| Year |
Citation |
Score |
| 2024 |
Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye IM, Gomis J, Ndiop M, Sene D, Faye Paye M, MacInnis BL, ... ... Sabeti PC, et al. Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. Nature Communications. 15: 747. PMID 38272885 DOI: 10.1038/s41467-024-44800-7 |
0.543 |
|
| 2023 |
Normandin E, Triana S, Raju SS, Lan TCT, Lagerborg K, Rudy M, Adams GC, DeRuff KC, Logue J, Liu D, Strebinger D, Rao A, Messer KS, Sacks M, Adams RD, ... ... Sabeti PC, et al. Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses. Cell Genomics. 3: 100440. PMID 38169842 DOI: 10.1016/j.xgen.2023.100440 |
0.309 |
|
| 2023 |
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, ... ... Sabeti PC, et al. Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. Nature Medicine. PMID 37946059 DOI: 10.1038/s41591-023-02684-y |
0.468 |
|
| 2023 |
Specht IOA, Petros BA, Moreno GK, Brock-Fisher T, Krasilnikova LA, Schifferli M, Yang K, Cronan P, Glennon O, Schaffner SF, Park DJ, MacInnis BL, Ozonoff A, Fry B, Mitzenmacher MD, ... ... Sabeti PC, et al. Inferring Viral Transmission Pathways from Within-Host Variation. Medrxiv : the Preprint Server For Health Sciences. PMID 37873325 DOI: 10.1101/2023.10.14.23297039 |
0.558 |
|
| 2023 |
Weingarten-Gabbay S, Bauer MR, Stanton AC, Klaeger S, Verzani EK, López D, Clauser KR, Carr SA, Abelin JG, Rice CM, Sabeti PC. Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling. Biorxiv : the Preprint Server For Biology. PMID 37808651 DOI: 10.1101/2023.09.26.559641 |
0.326 |
|
| 2023 |
Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye I, Gomis J, Ndiop M, Sene D, Paye MF, MacInnis B, ... ... Sabeti PC, et al. Improving diagnosis of non-malarial fevers in Senegal: and the contribution of tick-borne bacteria. Medrxiv : the Preprint Server For Health Sciences. PMID 37662407 DOI: 10.1101/2023.08.24.23294564 |
0.535 |
|
| 2023 |
Oguzie JU, Petros BA, Oluniyi PE, Mehta SB, Eromon PE, Nair P, Adewale-Fasoro O, Ifoga PD, Odia I, Pastusiak A, Gbemisola OS, Aiyepada JO, Uyigue EA, Edamhande AP, Blessing O, ... ... Sabeti PC, et al. Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria. Nature Communications. 14: 4693. PMID 37542071 DOI: 10.1038/s41467-023-40247-4 |
0.564 |
|
| 2023 |
McMinn RJ, Langsjoen RM, Bombin A, Robich RM, Ojeda E, Normandin E, Goethert HK, Lubelczyk CB, Schneider E, Cosenza D, Meagher M, Prusinski MA, Sabeti PC, Smith RP, Telford SR, et al. Phylodynamics of deer tick virus in North America. Virus Evolution. 9: vead008. PMID 36846826 DOI: 10.1093/ve/vead008 |
0.312 |
|
| 2023 |
Adams G, Moreno GK, Petros BA, Uddin R, Levine Z, Kotzen B, Messer KS, Dobbins ST, DeRuff KC, Loreth CM, Brock-Fisher T, Schaffner SF, Chaluvadi S, Kanjilal S, Luban J, ... ... Sabeti PC, et al. Viral Lineages in the 2022 RSV Surge in the United States. The New England Journal of Medicine. PMID 36812457 DOI: 10.1056/NEJMc2216153 |
0.448 |
|
| 2023 |
Normandin E, Rudy M, Barkas N, Schaffner SF, Levine Z, Padera RF, Babadi M, Mukerji SS, Park DJ, MacInnis BL, Siddle KJ, Sabeti PC, Solomon IH. High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection. Nature Communications. 14: 574. PMID 36732505 DOI: 10.1038/s41467-022-34256-y |
0.774 |
|
| 2023 |
Adams G, Moreno GK, Petros BA, Uddin R, Levine Z, Kotzen B, Messer K, Dobbins ST, DeRuff KC, Loreth C, Brock-Fisher T, Schaffner SF, Chaluvadi S, Kanjilal S, Luban J, ... ... Sabeti P, et al. The 2022 RSV surge was driven by multiple viral lineages. Medrxiv : the Preprint Server For Health Sciences. PMID 36656774 DOI: 10.1101/2023.01.04.23284195 |
