Dana M. Freund - Related publications

University of Minnesota, Twin Cities, Minneapolis, MN 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Jin X, Zhu L, Tao C, Xie Q, Xu X, Chang L, Tan Y, Ding G, Li H, Wang X. An improved protein extraction method applied to cotton leaves is compatible with 2-DE and LC-MS. Bmc Genomics. 20: 285. PMID 30975097 DOI: 10.1186/s12864-019-5658-5   
2019 Coelho Graça D, Hartmer R, Jabs W, Scherl A, Clerici L, Samii K, Tsybin YO, Hochstrasser D, Lescuyer P. Detection of Proteoforms Using Top-Down Mass Spectrometry and Diagnostic Ions. Methods in Molecular Biology (Clifton, N.J.). 1959: 173-183. PMID 30852823 DOI: 10.1007/978-1-4939-9164-8_12   
2019 Krieger JR, Wybenga-Groot LE, Tong J, Bache N, Tsao MS, Moran MF. Evosep One enables robust deep proteome coverage using tandem mass tags while significantly reducing instrument time. Journal of Proteome Research. PMID 30938160 DOI: 10.1021/acs.jproteome.9b00082   
2019 Kim H, Ji YS, Rehman SU, Choi MS, Gye MC, Yoo HH. Pharmacokinetics and Metabolism of Acetyl Triethyl Citrate, a Water-Soluble Plasticizer for Pharmaceutical Polymers in Rats. Pharmaceutics. 11. PMID 30987254 DOI: 10.3390/pharmaceutics11040162   
2019 Hughes CS, Sorensen PH, Morin GB. A Standardized and Reproducible Proteomics Protocol for Bottom-Up Quantitative Analysis of Protein Samples Using SP3 and Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1959: 65-87. PMID 30852816 DOI: 10.1007/978-1-4939-9164-8_5   
2019 Bruderer R, Muntel J, Müller S, Bernhardt OM, Gandhi T, Cominetti O, Macron C, Carayol J, Rinner O, Astrup A, Saris WHM, Hager J, Valsesia A, Dayon L, Reiter L. Analysis of 1508 plasma samples by capillary flow data-independent acquisition profiles proteomics of weight loss and maintenance. Molecular & Cellular Proteomics : McP. PMID 30948622 DOI: 10.1074/mcp.RA118.001288   
2019 Emmott E, Jovanovic M, Slavov N. Approaches for Studying Ribosome Specialization. Trends in Biochemical Sciences. PMID 30792028 DOI: 10.1016/j.tibs.2019.01.008   
2019 Wieczorek S, Combes F, Borges H, Burger T. Protein-Level Statistical Analysis of Quantitative Label-Free Proteomics Data with ProStaR. Methods in Molecular Biology (Clifton, N.J.). 1959: 225-246. PMID 30852826 DOI: 10.1007/978-1-4939-9164-8_15   
2019 Harney DJ, Hutchison AT, Hatchwell L, Humphrey SJ, James DE, Hocking S, Heilbronn LK, Larance M. Proteomic Analysis Applied to Human Plasma During Intermittent Fasting. Journal of Proteome Research. PMID 30892045 DOI: 10.1021/acs.jproteome.9b00090   
2019 Ryu SY, Wendt GA. MetaMSD: meta analysis for mass spectrometry data. Peerj. 7: e6699. PMID 30993040 DOI: 10.7717/peerj.6699   
2019 Kocurek KI, May RC, Cooper HJ. Application of High-Field Asymmetric Waveform Ion Mobility Separation to LESA Mass Spectrometry of Bacteria. Analytical Chemistry. PMID 30835113 DOI: 10.1021/acs.analchem.9b00307   
2019 Pernemalm M, Sandberg A, Zhu Y, Boekel J, Tamburro D, Schwenk JM, Björk A, Wahren-Herlenius M, Åmark H, Östenson CG, Westgren M, Lehtiö J. In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta. Elife. 8. PMID 30958262 DOI: 10.7554/eLife.41608   
2019 Lund PJ, Kori Y, Zhao X, Sidoli S, Yuan ZF, Garcia BA. Isotopic Labeling and Quantitative Proteomics of Acetylation on Histones and Beyond. Methods in Molecular Biology (Clifton, N.J.). 1977: 43-70. PMID 30980322 DOI: 10.1007/978-1-4939-9232-4_5   
