Kebing Yu, Ph.D. - Publications

Affiliations: 
2010 Brown University, Providence, RI 
Area:
Bioorganic and Biophysical Chemistry

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cho KF, Ma TP, Rose CM, Kirkpatrick DS, Yu K, Blake RA. Chaperone mediated detection of small molecule target binding in cells. Nature Communications. 11: 465. PMID 31974362 DOI: 10.1038/S41467-019-14033-0  0.418
2019 Oberbeck N, Pham VC, Webster JD, Reja R, Huang CS, Zhang Y, Roose-Girma M, Warming S, Li Q, Birnberg A, Wong W, Sandoval W, Kőműves LG, Yu K, Dugger DL, et al. The RIPK4-IRF6 signalling axis safeguards epidermal differentiation and barrier function. Nature. PMID 31578523 DOI: 10.1038/S41586-019-1615-3  0.324
2018 Anania VG, Yu K, Pingitore F, Li Q, Rose CM, Liu P, Sandoval W, Herman AE, Lill JR, Mathews WR. Discovery and qualification of candidate urinary biomarkers of disease activity in lupus nephritis. Journal of Proteome Research. PMID 30525646 DOI: 10.1021/Acs.Jproteome.8B00874  0.332
2018 Hewings DS, Heideker J, Ma TP, AhYoung AP, El Oualid F, Amore A, Costakes GT, Kirchhofer D, Brasher B, Pillow T, Popovych N, Maurer T, Schwerdtfeger C, Forrest WF, Yu K, et al. Reactive-site-centric chemoproteomics identifies a distinct class of deubiquitinase enzymes. Nature Communications. 9: 1162. PMID 29563501 DOI: 10.1038/S41467-018-03511-6  0.349
2018 Goncharov T, Hedayati S, Mulvihill MM, Izrael-Tomasevic A, Zobel K, Jeet S, Fedorova AV, Eidenschenk C, deVoss J, Yu K, Shaw AS, Kirkpatrick DS, Fairbrother WJ, Deshayes K, Vucic D. Disruption of XIAP-RIP2 Association Blocks NOD2-Mediated Inflammatory Signaling. Molecular Cell. 69: 551-565.e7. PMID 29452636 DOI: 10.1016/J.Molcel.2018.01.016  0.464
2018 Wertz I, Kategaya L, Lello PD, Rouge L, Pastor R, Clark KR, Drummond J, Kleinheinz T, Lin E, Upton J, Prakash S, Heideker J, McCleland M, Ritorto MS, Alessi DR, ... ... Yu K, et al. Abstract SY23-03: Development and mechanistic characterization of USP7 deubiquitinase inhibitors Cancer Research. 78. DOI: 10.1158/1538-7445.Am2018-Sy23-03  0.38
2017 Kategaya L, Di Lello P, Rougé L, Pastor R, Clark KR, Drummond J, Kleinheinz T, Lin E, Upton JP, Prakash S, Heideker J, McCleland M, Ritorto MS, Alessi DR, Trost M, ... ... Yu K, et al. USP7 small-molecule inhibitors interfere with ubiquitin binding. Nature. PMID 29045385 DOI: 10.1038/Nature24006  0.375
2016 de Almagro MC, Goncharov T, Izrael-Tomasevic A, Duttler S, Kist M, Varfolomeev E, Wu X, Lee WP, Murray J, Webster JD, Yu K, Kirkpatrick DS, Newton K, Vucic D. Coordinated ubiquitination and phosphorylation of RIP1 regulates necroptotic cell death. Cell Death and Differentiation. PMID 27518435 DOI: 10.1038/Cdd.2016.78  0.482
2016 Anania VG, Yu K, Gnad F, Pferdehirt RR, Li H, Ma T, Jeon D, Fortelny N, Forrest W, Ashkenazi A, Overall CM, Lill JR. Uncovering a dual regulatory role for caspases during endoplasmic reticulum stress-induced cell death. Molecular & Cellular Proteomics : McP. PMID 27125827 DOI: 10.1074/Mcp.M115.055376  0.313
2015 Vartanian S, Ma TP, Lee J, Haverty PM, Kirkpatrick DS, Yu K, Stokoe D. Application of mass spectrometry profiling to establish brusatol as an inhibitor of global protein synthesis. Molecular & Cellular Proteomics : McP. PMID 26711467 DOI: 10.1074/Mcp.M115.055509  0.407
