Philip N. Borer - Publications

Affiliations: 
1975-1984 Chemistry University of California, Irvine, Irvine, CA 
 1984- Chemistry Syracuse University, Syracuse, NY, United States 
Area:
Biochemistry; nucleic acid structure and interaction, biosensors, nuclear magnetic resonance
Website:
http://asfaculty.syr.edu/pages/chem/Borer-Philip.html

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Ouyang W, Okaine S, McPike MP, Lin Y, Borer PN. Probing the RNA binding surface of the HIV-1 nucleocapsid protein by site-directed mutagenesis. Biochemistry. 52: 3358-68. PMID 23594178 DOI: 10.1021/Bi400125Z  0.633
2013 Niedzwiecki DJ, Iyer R, Borer PN, Movileanu L. Correction to Sampling a Biomarker of the Human Immunodeficiency Virus across a Synthetic Nanopore. Acs Nano. 7: 3731. PMID 23541219 DOI: 10.1021/Nn401345W  0.729
2013 Niedzwiecki DJ, Iyer R, Borer PN, Movileanu L. Sampling a biomarker of the human immunodeficiency virus across a synthetic nanopore. Acs Nano. 7: 3341-50. PMID 23445080 DOI: 10.1021/Nn400125C  0.783
2013 Mohammad MM, Iyer R, Howard KR, McPike MP, Borer PN, Movileanu L. Biomolecular Detection with Engineered Robust Nanopores Biophysical Journal. 104: 527a-528a. DOI: 10.1016/J.Bpj.2012.11.2920  0.349
2012 Mohammad MM, Iyer R, Howard KR, McPike MP, Borer PN, Movileanu L. Engineering a rigid protein tunnel for biomolecular detection. Journal of the American Chemical Society. 134: 9521-31. PMID 22577864 DOI: 10.1021/Ja3043646  0.761
2011 Kupakuwana GV, Crill JE, McPike MP, Borer PN. Acyclic identification of aptamers for human alpha-thrombin using over-represented libraries and deep sequencing. Plos One. 6: e19395. PMID 21625587 DOI: 10.1371/Journal.Pone.0019395  0.753
2010 Athavale SS, Ouyang W, McPike MP, Hudson BS, Borer PN. Effects of the nature and concentration of salt on the interaction of the HIV-1 nucleocapsid protein with SL3 RNA. Biochemistry. 49: 3525-33. PMID 20359247 DOI: 10.1021/Bi901279E  0.787
2010 Kupakuwana GV, Chen L, Crill JE, McPike MP, Borer PN. High Throughput Screening of Aptamers For Human Thrombin and Factor IXa Biophysical Journal. 98: 74a. DOI: 10.1016/J.Bpj.2009.12.421  0.766
2007 DeCiantis CL, Jensen DK, Hudson BS, Borer PN. A nucleic acid switch triggered by the HIV-1 nucleocapsid protein. Biochemistry. 46: 9164-73. PMID 17658889 DOI: 10.1021/Bi700031J  0.734
2004 Boudreau EA, Pelczer I, Borer PN, Heffron GJ, LaPlante SR. Changes in drug 13C NMR chemical shifts as a tool for monitoring interactions with DNA. Biophysical Chemistry. 109: 333-44. PMID 15110931 DOI: 10.1016/J.Bpc.2003.12.005  0.341
2004 Cavaluzzi MJ, Borer PN. Revised UV extinction coefficients for nucleoside-5'-monophosphates and unpaired DNA and RNA. Nucleic Acids Research. 32: e13. PMID 14722228 DOI: 10.1093/Nar/Gnh015  0.761
2003 Yuan Y, Kerwood DJ, Paoletti AC, Shubsda MF, Borer PN. Stem of SL1 RNA in HIV-1: structure and nucleocapsid protein binding for a 1 x 3 internal loop. Biochemistry. 42: 5259-69. PMID 12731867 DOI: 10.1021/Bi034084A  0.785
2002 Paoletti AC, Shubsda MF, Hudson BS, Borer PN. Affinities of the nucleocapsid protein for variants of SL3 RNA in HIV-1. Biochemistry. 41: 15423-8. PMID 12484783 DOI: 10.1021/Bi026307N  0.794
2002 Cavaluzzi MJ, Kerwood DJ, Borer PN. Accurate nucleic acid concentrations by nuclear magnetic resonance. Analytical Biochemistry. 308: 373-80. PMID 12419352 DOI: 10.1016/S0003-2697(02)00262-2  0.748