0.556 |
|
| 2022 |
Turbett SE, Tomkins-Tinch CH, Anahtar MN, Dugdale CM, Hyle EP, Shenoy ES, Shaw B, Egbuonu K, Bowman KA, Zachary KC, Adams GC, Hooper DC, Ryan ET, LaRocque RC, Bassett IV, ... ... Sabeti PC, et al. Distinguishing SARS-CoV-2 persistence and reinfection: A retrospective cohort study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 36268576 DOI: 10.1093/cid/ciac830 |
0.306 |
|
| 2022 |
Petros BA, Paull JS, Tomkins-Tinch CH, Loftness BC, DeRuff KC, Nair P, Gionet GL, Benz A, Brock-Fisher T, Hughes M, Yurkovetskiy L, Mulaudzi S, Leenerman E, Nyalile T, Moreno GK, ... ... Sabeti PC, et al. Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework. Med (New York, N.Y.). PMID 36198312 DOI: 10.1016/j.medj.2022.09.003 |
0.485 |
|
| 2022 |
Tegally H, San JE, Cotten M, Moir M, Tegomoh B, Mboowa G, Martin DP, Baxter C, Lambisia AW, Diallo A, Amoako DG, Diagne MM, Sisay A, Zekri AN, Gueye AS, ... ... Sabeti PC, et al. The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. Science (New York, N.Y.). eabq5358. PMID 36108049 DOI: 10.1126/science.abq5358 |
0.3 |
|
| 2022 |
Obermeyer F, Jankowiak M, Barkas N, Schaffner SF, Pyle JD, Yurkovetskiy L, Bosso M, Park DJ, Babadi M, MacInnis BL, Luban J, Sabeti PC, Lemieux JE. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science (New York, N.Y.). abm1208. PMID 35608456 DOI: 10.1126/science.abm1208 |
0.494 |
|
| 2022 |
Earnest R, Uddin R, Matluk N, Renzette N, Turbett SE, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, ... ... Sabeti PC, et al. Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA. Cell Reports. Medicine. 3: 100583. PMID 35480627 DOI: 10.1016/j.xcrm.2022.100583 |
0.491 |
|
| 2022 |
Obermeyer F, Jankowiak M, Barkas N, Schaffner SF, Pyle JD, Yurkovetskiy L, Bosso M, Park DJ, Babadi M, MacInnis BL, Luban J, Sabeti PC, Lemieux JE. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Medrxiv : the Preprint Server For Health Sciences. PMID 35194619 DOI: 10.1101/2021.09.07.21263228 |
0.497 |
|
| 2022 |
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, ... ... Sabeti PC, et al. Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. Nature Medicine. PMID 35130561 DOI: 10.1038/s41591-022-01734-1 |
0.529 |
|
| 2021 |
Siddle KJ, Krasilnikova LA, Moreno GK, Schaffner SF, Vostok J, Fitzgerald NA, Lemieux JE, Barkas N, Loreth C, Specht I, Tomkins-Tinch CH, Paull JS, Schaeffer B, Taylor BP, Loftness B, ... ... Sabeti PC, et al. Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak. Cell. PMID 35051367 DOI: 10.1016/j.cell.2021.12.027 |
0.489 |
|
| 2021 |
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, ... ... Sabeti PC, et al. Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows. Nature Microbiology. PMID 34907347 DOI: 10.1038/s41564-021-01019-2 |
0.534 |
|
| 2021 |
Siddle KJ, Krasilnikova LA, Moreno GK, Schaffner SF, Vostok J, Fitzgerald NA, Lemieux JE, Barkas N, Loreth C, Specht I, Tomkins-Tinch CH, Silbert J, Schaeffer B, Taylor BP, Loftness B, ... ... Sabeti PC, et al. Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts. Medrxiv : the Preprint Server For Health Sciences. PMID 34704102 DOI: 10.1101/2021.10.20.21265137 |
0.524 |
|
| 2021 |
Normandin E, Holroyd KB, Collens SI, Shaw BM, Siddle KJ, Adams G, Rudy M, Solomon IH, Anahtar MN, Lemieux JE, Trombetta BA, Kivisakk P, Arnold SE, Rapalino O, Piantadosi AL, ... ... Sabeti PC, et al. Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients. Journal of the Neurological Sciences. 430: 120023. PMID 34678659 DOI: 10.1016/j.jns.2021.120023 |