2015 Wertz IE, Newton K, Seshasayee D, Kusam S, Lam C, Zhang J, Popovych N, Helgason E, Schoeffler A, Jeet S, Ramamoorthi N, Kategaya L, Newman RJ, Horikawa K, Dugger D, ... ... Yu K, et al. Phosphorylation and linear ubiquitin direct A20 inhibition of inflammation. Nature. 528: 370-5. PMID 26649818 DOI: 10.1038/Nature16165  0.329
2015 Yu K, Phu L, Varfolomeev E, Bustos D, Vucic D, Kirkpatrick DS. Immunoaffinity enrichment coupled to quantitative mass spectrometry reveals ubiquitin-mediated signaling events. Journal of Molecular Biology. 427: 2121-34. PMID 25861760 DOI: 10.1016/J.Jmb.2015.03.018  0.486
2015 Varfolomeev E, Izrael-Tomasevic A, Yu K, Bustos D, Goncharov T, Belmont LD, Masselot A, Bakalarski CE, Kirkpatrick DS, Vucic D. Ubiquitination profiling identifies sensitivity factors for IAP antagonist treatment. The Biochemical Journal. 466: 45-54. PMID 25423073 DOI: 10.1042/Bj20141195  0.431
2014 Wimuttisuk W, West M, Davidge B, Yu K, Salomon A, Singer JD. Novel Cul3 binding proteins function to remodel E3 ligase complexes. Bmc Cell Biology. 15: 28. PMID 25011449 DOI: 10.1186/1471-2121-15-28  0.65
2013 Sanderson TH, Mahapatra G, Pecina P, Ji Q, Yu K, Sinkler C, Varughese A, Kumar R, Bukowski MJ, Tousignant RN, Salomon AR, Lee I, Hüttemann M. Cytochrome C is tyrosine 97 phosphorylated by neuroprotective insulin treatment. Plos One. 8: e78627. PMID 24223835 DOI: 10.1371/Journal.Pone.0078627  0.655
2013 Zhuang G, Yu K, Jiang Z, Chung A, Yao J, Ha C, Toy K, Soriano R, Haley B, Blackwood E, Sampath D, Bais C, Lill JR, Ferrara N. Phosphoproteomic analysis implicates the mTORC2-FoxO1 axis in VEGF signaling and feedback activation of receptor tyrosine kinases. Science Signaling. 6: ra25. PMID 23592840 DOI: 10.1126/Scisignal.2003572  0.435
2013 Bentley C, Jurinka SS, Kljavin NM, Vartanian S, Ramani SR, Gonzalez LC, Yu K, Modrusan Z, Du P, Bourgon R, Neve RM, Stokoe D. A requirement for wild-type Ras isoforms in mutant KRas-driven signalling and transformation. The Biochemical Journal. 452: 313-20. PMID 23496764 DOI: 10.1042/Bj20121578  0.338
2012 Cao L, Ding Y, Hung N, Yu K, Ritz A, Raphael BJ, Salomon AR. Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells. Plos One. 7: e46725. PMID 23071622 DOI: 10.1371/Journal.Pone.0046725  0.751
2012 Pham VC, Pitti R, Anania VG, Bakalarski CE, Bustos D, Jhunjhunwala S, Phung QT, Yu K, Forrest WF, Kirkpatrick DS, Ashkenazi A, Lill JR. Complementary proteomic tools for the dissection of apoptotic proteolysis events. Journal of Proteome Research. 11: 2947-54. PMID 22432722 DOI: 10.1021/Pr300035K  0.439
2012 O'Brien XM, Heflin KE, Lavigne LM, Yu K, Kim M, Salomon AR, Reichner JS. Lectin site ligation of CR3 induces conformational changes and signaling. The Journal of Biological Chemistry. 287: 3337-48. PMID 22158618 DOI: 10.1074/Jbc.M111.298307  0.65
2011 Demirkan G, Yu K, Boylan JM, Salomon AR, Gruppuso PA. Phosphoproteomic profiling of in vivo signaling in liver by the mammalian target of rapamycin complex 1 (mTORC1). Plos One. 6: e21729. PMID 21738781 DOI: 10.1371/Journal.Pone.0021729  0.714