2002 Shubsda MF, Paoletti AC, Hudson BS, Borer PN. Affinities of packaging domain loops in HIV-1 RNA for the nucleocapsid protein. Biochemistry. 41: 5276-82. PMID 11955077 DOI: 10.1021/Bi016045+  0.786
2001 Hatala PJ, Kallmerten J, Borer PN. Regioselective synthesis of 1,3,5-13C3 and 2,4-13C2-labeled 2-deoxyribonolactones. Nucleosides, Nucleotides & Nucleic Acids. 20: 1961-73. PMID 11794801 DOI: 10.1081/Ncn-100108326  0.752
2001 Kerwood DJ, Cavaluzzi MJ, Borer PN. Structure of SL4 RNA from the HIV-1 packaging signal. Biochemistry. 40: 14518-29. PMID 11724565 DOI: 10.1021/Bi0111909  0.759
2001 Laplante SR, Borer PN. Changes in 13C NMR chemical shifts of DNA as a tool for monitoring drug interactions Biophysical Chemistry. 90: 219-232. PMID 11407640 DOI: 10.1016/S0301-4622(01)00143-0  0.338
2001 Hayes MP, Hatala PJ, Sherer BA, Tong X, Zanatta N, Borer PN, Kallmerten J. Regioselective synthesis of 13C1-labeled 2-deoxyribonolactones Tetrahedron. 57: 1515-1524. DOI: 10.1016/S0040-4020(00)01148-0  0.743
1998 Pappalardo L, Kerwood DJ, Pelczer I, Borer PN. Three-dimensional folding of an RNA hairpin required for packaging HIV-1 Journal of Molecular Biology. 282: 801-818. PMID 9743628 DOI: 10.1006/Jmbi.1998.2046  0.405
1998 Nooren IMA, Wang KY, Borer PN, Pelczer I. Full 1H NMR assignment of a 24-nucleotide RNA hairpin: Application of the 1H 3D-NOE/2QC experiment Journal of Biomolecular Nmr. 11: 319-328. PMID 9691279 DOI: 10.1023/A:1008252510576  0.402
1998 De Guzman RN, Wu ZR, Stalling CC, Pappalardo L, Borer PN, Summers MF. Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science (New York, N.Y.). 279: 384-8. PMID 9430589 DOI: 10.1126/Science.279.5349.384  0.457
1996 Bishop KD, Borer PN, Pelczer I. Improved proton assignment for DNA by application of aliasing and dispersive-absorptive phasing to two-quantum COSY spectra. Journal of Magnetic Resonance. Series B. 110: 9-15. PMID 8556239 DOI: 10.1006/Jmrb.1996.0002  0.3
1996 Kerwood DJ, Borer PN. Structure refinement for a 24-nucleotide RNA hairpin Magnetic Resonance in Chemistry. 34: S136-S146. DOI: 10.1002/(Sici)1097-458X(199612)34:133.0.Co;2-B  0.424
1995 Borer PN, Lin Y, Wang S, Roggenbuck MW, Gott JM, Uhlenbeck OC, Pelczer I. Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry. 34: 6488-503. PMID 7756280 DOI: 10.1021/Bi00019A030  0.679
1994 Borer PN, LaPlante SR, Kumar A, Zanatta N, Martin A, Hakkinen A, Levy GC. 13C-NMR relaxation in three DNA oligonucleotide duplexes: model-free analysis of internal and overall motion. Biochemistry. 33: 2441-50. PMID 8117704 DOI: 10.1021/Bi00175A012  0.337
1994 LaPlante SR, Zanatta N, Hakkinen A, Wang AH, Borer PN. 13C-NMR of the deoxyribose sugars in four DNA oligonucleotide duplexes: assignment and structural features. Biochemistry. 33: 2430-40. PMID 8117703 DOI: 10.1021/Bi00175A011  0.347
1992 Wang KY, Heffron GJ, Bishop KD, Levy GC, Garbesi AM, Tondelli L, Medley JH, Borer PN. Improved strategy for sequence-specific13C NMR assignments in [d(CGTACGTACG)]2 Magnetic Resonance in Chemistry. 30: 377-380. DOI: 10.1002/Mrc.1260300504  0.302
1991 Bishop KD, Borer PN, Huang YQ, Lane MJ. Actinomycin D induced DNase I hypersensitivity and asymmetric structure transmission in a DNA hexadecamer Nucleic Acids Research. 19: 871-875. PMID 2017369 DOI: 10.1093/Nar/19.4.871  0.339