0.753 |
|
| 2021 |
Earnest R, Uddin R, Matluk N, Renzette N, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, Vogels CBF, ... ... Sabeti PC, et al. Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA. Medrxiv : the Preprint Server For Health Sciences. PMID 34642698 DOI: 10.1101/2021.10.06.21264641 |
0.5 |
|
| 2021 |
Piantadosi A, Mukerji SS, Ye S, Leone MJ, Freimark LM, Park D, Adams G, Lemieux J, Kanjilal S, Solomon IH, Ahmed AA, Goldstein R, Ganesh V, Ostrem B, Cummins KC, ... ... Sabeti P, et al. Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis. Mbio. 12: e0114321. PMID 34465023 DOI: 10.1128/mBio.01143-21 |
0.537 |
|
| 2021 |
Botti-Lodovico Y, Nair P, Nosamiefan D, Stremlau M, Schaffner S, Agignoae SV, Aiyepada JO, Ajogbasile FV, Akpede GO, Alhasan F, Andersen KG, Asogun DA, Ayodeji OO, Badiane AS, Barnes K, ... ... Sabeti PC, et al. The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response. Viruses. 13. PMID 34452470 DOI: 10.3390/v13081605 |
0.536 |
|
| 2021 |
Gaye A, Ndiaye T, Sy M, Deme AB, Thiaw AB, Sene A, Ndiaye C, Diedhiou Y, Mbaye AM, Ndiaye I, Tomkins-Tinch C, Gomis JF, Badiane AS, MacInnis B, Park DJ, ... ... Sabeti PC, et al. Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018. Scientific Reports. 11: 10321. PMID 33990632 DOI: 10.1038/s41598-021-89070-1 |
0.587 |
|
| 2021 |
Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juárez YH, ... ... Sabeti PC, et al. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. PMID 33915569 DOI: 10.1038/s41586-021-03570-8 |
0.766 |
|
| 2021 |
Tomkins-Tinch CH, Daly JS, Gladden-Young A, Theodoropoulos NM, Madaio MP, Yu N, Vanguri VK, Siddle KJ, Adams G, Krasilnikova LA, Movahedi B, Bozorgzadeh A, Simin K, Lemieux JE, Luban J, ... ... Sabeti PC, et al. SARS-CoV-2 Reinfection in a Liver Transplant Recipient. Annals of Internal Medicine. PMID 33872044 DOI: 10.7326/L21-0108 |
0.383 |
|
| 2021 |
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw B, Pearlman L, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, ... ... Sabeti PC, et al. DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing. Biorxiv : the Preprint Server For Biology. PMID 33758855 DOI: 10.1101/2021.03.16.435654 |
0.531 |
|
| 2021 |
Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe A, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juárez YH, ... ... Sabeti PC, et al. A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 33655247 DOI: 10.1101/2021.02.25.430130 |
0.774 |
|
| 2020 |
Lemieux JE, Siddle KJ, Shaw BM, Loreth C, Schaffner SF, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, DeRuff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, ... ... Sabeti PC, et al. Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events. Science (New York, N.Y.). PMID 33303686 DOI: 10.1126/science.abe3261 |
0.773 |
|
| 2020 |
Normandin E, Solomon IH, Zamirpour S, Lemieux J, Freije CA, Mukerji SS, Tomkins-Tinch C, Park D, Sabeti PC, Piantadosi A. Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis. Open Forum Infectious Diseases. 7: ofaa392. PMID 33094116 DOI: 10.1093/Ofid/Ofaa392 |
0.555 |
|
| 2020 |
Lemieux J, Siddle KJ, Shaw BM, Loreth C, Schaffner S, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, Deruff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, ... ... Sabeti P, et al. Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events. Medrxiv : the Preprint Server For Health Sciences. PMID 32869040 DOI: 10.1101/2020.08.23.20178236 |