2010 Agrawal P, Yu K, Salomon AR, Sedivy JM. Proteomic profiling of Myc-associated proteins. Cell Cycle (Georgetown, Tex.). 9: 4908-21. PMID 21150319 DOI: 10.4161/Cc.9.24.14199  0.683
2010 Jianu R, Yu K, Cao L, Nguyen V, Salomon AR, Laidlaw DH. Visual integration of quantitative proteomic data, pathways, and protein interactions. Ieee Transactions On Visualization and Computer Graphics. 16: 609-20. PMID 20467059 DOI: 10.1109/Tvcg.2009.106  0.722
2010 Yu K, Salomon AR. HTAPP: high-throughput autonomous proteomic pipeline. Proteomics. 10: 2113-22. PMID 20336676 DOI: 10.1002/Pmic.200900159  0.655
2009 Yu K, Salomon AR. PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information. Proteomics. 9: 5350-8. PMID 19834895 DOI: 10.1002/Pmic.200900119  0.658
2009 Nguyen V, Cao L, Lin JT, Hung N, Ritz A, Yu K, Jianu R, Ulin SP, Raphael BJ, Laidlaw DH, Brossay L, Salomon AR. A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation. Molecular & Cellular Proteomics : McP. 8: 2418-31. PMID 19605366 DOI: 10.1074/Mcp.M800307-Mcp200  0.755
2009 Yu K, Sabelli A, DeKeukelaere L, Park R, Sindi S, Gatsonis CA, Salomon A. Integrated platform for manual and high-throughput statistical validation of tandem mass spectra. Proteomics. 9: 3115-25. PMID 19526561 DOI: 10.1002/Pmic.200800899  0.644
2009 Lee I, Salomon AR, Yu K, Samavati L, Pecina P, Pecinova A, Hüttemann M. Isolation of regulatory-competent, phosphorylated cytochrome C oxidase. Methods in Enzymology. 457: 193-210. PMID 19426869 DOI: 10.1016/S0076-6879(09)05011-3  0.712
2008 Yu H, Lee I, Salomon AR, Yu K, Hüttemann M. Mammalian liver cytochrome c is tyrosine-48 phosphorylated in vivo, inhibiting mitochondrial respiration. Biochimica Et Biophysica Acta. 1777: 1066-71. PMID 18471988 DOI: 10.1016/J.Bbabio.2008.04.023  0.684
2007 Nühse T, Yu K, Salomon A. Isolation of phosphopeptides by immobilized metal ion affinity chromatography. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 18.13. PMID 18265394 DOI: 10.1002/0471142727.Mb1813S77  0.714
2007 Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR. Quantitative time-resolved phosphoproteomic analysis of mast cell signaling. Journal of Immunology (Baltimore, Md. : 1950). 179: 5864-76. PMID 17947660 DOI: 10.4049/Jimmunol.179.9.5864  0.748
2006 Lee I, Salomon AR, Yu K, Doan JW, Grossman LI, Hüttemann M. New prospects for an old enzyme: mammalian cytochrome c is tyrosine-phosphorylated in vivo. Biochemistry. 45: 9121-8. PMID 16866357 DOI: 10.1021/Bi060585V  0.681
2006 Cao L, Yu K, Salomon AR. Phosphoproteomic analysis of lymphocyte signaling. Advances in Experimental Medicine and Biology. 584: 277-88. PMID 16802613 DOI: 10.1007/0-387-34132-3_19  0.747
2003 Yowe D, Weich N, Prabhudas M, Poisson L, Errada P, Kapeller R, Yu K, Faron L, Shen M, Cleary J, Wilkie TM, Gutierrez-Ramos C, Hodge MR. RGS18 is a myeloerythroid lineage-specific regulator of G-protein-signalling molecule highly expressed in megakaryocytes. The Biochemical Journal. 359: 109-18. PMID 11563974 DOI: 10.1042/0264-6021:3590109  0.314
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