1990 Wang YY, Lyttle MH, Borer PN. Enzymatic and NMR analysis of oligoribonucleotides synthesized with 2'-tert-butyldimethylsilyl protected cyanoethylphosphoramidite monomers Nucleic Acids Research. 18: 3347-3352. PMID 2356125 DOI: 10.1093/Nar/18.11.3347  0.338
1989 Grahn H, Edlund U, van den Hoogen YT, Altona C, Delaglio F, Roggenbuck MW, Borer PN. Toward a computer assisted analysis of NOESY spectra: a multivariate data analysis of an RNA NOESY spectrum. Journal of Biomolecular Structure & Dynamics. 6: 1135-50. PMID 2479394 DOI: 10.1080/07391102.1989.10506541  0.352
1988 Borer PN, LaPlante SR, Zanatta N, Levy GC. Hydrogen-bonding effects and 13C-NMR of the DNA double helix. Nucleic Acids Research. 16: 2323-32. PMID 3357779 DOI: 10.1093/Nar/16.5.2323  0.318
1988 LaPlante SR, Ashcroft J, Cowburn D, Levy GC, Borer PN. 13C NMR assignments of the protonated carbons of [d(TAGCGCTA)]2 by two-dimensional proton-detected heteronuclear correlation. Journal of Biomolecular Structure & Dynamics. 5: 1089-99. PMID 3271498 DOI: 10.1080/07391102.1988.10506450  0.315
1988 Hyman TJ, Boudreau EA, Martin GG, Jucker BM, Borer PN, Levy GC. 13C NMR assignments of the bases in oligodeoxynucleotides: an automated procedure using Bayesian statistics. Journal of Chemical Information and Computer Sciences. 28: 226-30. PMID 3235474 DOI: 10.1021/Ci00060A009  0.312
1988 LaPlante SR, Boudreau EA, Zanatta N, Levy GC, Borer PN, Ashcroft J, Cowburn D. 13C NMR of the bases of three DNA oligonucleotide duplexes: assignment methods and structural features. Biochemistry. 27: 7902-9. PMID 3207718 DOI: 10.1021/Bi00420A048  0.36
1988 Huang YQ, Rehfuss RP, Laplante SR, Boudreau E, Borer PN, Lane MJ. Actinomycin D induced DNAse I cleavage enhancement caused by sequence specific propagation of an altered DNA structure Nucleic Acids Research. 16: 11125-11139. PMID 3205740 DOI: 10.1093/Nar/16.23.11125  0.337
1987 Lane MJ, Laplante S, Rehfuss RP, Borer PN, Cantor CR. Actinomycin D facilitates transition of AT domains in molecules of sequence (AT)nAGCT(AT)n to a DNAse I detectable alternating structure Nucleic Acids Research. 15: 839-852. PMID 3822817 DOI: 10.1093/Nar/15.2.839  0.539
1986 Glasel JA, Borer PN. NMR studies of flexible opiate conformations at monoclonal antibody binding sites I. transferred nuclear overhauser effects show bound conformations Biochemical and Biophysical Research Communications. 141: 1267-1273. PMID 3814123 DOI: 10.1016/S0006-291X(86)80182-6  0.3
1986 Stone MP, Winkleb SA, Borer PN. 13C-NMR of ribosyl ApApA, ApApG and ApUpG Journal of Biomolecular Structure and Dynamics. 3: 767-781. PMID 3271048 DOI: 10.1080/07391102.1986.10508460  0.348
1985 Stone MP, Winkle SA, McFarland GD, Yoo MC, Borer PN. 13C-NMR of ribosyl A-A-A, A-A-G, AND A-U-G Synthesis and Assignment Biophysical Chemistry. 23: 129-138. PMID 4092078 DOI: 10.1016/0301-4622(85)80071-5  0.397
1984 Borer PN, Zanatta N, Holak TA, Levy GC, van Boom JH, Wang AH. Conformation and dynamics of short DNA duplexes: (dC-dG)3 and (dC-dG)4. Journal of Biomolecular Structure & Dynamics. 1: 1373-86. PMID 6400826 DOI: 10.1080/07391102.1984.10507526  0.304