0.773 |
|
| 2020 |
Barnes KG, Lachenauer AE, Nitido A, Siddiqui S, Gross R, Beitzel B, Siddle KJ, Freije CA, Dighero-Kemp B, Mehta SB, Carter A, Uwanibe J, Ajogbasile F, Olumade T, Odia I, ... ... Sabeti PC, et al. Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time. Nature Communications. 11: 4131. PMID 32807807 DOI: 10.1038/S41467-020-17994-9 |
0.509 |
|
| 2020 |
Klitting R, Mehta SB, Oguzie JU, Oluniyi PE, Pauthner MG, Siddle KJ, Andersen KG, Happi CT, Sabeti PC. Lassa Virus Genetics. Current Topics in Microbiology and Immunology. PMID 32418034 DOI: 10.1007/82_2020_212 |
0.307 |
|
| 2020 |
Kinsella CM, Paras ML, Smole S, Mehta S, Ganesh V, Chen LH, McQuillen DP, Shah R, Chan J, Osborne M, Hennigan S, Halpern-Smith F, Brown CM, Sabeti P, Piantadosi A. Jamestown Canyon virus in Massachusetts: Clinical case series and vector screening. Emerging Microbes & Infections. 1-27. PMID 32302268 DOI: 10.1080/22221751.2020.1756697 |
0.425 |
|
| 2020 |
Wohl S, Metsky HC, Schaffner SF, Piantadosi A, Burns M, Lewnard JA, Chak B, Krasilnikova LA, Siddle KJ, Matranga CB, Bankamp B, Hennigan S, Sabina B, Byrne EH, McNall RJ, ... ... Sabeti PC, et al. Combining genomics and epidemiology to track mumps virus transmission in the United States. Plos Biology. 18: e3000611. PMID 32045407 DOI: 10.1371/Journal.Pbio.3000611 |
0.562 |
|
| 2019 |
Ye SH, Siddle KJ, Park DJ, Sabeti PC. Benchmarking Metagenomics Tools for Taxonomic Classification. Cell. 178: 779-794. PMID 31398336 DOI: 10.1016/J.Cell.2019.07.010 |
0.46 |
|
| 2019 |
Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, ... ... Sabeti PC, et al. Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. Nature Biotechnology. 37: 160-168. PMID 30718881 DOI: 10.1038/S41587-018-0006-X |
0.546 |
|
| 2018 |
Bankole BE, Kayode AT, Nosamiefan IO, Eromon P, Baniecki ML, Daniels RF, Hamilton EJ, Durfee K, MacInnis B, Okafor H, Sowunmi A, Volkman SK, Sabeti P, Wirth D, Happi CT, et al. Characterization of Plasmodium falciparum structure in Nigeria with malaria SNPs barcode. Malaria Journal. 17: 472. PMID 30558627 DOI: 10.1186/S12936-018-2623-8 |
0.33 |
|
| 2018 |
Piantadosi A, Freije CA, Gosmann C, Ye S, Park D, Schaffner SF, Tully DC, Allen TM, Dong KL, Sabeti PC, Kwon DS. Metagenomic sequencing of HIV-1 in the blood and female genital tract reveals little quasispecies diversity during acute infection. Journal of Virology. PMID 30381486 DOI: 10.1128/Jvi.00804-18 |
0.466 |
|
| 2018 |
Siddle KJ, Eromon P, Barnes KG, Mehta S, Oguzie JU, Odia I, Schaffner SF, Winnicki SM, Shah RR, Qu J, Wohl S, Brehio P, Iruolagbe C, Aiyepada J, Uyigue E, ... ... Sabeti PC, et al. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. The New England Journal of Medicine. PMID 30332564 DOI: 10.1056/Nejmoa1804498 |
0.577 |
|
| 2018 |
Choi K, Ryu H, Siddle KJ, Piantadosi A, Freimark L, Park DJ, Sabeti P, Han J. Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood. Analytical Chemistry. PMID 29536737 DOI: 10.1021/Acs.Analchem.7B05200 |
0.569 |
|
| 2018 |
Piantadosi A, Mukerji S, Ye S, Lemieux J, Friemark L, Park D, Adams G, Leone M, Goldberg M, Cho T, Rosenberg E, Sabeti P. A53 Systematic application of metagenomics NGS to identify and sequence viral pathogens in infections of the central nervous system Virus Evolution. 4. DOI: 10.1093/Ve/Vey010.052 |
0.544 |
|
| 2018 |