2019 Barry JA, Ait-Belkacem R, Hardesty WM, Benakli L, Andonian C, Licea-Perez H, Stauber J, Castellino S. Multicenter Validation Study of Quantitative Imaging Mass Spectrometry. Analytical Chemistry. PMID 30938516 DOI: 10.1021/acs.analchem.9b01016   
2019 Stopka SA, Samarah L, Shaw JB, Liyu AV, Veličković D, Agtuca BJ, Kukolj C, Koppenaal DW, Stacey G, Paša-Tolić L, Anderton CR, Vertes A. Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry. Analytical Chemistry. PMID 30821434 DOI: 10.1021/acs.analchem.8b05084   
2019 Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Goliusinski W, Masternak M, Nelson KE, Freire M, Yu Y. Self-assembled STrap for global proteomics and salivary biomarker discovery. Journal of Proteome Research. PMID 30848925 DOI: 10.1021/acs.jproteome.9b00037   
2019 Pfammatter S, Bonneil E, McManus FP, Thibault P. Accurate quantitative proteomic analyses using metabolic labeling and High Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS). Journal of Proteome Research. PMID 30919622 DOI: 10.1021/acs.jproteome.9b00021   
2019 Khare P, Marcotte A, Sheu R, Walsh AN, Ditto JC, Gentner DR. Advances in offline approaches for trace measurements of complex organic compound mixtures via soft ionization and high-resolution tandem mass spectrometry. Journal of Chromatography. A. PMID 30928166 DOI: 10.1016/j.chroma.2019.03.037   
2019 Marchetti L, Pellati F, Graziosi R, Brighenti V, Pinetti D, Bertelli D. Identification and determination of bioactive phenylpropanoid glycosides of Aloysia polystachya (Griseb. et Moldenke) by HPLC-MS. Journal of Pharmaceutical and Biomedical Analysis. 166: 364-370. PMID 30708235 DOI: 10.1016/j.jpba.2019.01.033   
2019 Park HG, Jang KS, Park HM, Song WS, Jeong YY, Ahn DH, Kim SM, Yang YH, Kim YG. MALDI-TOF MS-based total serum protein fingerprinting for liver cancer diagnosis. The Analyst. PMID 30849133 DOI: 10.1039/c8an02241k   
2019 Ji H, Xu Y, Lu H, Zhang Z. Deep MS/MS-Aided Structural-similarity Scoring for Unknown Metabolites Identification. Analytical Chemistry. PMID 30990670 DOI: 10.1021/acs.analchem.8b05405   
2019 Schachner LF, Ives AN, McGee JP, Melani RD, Kafader JO, Compton PD, Patrie SM, Kelleher NL. Standard Proteoforms and Their Complexes for Native Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 30963455 DOI: 10.1007/s13361-019-02191-w   
2019 Chiang CH, Lee HH, Chen BH, Lin YC, Chao YY, Huang YL. Using ambient mass spectrometry and LC-MS/MS for the rapid detection and identification of multiple illicit street drugs. Journal of Food and Drug Analysis. 27: 439-450. PMID 30987715 DOI: 10.1016/j.jfda.2018.11.003   
2019 Chen YT, Huang HC, Hsieh YJ, Fu SH, Li L, Chen CL, Chu LJ, Yu JS. Targeting amine- and phenol-containing metabolites in urine by dansylation isotope labeling and liquid chromatography mass spectrometry for evaluation of bladder cancer biomarkers. Journal of Food and Drug Analysis. 27: 460-474. PMID 30987717 DOI: 10.1016/j.jfda.2018.11.008   
2019 van der Veen A, van Faassen M, de Jong WHA, van Beek AP, Dijck-Brouwer DAJ, Kema IP. Development and validation of a LC-MS/MS method for the establishment of reference intervals and biological variation for five plasma steroid hormones. Clinical Biochemistry. PMID 30922617 DOI: 10.1016/j.clinbiochem.2019.03.013   
