Frontiers in Microbiology. 12: 736915. PMID 34531846 DOI: 10.3389/fmicb.2021.736915   
2021 Sarkar S, Dey U, Khohliwe TB, Yella VR, Kumar A. Analysis of nucleoid-associated protein-binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis. Febs Letters. PMID 34387867 DOI: 10.1002/1873-3468.14178   
2021 Gao Y, Zheng Y, Sanche L. Low-Energy Electron Damage to Condensed-Phase DNA and Its Constituents. International Journal of Molecular Sciences. 22. PMID 34360644 DOI: 10.3390/ijms22157879   
2021 Xiao R, Wang S, Han R, Li Z, Gabel C, Mukherjee IA, Chang L. Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition. Molecular Cell. PMID 34450043 DOI: 10.1016/j.molcel.2021.07.043   
2021 Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. PMID 34352078 DOI: 10.1093/nar/gkab641   
2021 Luchian T, Mereuta L, Park Y, Asandei A, Schiopu I. Single-molecule, hybridization-based strategies for short nucleic acids detection and recognition with nanopores. Proteomics. e2100046. PMID 34275186 DOI: 10.1002/pmic.202100046   
2021 Puliatti L, Handt O, Taylor D. The level of DNA an individual transfers to untouched items in their immediate surroundings. Forensic Science International. Genetics. 54: 102561. PMID 34303991 DOI: 10.1016/j.fsigen.2021.102561   
2021 Swenson CS, Lackey HH, Reece EJ, Harris JM, Heemstra JM, Peterson EM. Evaluating the effect of ionic strength on PNA:DNA duplex formation kinetics. Rsc Chemical Biology. 2: 1249-1256. PMID 34458838 DOI: 10.1039/d1cb00025j   
2021 Sánchez-González Á, Bandeira NAG, Ortiz de Luzuriaga I, Martins FF, Elleuchi S, Jarraya K, Lanuza J, Lopez X, Calhorda MJ, Gil A. New Insights on the Interaction of Phenanthroline Based Ligands and Metal Complexes and Polyoxometalates with Duplex DNA and G-Quadruplexes. Molecules (Basel, Switzerland). 26. PMID 34443326 DOI: 10.3390/molecules26164737   
2021 Spencer DM, Reyna AG, Pisetsky DS. The Binding of Monoclonal and Polyclonal Anti-Z-DNA Antibodies to DNA of Various Species Origin. International Journal of Molecular Sciences. 22. PMID 34445637 DOI: 10.3390/ijms22168931   
2021 Tse DH, Becker NA, Young RT, Olson WK, Peters JP, Schwab TL, Clark KJ, Maher LJ. Designed architectural proteins that tune DNA looping in bacteria. Nucleic Acids Research. PMID 34478548 DOI: 10.1093/nar/gkab759   
2021 Mukherjee I, Ghosh A, Purkayastha P. Förster Resonance Energy Transfer from Carbon Nanoparticles to a DNA-Bound Compound: A Method to Detect the Nature of Binding. The Journal of Physical Chemistry. B. PMID 34465085 DOI: 10.1021/acs.jpcb.1c05149   
2021 Pan Q, Wang L, Liu Y, Li M, Zhang Y, Peng W, Deng T, Peng ML, Jiang JQ, Tang J, Wang J, Duan HX, Fan SS. Knockdown of POLQ interferes the development and progression of hepatocellular carcinoma through regulating cell proliferation, apoptosis and migration. Cancer Cell International. 21: 482. PMID 34517891 DOI: 10.1186/s12935-021-02178-2   
2021 Piett CG, Pecen TJ, Laverty DJ, Nagel ZD. Large-scale preparation of fluorescence multiplex host cell reactivation (FM-HCR) reporters. Nature Protocols. PMID 34363069 DOI: 10.1038/s41596-021-00577-3   
2021 Bhowmik D, Du M, Tian Y, Ma S, Wu J, Chen Z, Yin Q, Zhu F. Cooperative DNA binding mediated by KicGAS/ORF52 oligomerization allows inhibition of DNA-induced phase separation and activation of cGAS. Nucleic Acids Research. PMID 34387695 DOI: 10.1093/nar/gkab689   
2021 Gür FN, Kempter S, Schueder F, Sikeler C, Urban MJ, Jungmann R, Nickels PC, Liedl T. Double- to Single-Strand Transition Induces Forces and Motion in DNA Origami Nanostructures. Advanced Materials (Deerfield Beach, Fla.). e2101986. PMID 34337805 DOI: 10.1002/adma.202101986   
2021 Newton MD, Fairbanks SD, Thomas JA, Rueda DS. A Minimal Load-and-Lock Ru Luminescent DNA Probe. Angewandte Chemie (International Ed. in English). PMID 34378843 DOI: 10.1002/anie.202108077   
2021 Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000