Piantadosi A, Mukerji S, Ye S, Leone M, Freimark L, Lemieux J, Solomon I, Ahmed A, Kanjilal S, Goldstein R, Ganesh V, Ostrem B, Thon J, Kinsella C, Adams G, ... ... Sabeti P, et al. 868. Prospective Pathogen Detection in Patients With Central Nervous System Inflammation Using Metagenomic Sequencing Open Forum Infectious Diseases. 5: S23-S23. DOI: 10.1093/Ofid/Ofy209.053 |
0.311 |
|
| 2017 |
Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, ... ... Sabeti PC, et al. Zika virus evolution and spread in the Americas. Nature. PMID 28538734 DOI: 10.1038/Nature22402 |
0.588 |
|
| 2017 |
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, ... ... Sabeti PC, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. PMID 28538723 DOI: 10.1038/Nature22400 |
0.57 |
|
| 2017 |
Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, ... ... Sabeti PC, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040 |
0.544 |
|
| 2017 |
Akhuemokhan O, Ehiemua J, Adomeh D, Odia I, Olomu S, Becker-Ziaja B, Happi C, Asogun D, Okogbenin S, Okokhere P, Dawodu O, Sabeti P, Gunther S, Akpede G. G311 Lassa fever and convulsions associated with fever: A case-control study Archives of Disease in Childhood. 102. DOI: 10.1136/Archdischild-2017-313087.304 |
0.339 |
|
| 2016 |
Wohl S, Schaffner SF, Sabeti PC. Genomic Analysis of Viral Outbreaks. Annual Review of Virology. PMID 27501264 DOI: 10.1146/annurev-virology-110615-035747 |
0.318 |
|
| 2016 |
Wu S, Tan J, Yang Y, Peng Q, Zhang M, Li J, Lu D, Liu Y, Lou H, Feng Q, Lu Y, Guan Y, Zhang Z, Jiao Y, Sabeti P, et al. Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations. Human Genetics. PMID 27487801 DOI: 10.1007/S00439-016-1718-Y |
0.346 |
|
| 2016 |
Matranga CB, Gladden-Young A, Qu J, Winnicki S, Nosamiefan D, Levin JZ, Sabeti PC. Unbiased Deep Sequencing of RNA Viruses from Clinical Samples. Journal of Visualized Experiments : Jove. PMID 27403729 DOI: 10.3791/54117 |
0.32 |
|
| 2016 |
Goba A, Khan SH, Fonnie M, Fullah M, Moigboi A, Kovoma A, Sinnah V, Yoko N, Rogers H, Safai S, Momoh M, Koroma V, Kamara FK, Konowu E, Yillah M, ... ... Sabeti PC, et al. An Outbreak of Ebola Virus Disease in the Lassa Fever Zone. The Journal of Infectious Diseases. PMID 27402779 DOI: 10.1093/Infdis/Jiw239 |
0.497 |
|
| 2016 |
Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, ... ... Sabeti PC, et al. Ebola Virus Epidemiology and Evolution in Nigeria. The Journal of Infectious Diseases. PMID 27377746 DOI: 10.1093/Infdis/Jiw190 |
0.569 |
|
| 2016 |
Cnops L, van Griensven J, Honko AN, Bausch DG, Sprecher A, Hill CE, Colebunders R, Johnson JC, Griffiths A, Palacios GF, Kraft CS, Kobinger G, Hewlett A, Norwood DA, Sabeti P, et al. Essentials of filoviral load quantification. The Lancet. Infectious Diseases. PMID 27296694 DOI: 10.1016/S1473-3099(16)30063-9 |
0.346 |
|
| 2015 |
Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, ... ... Sabeti PC, et al. Evolution and Spread of Ebola Virus in Liberia, 2014-2015. Cell Host & Microbe. 18: 659-669. PMID 26651942 DOI: 10.1016/J.Chom.2015.11.008 |
0.564 |
|
| 2015 |
Andersen KG, Shapiro BJ, Matranga CB, Sealfon R, Lin AE, Moses LM, Folarin OA, Goba A, Odia I, Ehiane PE, Momoh M, England EM, Winnicki S, Branco LM, Gire SK, ... ... Sabeti PC, et al. Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus. Cell. 162: 738-50. PMID 26276630 DOI: 10.1016/J.Cell.2015.07.020 |
0.313 |
|
| 2015 |
Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, et al. Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic. Nature. 524: 102-4. PMID 26106863 DOI: 10.1038/Nature14612 |
0.339 |
|
| 2015 |
Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B. ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. F1000research. 4: 12. PMID 26097686 DOI: 10.1371/Journal.Pcbi.1004087 |
