Sriram Kosuri - Publications

Chemistry University of California, Los Angeles, Los Angeles, CA 
Biochemistry, Systems Biology and Biological Regulation, Synthetic Biology, Molecular Biology, Genomic

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yu TC, Liu WL, Brinck MS, Davis JE, Shek J, Bower G, Einav T, Insigne KD, Phillips R, Kosuri S, Urtecho G. Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems. Nature Communications. 12: 325. PMID 33436562 DOI: 10.1038/s41467-020-20094-3  0.56
2021 Yu TC, Liu WL, Brinck MS, Davis JE, Shek J, Bower G, Einav T, Insigne KD, Phillips R, Kosuri S, Urtecho G. Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems. Nature Communications. 12: 325. PMID 33436562 DOI: 10.1038/s41467-020-20094-3  0.56
2020 Renganaath K, Cheung R, Day L, Kosuri S, Kruglyak L, Albert FW. Systematic identification of -regulatory variants that cause gene expression differences in a yeast cross. Elife. 9. PMID 33179598 DOI: 10.7554/eLife.62669  0.32
2020 Jones EM, Lubock NB, Venkatakrishnan AJ, Wang J, Tseng AM, Paggi JM, Latorraca NR, Cancilla D, Satyadi M, Davis JE, Babu MM, Dror RO, Kosuri S. Structural and functional characterization of G protein-coupled receptors with deep mutational scanning. Elife. 9. PMID 33084570 DOI: 10.7554/eLife.54895  0.6
2020 Bloom JS, Jones EM, Gasperini M, Lubock NB, Sathe L, Munugala C, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, ... ... Kosuri S, et al. Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. Medrxiv : the Preprint Server For Health Sciences. PMID 32909008 DOI: 10.1101/2020.08.04.20167874  0.6
2020 Sidore AM, Plesa C, Samson JA, Lubock NB, Kosuri S. DropSynth 2.0: high-fidelity multiplexed gene synthesis in emulsions. Nucleic Acids Research. PMID 32692349 DOI: 10.1093/Nar/Gkaa600  0.6
2020 Davis JE, Insigne KD, Jones EM, Hastings QA, Boldridge WC, Kosuri S. Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays. Cell Systems. PMID 32603702 DOI: 10.1016/J.Cels.2020.05.011  0.32
2019 Jones EM, Jajoo R, Cancilla D, Lubock NB, Wang J, Satyadi M, Cheung R, de March C, Bloom JS, Matsunami H, Kosuri S. A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing. Cell Systems. PMID 30904378 DOI: 10.1016/J.Cels.2019.02.009  0.6
2018 Cheung R, Insigne KD, Yao D, Burghard CP, Wang J, Hsiao YE, Jones EM, Goodman DB, Xiao X, Kosuri S. A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions. Molecular Cell. PMID 30503770 DOI: 10.1016/J.Molcel.2018.10.037  0.92
2018 Johns NI, Gomes ALC, Yim SS, Yang A, Blazejewski T, Smillie CS, Smith MB, Alm EJ, Kosuri S, Wang HH. Metagenomic mining of regulatory elements enables programmable species-selective gene expression. Nature Methods. 15: 323-329. PMID 30052624 DOI: 10.1038/Nmeth.4633  0.68
2018 Urtecho G, Tripp AD, Insigne K, Kim H, Kosuri S. Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli. Biochemistry. PMID 29388765 DOI: 10.1021/Acs.Biochem.7B01069  0.56
2018 Plesa C, Sidore AM, Lubock NB, Zhang D, Kosuri S. Multiplexed gene synthesis in emulsions for exploring protein functional landscapes. Science (New York, N.Y.). PMID 29301959 DOI: 10.1126/Science.Aao5167  0.76
2017 Lubock NB, Zhang D, Sidore AM, Church GM, Kosuri S. A systematic comparison of error correction enzymes by next-generation sequencing. Nucleic Acids Research. 45: 9206-9217. PMID 28911123 DOI: 10.1093/Nar/Gkx691  0.92
2016 Taylor ND, Garruss AS, Moretti R, Chan S, Arbing MA, Cascio D, Rogers JK, Isaacs FJ, Kosuri S, Baker D, Fields S, Church GM, Raman S. Engineering an allosteric transcription factor to respond to new ligands. Nature Methods. 13: 177-83. PMID 26689263 DOI: 10.1038/Nmeth.3696  0.92
2015 Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH. Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. Acs Synthetic Biology. 4: 17-22. PMID 24856730 DOI: 10.1021/Sb5001565  0.92
2014 Kosuri S, Church GM. Large-scale de novo DNA synthesis: technologies and applications. Nature Methods. 11: 499-507. PMID 24781323 DOI: 10.1038/Nmeth.2918  0.92
2013 Lajoie MJ, Kosuri S, Mosberg JA, Gregg CJ, Zhang D, Church GM. Probing the limits of genetic recoding in essential genes. Science (New York, N.Y.). 342: 361-3. PMID 24136967 DOI: 10.1126/Science.1241460  0.76
2013 Goodman DB, Church GM, Kosuri S. Causes and effects of N-terminal codon bias in bacterial genes. Science (New York, N.Y.). 342: 475-9. PMID 24072823 DOI: 10.1126/Science.1241934  0.92
2013 Kosuri S, Goodman DB, Cambray G, Mutalik VK, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 110: 14024-9. PMID 23924614 DOI: 10.1073/Pnas.1301301110  0.92
2013 Mali P, Aach J, Stranges PB, Esvelt KM, Moosburner M, Kosuri S, Yang L, Church GM. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nature Biotechnology. 31: 833-8. PMID 23907171 DOI: 10.1038/Nbt.2675  0.92
2012 Eroshenko N, Kosuri S, Marblestone AH, Conway N, Church GM. Gene Assembly from Chip-Synthesized Oligonucleotides. Current Protocols in Chemical Biology. 2012. PMID 25077042 DOI: 10.1002/9780470559277.Ch110190  0.92
2012 Church GM, Gao Y, Kosuri S. Next-generation digital information storage in DNA. Science (New York, N.Y.). 337: 1628. PMID 22903519 DOI: 10.1126/Science.1226355  0.92
2011 Zhang F, Cong L, Lodato S, Kosuri S, Church GM, Arlotta P. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nature Biotechnology. 29: 149-53. PMID 21248753 DOI: 10.1038/Nbt.1775  0.92
2010 Kosuri S, Eroshenko N, Leproust EM, Super M, Way J, Li JB, Church GM. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nature Biotechnology. 28: 1295-9. PMID 21113165 DOI: 10.1038/Nbt.1716  0.92
2007 Kosuri S, Kelly JR, Endy D. TABASCO: A single molecule, base-pair resolved gene expression simulator. Bmc Bioinformatics. 8: 480. PMID 18093293 DOI: 10.1186/1471-2105-8-480  0.36
2005 Chan LY, Kosuri S, Endy D. Refactoring bacteriophage T7. Molecular Systems Biology. 1: 2005.0018. PMID 16729053 DOI: 10.1038/Msb4100025  0.36
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