2019 Merkley ED, Wunschel DS, Wahl KL, Jarman KH. Applications and challenges of forensic proteomics. Forensic Science International. 297: 350-363. PMID 30929674 DOI: 10.1016/j.forsciint.2019.01.022   
2019 Xu J, Zhai Y, Feng L, Xie T, Yao W, Shan J, Zhang L. An optimized analytical method for cellular targeted quantification of primary metabolites in tricarboxylic acid cycle and glycolysis using gas chromatography-tandem mass spectrometry and its application in three kinds of hepatic cell lines. Journal of Pharmaceutical and Biomedical Analysis. 171: 171-179. PMID 31005043 DOI: 10.1016/j.jpba.2019.04.022   
2019 Korte AR, Morris N, Vertes A. High Throughput Complementary Analysis and Quantitation of Metabolites by MALDI- and Silicon Nanopost Array-Laser Desorption Ionization Mass Spectrometry. Analytical Chemistry. PMID 30786207 DOI: 10.1021/acs.analchem.8b05074   
2019 Liu Y, Wang X, Chen Z, Liang DH, Sun K, Huang S, Zhu J, Shi X, Zeng J, Wang Q, Zhang B. Towards a high peak capacity of 130 using nanoflow hydrophilic interaction liquid chromatography. Analytica Chimica Acta. 1062: 147-155. PMID 30947991 DOI: 10.1016/j.aca.2019.01.060   
2019 Rostkowski P, Haglund P, Aalizadeh R, Alygizakis N, Thomaidis N, Arandes JB, Nizzetto PB, Booij P, Budzinski H, Brunswick P, Covaci A, Gallampois C, Grosse S, Hindle R, Ipolyi I, et al. The strength in numbers: comprehensive characterization of house dust using complementary mass spectrometric techniques. Analytical and Bioanalytical Chemistry. PMID 30830245 DOI: 10.1007/s00216-019-01615-6   
2019 Nielson CM, Jacobs JM, Orwoll ES. Proteomic studies of bone and skeletal health outcomes. Bone. PMID 30954730 DOI: 10.1016/j.bone.2019.03.032   
2019 Skjaervø Ø, Trimpin S, Halvorsen TG. Matrix assisted ionization mass spectrometry in targeted protein analysis - an initial evaluation. Rapid Communications in Mass Spectrometry : Rcm. PMID 30883961 DOI: 10.1002/rcm.8437   
2019 Ohtani Y, Aburaya S, Minakuchi H, Miura N, Aoki W, Ueda M. Evaluation of meter-long monolithic columns for selected reaction monitoring mass spectrometry. Journal of Bioscience and Bioengineering. PMID 30956101 DOI: 10.1016/j.jbiosc.2019.03.001   
2019 Ranganathan N, Li C, Suder T, Karanji AK, Li X, He Z, Valentine SJ, Li P. Capillary Vibrating Sharp-Edge Spray Ionization (cVSSI) for Voltage-Free Liquid Chromatography-Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 30793264 DOI: 10.1007/s13361-019-02147-0   
2019 Fu X, Deja S, Kucejova B, Duarte JAG, McDonald JG, Burgess SC. Targeted Determination of Tissue Energy Status by LC-MS/MS. Analytical Chemistry. PMID 30938977 DOI: 10.1021/acs.analchem.9b00217   
2019 Fei Q, Wang D, Jasbi P, Zhang P, Gowda GAN, Raftery D, Gu H. Combining NMR and MS with Chemical Derivatization for Absolute Quantification with Reduced Matrix Effects. Analytical Chemistry. PMID 30801179 DOI: 10.1021/acs.analchem.8b05611   
2019 Lv L, Liu Y, Li L, Qin FL, Li CJ, Zhou YQ, Zhou YN, Wang H, Jiao Y, Zhao L. Pharmacokinetics and tissue distribution of Ebracteolatain A, a potential anti-cancer compound, as determined by an optimized ultra-performance liquid chromatography tandem mass spectrometry method. Journal of Pharmaceutical and Biomedical Analysis. 169: 279-287. PMID 30884326 DOI: 10.1016/j.jpba.2019.03.015   