0.31 |
|
| 2015 |
Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, ... ... Sabeti PC, et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. Cell. 161: 1516-26. PMID 26091036 DOI: 10.1016/J.Cell.2015.06.007 |
0.576 |
|
| 2015 |
Kugelman JR, Wiley MR, Mate S, Ladner JT, Beitzel B, Fakoli L, Taweh F, Prieto K, Diclaro JW, Minogue T, Schoepp RJ, Schaecher KE, Pettitt J, Bateman S, Fair J, ... ... Sabeti PC, et al. Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia. Emerging Infectious Diseases. 21: 1135-43. PMID 26079255 DOI: 10.3201/Eid2107.150522 |
0.544 |
|
| 2015 |
Broadbent KM, Broadbent JC, Ribacke U, Wirth D, Rinn JL, Sabeti PC. Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. Bmc Genomics. 16: 454. PMID 26070627 DOI: 10.1186/S12864-015-1603-4 |
0.761 |
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| 2015 |
Baniecki ML, Faust AL, Schaffner SF, Park DJ, Galinsky K, Daniels RF, Hamilton E, Ferreira MU, Karunaweera ND, Serre D, Zimmerman PA, Sá JM, Wellems TE, Musset L, Legrand E, ... ... Sabeti PC, et al. Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections. Plos Neglected Tropical Diseases. 9: e0003539. PMID 25781890 DOI: 10.1371/Journal.Pntd.0003539 |
0.529 |
|
| 2015 |
Stremlau MH, Andersen KG, Folarin OA, Grove JN, Odia I, Ehiane PE, Omoniwa O, Omoregie O, Jiang PP, Yozwiak NL, Matranga CB, Yang X, Gire SK, Winnicki S, Tariyal R, ... ... Sabeti PC, et al. Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa. Plos Neglected Tropical Diseases. 9: e0003631. PMID 25781465 DOI: 10.1371/journal.pntd.0003631 |
0.311 |
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| 2015 |
Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B. Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinformatics (Oxford, England). 31: 616-7. PMID 25644272 DOI: 10.1093/Bioinformatics/Btv019 |
0.311 |
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| 2015 |
Kugelman JR, Sanchez-Lockhart M, Andersen KG, Gire S, Park DJ, Sealfon R, Lin AE, Wohl S, Sabeti PC, Kuhn JH, Palacios GF. Evaluation of the potential impact of Ebola virus genomic drift on the efficacy of sequence-based candidate therapeutics. Mbio. 6. PMID 25604787 DOI: 10.1128/Mbio.02227-14 |
0.557 |
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| 2015 |
Lemieux J, Tran A, Freimark L, Goethert H, Bazner S, McGrath G, Rosenberg E, Telford S, Bailey J, Sabeti P. Whole-Genome Sequencing of Babesia microti From Patients Reveals Recent Origin, Extensive Population Structure, and Recent Expansion of Zoonotic Strains Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.34 |
0.344 |
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| 2014 |
Kuhn JH, Andersen KG, Baize S, Bào Y, Bavari S, Berthet N, Blinkova O, Brister JR, Clawson AN, Fair J, Gabriel M, Garry RF, Gire SK, Goba A, Gonzalez JP, ... ... Sabeti PC, et al. Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses. 6: 4760-99. PMID 25421896 DOI: 10.3390/V6114760 |
0.561 |
|
| 2014 |
Matranga CB, Andersen KG, Winnicki S, Busby M, Gladden AD, Tewhey R, Stremlau M, Berlin A, Gire SK, England E, Moses LM, Mikkelsen TS, Odia I, Ehiane PE, Folarin O, ... ... Sabeti PC, et al. Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. Genome Biology. 15: 519. PMID 25403361 DOI: 10.1186/PREACCEPT-1698056557139770 |
0.319 |
|
| 2014 |