1983 Bubienko E, Cruz P, Thomason JF, Borer PN. Nearest-neighbor effects in the structure and function of nucleic acids Progress in Nucleic Acid Research and Molecular Biology. 30: 41-90. PMID 6198694 DOI: 10.1016/S0079-6603(08)60683-2  0.337
1982 Gross DS, Simpkins H, Bubienko E, Borer PN. Proton magnetic resonance analysis of terbium ion-nucleic acid complexes: Further evidence for two-site binding to polynucleotides Archives of Biochemistry and Biophysics. 219: 401-410. PMID 7165310 DOI: 10.1016/0003-9861(82)90172-2  0.316
1982 Cruz P, Bubienko E, Borer PN. A model for base overlap in RNA Nature. 298: 198-200. PMID 6178038 DOI: 10.1038/298198A0  0.412
1981 Bubienko E, Uniack MA, Borer PN. Sequence and structure in double-stranded ribonucleic acid: (A-G-C-U)2 and (A-C-G-U)2 Biochemistry. 20: 6987-6994. PMID 7317364 DOI: 10.1021/Bi00527A032  0.397
1981 Stone MP, Borer PN. 1H-NMR of G-U-C and G-U-C-C in D2O:. Assignment of nonexchangeable protons and analysis of solution conformation Biophysical Chemistry. 14: 369-374. PMID 6279200 DOI: 10.1016/0301-4622(81)85040-5  0.379
1981 Stone MP, Borer PN. 1H-NMR Of U-G-A and U-G-A-A in D2O:. Assignment of nonexchangeable protons and analysis of solution conformation Biophysical Chemistry. 14: 363-368. PMID 6279199 DOI: 10.1016/0301-4622(81)85039-9  0.366
1981 Stone MP, Johnson DL, Borer PN. Unusual structures in single-stranded ribonucleic acid: Proton nuclear magnetic resonance of AUCCA in deuterium oxide Biochemistry. 20: 3604-3610. PMID 6167285 DOI: 10.1021/Bi00515A046  0.358
1980 Kan LS, Borer PN, Cheng DM, Ts'o PO. 1H- and 13C-NMR studies on caffeine and its interaction with nucleic acids Biopolymers - Peptide Science Section. 19: 1641-1654. PMID 7426681 DOI: 10.1002/Bip.1980.360190908  0.621
1976 Giessner-Prettre C, Pullman B, Borer PN, Kan LS, Ts'o PO. Ring-current effects in the Nmr of nucleic acids: a graphical approach. Biopolymers. 15: 2277-86. PMID 990409 DOI: 10.1002/Bip.1976.360151114  0.611
1975 Kan LS, Borer PN, Ts'o POP. Conformation and interaction of short nucleic acid double-stranded helices. II. Proton magnetic resonance studies on the hydrogen-bonded NH-N protons of ribosyl ApApGpCpUpU helix Biochemistry. 14: 4864-4869. PMID 1182125 DOI: 10.1021/Bi00693A013  0.355
1975 Borer PN, Kan LS, Ts'o POP. Conformation and interaction of short nucleic acid double-stranded helices. I. Proton magnetic resonance studies on the nonexchangeable protons of ribosyl ApApGpCpUpU Biochemistry. 14: 4847-4863. PMID 1182124 DOI: 10.1021/Bi00693A012  0.365
1974 Borer PN, Dengler B, Tinoco I, Uhlenbeck OC. Stability of ribonucleic acid double-stranded helices. Journal of Molecular Biology. 86: 843-53. PMID 4427357 DOI: 10.1016/0022-2836(74)90357-X  0.696
1973 Borer PN, Uhlenbeck OC, Dengler B, Tinoco I. Circular dichroism of double-helical oligoribonucleotides. Journal of Molecular Biology. 80: 759-71. PMID 4773028 DOI: 10.1016/0022-2836(73)90208-8  0.682
1973 Uhlenbeck OC, Borer PN, Dengler B, Tinoco I. Stability of RNA hairpin loops: A 6 -C m -U 6 . Journal of Molecular Biology. 73: 483-96. PMID 4715013 DOI: 10.1016/0022-2836(73)90095-8  0.677
1973 Tinoco I, Borer PN, Dengler B, Levin MD, Uhlenbeck OC, Crothers DM, Bralla J. Improved estimation of secondary structure in ribonucleic acids. Nature: New Biology. 246: 40-1. PMID 4519026  0.572
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