2019 Zeng J, Wang Z, Huang X, Eckstein SS, Lin X, Piao H, Weigert C, Yin P, Lehmannn R, Xu G. Comprehensive Profiling by Non-targeted Stable Isotope Tracing Capillary Electrophoresis-Mass Spectrometry - A Novel Tool Complementing Metabolomics Analyses of Polar Metabolites. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 30810245 DOI: 10.1002/chem.201900539   
2019 Zhang Y, Zhao W, Wang D, Zhang H, Chai G, Zhang Q, Lu B, Sun S, Zhang J. Direct Analysis of Carbonyl Compounds by Mass Spectrometry with Double Region Atmospheric Pressure Chemical Ionization. Analytical Chemistry. PMID 30951291 DOI: 10.1021/acs.analchem.8b05834   
2019 Kraut A, Louwagie M, Bruley C, Masselon C, Couté Y, Brun V, Hesse AM. Protein Biomarker Discovery in Non-depleted Serum by Spectral Library-Based Data-Independent Acquisition Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1959: 129-150. PMID 30852820 DOI: 10.1007/978-1-4939-9164-8_9   
2019 Li GS, Ma Y, Geng T, Gao X, Huang WZ, Cao L, Xiao W, Wang ZZ. [Rapid identification of chemical components in compound Nanxing acesodyne plaster by UPLC-Q-TOF-MS/MS]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 44: 298-307. PMID 30989949 DOI: 10.19540/j.cnki.cjcmm.20181107.004   
2019 Burriss KH, Mosley AL. Methods review: Mass spectrometry analysis of RNAPII complexes. Methods (San Diego, Calif.). PMID 30902665 DOI: 10.1016/j.ymeth.2019.03.013   
2019 Reeve MA, Pollard KM. Discrimination between regional biotypes of using a simple MALDI-TOF MS-based method for use with seeds. Plant Methods. 15: 25. PMID 30911324 DOI: 10.1186/s13007-019-0412-1   
2019 Solakyildirim K. Recent advances in glycosaminoglycan analysis by various mass spectrometry techniques. Analytical and Bioanalytical Chemistry. PMID 30911798 DOI: 10.1007/s00216-019-01722-4   
2019 Ma WT, Liu ZY, Chen XZ, Lin ZL, Zheng ZB, Miao WG, Xie SQ. A protein identification algorithm for tandem mass spectrometry by incorporating the abundance of mRNA into a binomial probability scoring model. Journal of Proteomics. PMID 30790687 DOI: 10.1016/j.jprot.2019.02.010   
2019 Chen X, Rao J, Zheng Z, Yu Y, Lou S, Liu L, He Q, Wu L, Sun X. Integrated tear proteome and metabolome reveal panels of inflammatory-related molecules via key regulatory pathways in dry eye syndrome. Journal of Proteome Research. PMID 30966751 DOI: 10.1021/acs.jproteome.9b00149   
2019 Guyader ME, Warren LD, Green E, Butt C, Ivosev G, Kiesling RL, Schoenfuss HL, Higgins CP. Prioritizing potential endocrine active high resolution mass spectrometry (HRMS) features in Minnesota lakewater. The Science of the Total Environment. 670: 814-825. PMID 30921715 DOI: 10.1016/j.scitotenv.2019.02.448   
2019 Huang Y, Jiao Y, Gao Y, Zhang P, Huang W, Liu Y, Huang Y, Tian Y, Wan JB, Zhang Z, Hao K, Xu F. An extendable all-in-one injection twin derivatization LC-MS/MS strategy for the absolute quantification of multiple chemical-group-based submetabolomes. Analytica Chimica Acta. 1063: 99-109. PMID 30967192 DOI: 10.1016/j.aca.2019.02.001   
2019 Peffers MJ, Smagul A, Anderson JR. Proteomic analysis of synovial fluid: current and potential uses to improve clinical outcomes. Expert Review of Proteomics. 1-16. PMID 30793992 DOI: 10.1080/14789450.2019.1578214   
2019 Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM. Challenges in Identifying the Dark Molecules of Life. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 30883183 DOI: 10.1146/annurev-anchem-061318-114959