Schieffelin JS, Shaffer JG, Goba A, Gbakie M, Gire SK, Colubri A, Sealfon RS, Kanneh L, Moigboi A, Momoh M, Fullah M, Moses LM, Brown BL, Andersen KG, Winnicki S, ... ... Sabeti PC, et al. Clinical illness and outcomes in patients with Ebola in Sierra Leone. The New England Journal of Medicine. 371: 2092-100. PMID 25353969 DOI: 10.1056/NEJMoa1411680 |
0.474 |
|
| 2014 |
Kuhn JH, Andersen KG, Bào Y, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, ... ... Sabeti PC, et al. Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses. 6: 3663-82. PMID 25256396 DOI: 10.3390/V6093663 |
0.535 |
|
| 2014 |
Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, ... ... Sabeti PC, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science (New York, N.Y.). 345: 1369-72. PMID 25214632 DOI: 10.1126/Science.1259657 |
0.572 |
|
| 2014 |
Olalde I, Allentoft ME, Sánchez-Quinto F, Santpere G, Chiang CW, DeGiorgio M, Prado-Martinez J, RodrÃguez JA, Rasmussen S, Quilez J, RamÃrez O, Marigorta UM, Fernández-Callejo M, Prada ME, Encinas JM, ... ... Sabeti P, et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature. 507: 225-8. PMID 24463515 DOI: 10.1038/Nature12960 |
0.393 |
|
| 2014 |
Matranga CB, Andersen KG, Winnicki S, Busby M, Gladden AD, Tewhey R, Stremlau M, Berlin A, Gire SK, England E, Moses LM, Mikkelsen TS, Odia I, Ehiane PE, Folarin O, ... ... Sabeti PC, et al. Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. Genome Biology. 15: 519-519. DOI: 10.1186/S13059-014-0519-7 |
0.319 |
|
| 2013 |
Chang HH, Moss EL, Park DJ, Ndiaye D, Mboup S, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. Malaria life cycle intensifies both natural selection and random genetic drift. Proceedings of the National Academy of Sciences of the United States of America. 110: 20129-34. PMID 24259712 DOI: 10.1073/Pnas.1319857110 |
0.482 |
|
| 2013 |
Grossman SR, Andersen KG, Shlyakhter I, Tabrizi S, Winnicki S, Yen A, Park DJ, Griesemer D, Karlsson EK, Wong SH, Cabili M, Adegbola RA, Bamezai RN, Hill AV, Vannberg FO, ... ... Sabeti PC, et al. Identifying recent adaptations in large-scale genomic data. Cell. 152: 703-13. PMID 23415221 DOI: 10.1016/J.Cell.2013.01.035 |
0.534 |
|
| 2013 |
Kamberov YG, Wang S, Tan J, Gerbault P, Wark A, Tan L, Yang Y, Li S, Tang K, Chen H, Powell A, Itan Y, Fuller D, Lohmueller J, Mao J, ... ... Sabeti PC, et al. Modeling recent human evolution in mice by expression of a selected EDAR variant. Cell. 152: 691-702. PMID 23415220 DOI: 10.1016/J.Cell.2013.01.016 |
0.717 |
|
| 2012 |
Park DJ, Lukens AK, Neafsey DE, Schaffner SF, Chang HH, Valim C, Ribacke U, Van Tyne D, Galinsky K, Galligan M, Becker JS, Ndiaye D, Mboup S, Wiegand RC, Hartl DL, ... Sabeti PC, et al. Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. 109: 13052-7. PMID 22826220 DOI: 10.1073/Pnas.1210585109 |
0.526 |
|
| 2012 |
Chang HH, Park DJ, Galinsky KJ, Schaffner SF, Ndiaye D, Ndir O, Mboup S, Wiegand RC, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population. Molecular Biology and Evolution. 29: 3427-39. PMID 22734050 DOI: 10.1093/Molbev/Mss161 |
0.526 |
|
| 2012 |
Milner DA, Vareta J, Valim C, Montgomery J, Daniels RF, Volkman SK, Neafsey DE, Park DJ, Schaffner SF, Mahesh NC, Barnes KG, Rosen DM, Lukens AK, Van Tyne D, Wiegand RC, ... Sabeti PC, et al. Human cerebral malaria and Plasmodium falciparum genotypes in Malawi. Malaria Journal. 11: 35. PMID 22314206 DOI: 10.1186/1475-2875-11-35 |
0.492 |
|
| 2012 |
Volkman SK, Ndiaye D, Diakite M, Koita OA, Nwakanma D, Daniels RF, Park DJ, Neafsey DE, Muskavitch MA, Krogstad DJ, Sabeti PC, Hartl DL, Wirth DF. Application of genomics to field investigations of malaria by the international centers of excellence for malaria research. Acta Tropica. 121: 324-32. PMID 22182668 DOI: 10.1016/J.Actatropica.2011.12.002 |
0.52 |
|
| 2012 |
Cabili M, Lander E, Sabeti P, Regev A, Rinn JL, Rinn JL, Rinn JL, Trapnell C, Trapnell C, Goff L, Goff L, Broadbent K, Broadbent K, Guttman M. Abstract IA4: Linking RNA to human health and disease Cancer Research. 72: IA4-IA4. DOI: 10.1158/1538-7445.Nonrna12-Ia4 |
0.754 |
|
| 2011 |
Bhatia G, Patterson N, Pasaniuc B, Zaitlen N, Genovese G, Pollack S, Mallick S, Myers S, Tandon A, Spencer C, Palmer CD, Adeyemo AA, Akylbekova EL, Cupples LA, Divers J, ... ... Sabeti P, et al. Genome-wide comparison of African-ancestry populations from CARe and other cohorts reveals signals of natural selection. American Journal of Human Genetics. 89: 368-81. PMID 21907010 DOI: 10.1016/J.Ajhg.2011.07.025 |
0.352 |
|
| 2011 |
Broadbent KM, Park D, Wolf AR, Van Tyne D, Sims JS, Ribacke U, Volkman S, Duraisingh M, Wirth D, Sabeti PC, Rinn JL. A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biology. 12: R56. PMID 21689454 DOI: 10.1186/Gb-2011-12-6-R56 |
0.739 |
|
| 2011 |
Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, ... ... Sabeti PC, et al. Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. Plos Genetics. 7: e1001383. PMID 21533027 DOI: 10.1371/Journal.Pgen.1001383 |
0.524 |
|
| 2008 |
Neafsey DE, Schaffner SF, Volkman SK, Park D, Montgomery P, Milner DA, Lukens A, Rosen D, Daniels R, Houde N, Cortese JF, Tyndall E, Gates C, Stange-Thomann N, Sarr O, ... ... Sabeti PC, et al. Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence. Genome Biology. 9: R171. PMID 19077304 DOI: 10.1186/Gb-2008-9-12-R171 |
0.523 |
|
| 2008 |
Daniels R, Volkman SK, Milner DA, Mahesh N, Neafsey DE, Park DJ, Rosen D, Angelino E, Sabeti PC, Wirth DF, Wiegand RC. A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking. Malaria Journal. 7: 223. PMID 18959790 DOI: 10.1186/1475-2875-7-223 |
0.474 |
|
| 2007 |
Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, ... ... Sabeti P, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 449: 851-61. PMID 17943122 DOI: 10.1038/Nature06258 |
0.311 |
|
| 2007 |
Butty V, Roy M, Sabeti P, Besse W, Benoist C, Mathis D. Signatures of strong population differentiation shape extended haplotypes across the human CD28, CTLA4, and ICOS costimulatory genes. Proceedings of the National Academy of Sciences of the United States of America. 104: 570-5. PMID 17197413 DOI: 10.1073/Pnas.0610124104 |
0.324 |
|
| 2006 |
Walsh EC, Sabeti P, Hutcheson HB, Fry B, Schaffner SF, de Bakker PI, Varilly P, Palma AA, Roy J, Cooper R, Winkler C, Zeng Y, de The G, Lander ES, O'Brien S, et al. Searching for signals of evolutionary selection in 168 genes related to immune function. Human Genetics. 119: 92-102. PMID 16362345 DOI: 10.1007/S00439-005-0090-0 |
0.335 |
|
| 2003 |
Campbell SJ, Sabeti P, Fielding K, Sillah J, Bah B, Gustafson P, Manneh K, Lisse I, Sirugo G, Bellamy R, Bennett S, Aaby P, McAdam KP, Bah-Sow O, Lienhardt C, et al. Variants of the CD40 ligand gene are not associated with increased susceptibility to tuberculosis in West Africa. Immunogenetics. 55: 502-7. PMID 12955358 DOI: 10.1007/S00251-003-0602-9 |
0.302 |
|
| 2002 |
Sabeti P, Usen S, Farhadian S, Jallow M, Doherty T, Newport M, Pinder M, Ward R, Kwiatkowski D. CD40L association with protection from severe malaria Genes and Immunity. 3: 286-291. DOI: 10.1038/Sj.Gene.6363877 |
0.353 |
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