☰

Nils W. Homer, Ph.D. - Publications

Affiliations: 
2010 University of California, Los Angeles, Los Angeles, CA 
Area:
bioinformatics; computational biology; machine learning
Tree Info Similar researchers PubMed Report error

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Snedecor J, Fennell T, Stadick S, Homer N, Antunes J, Stephens K, Holt C. Fast and accurate kinship estimation using sparse SNPs in relatively large database searches. Forensic Science International. Genetics. 61: 102769. PMID 36087514 DOI: 10.1016/j.fsigen.2022.102769  0.449
2018 Clark MJ, Homer N, O'Connor BD, Chen Z, Eskin A, Lee H, Merriman B, Nelson SF. Correction: U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line. Plos Genetics. 14: e1007392. PMID 29768410 DOI: 10.1371/Journal.Pgen.1007392  0.432
2014 Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology. 15: R53. PMID 24667040 DOI: 10.1186/Gb-2014-15-3-R53  0.524
2011 Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, ... ... Homer N, et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature. 475: 348-52. PMID 21776081 DOI: 10.1038/Nature10242  0.489
2010 Homer N, Nelson SF. Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA. Genome Biology. 11: R99. PMID 20932289 DOI: 10.1186/Gb-2010-11-10-R99  0.577
2010 Homer N, Nelson SF, Merriman B. Local alignment of generalized k-base encoded DNA sequence. Bmc Bioinformatics. 11: 347. PMID 20576157 DOI: 10.1186/1471-2105-11-347  0.471
2010 Li H, Homer N. A survey of sequence alignment algorithms for next-generation sequencing. Briefings in Bioinformatics. 11: 473-483. PMID 20460430 DOI: 10.1093/Bib/Bbq015  0.452
2010 Clark MJ, Homer N, O'Connor BD, Chen Z, Eskin A, Lee H, Merriman B, Nelson SF. U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line. Plos Genetics. 6: e1000832. PMID 20126413 DOI: 10.1371/Journal.Pgen.1000832  0.553
2009 Lee H, O'Connor BD, Merriman B, Funari VA, Homer N, Chen Z, Cohn DH, Nelson SF. Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing. Bmc Genomics. 10: 646. PMID 20043857 DOI: 10.1186/1471-2164-10-646  0.575
2009 Homer N, Merriman B, Nelson SF. BFAST: an alignment tool for large scale genome resequencing. Plos One. 4. PMID 19907642 DOI: 10.1371/Journal.Pone.0007767  0.555
2009 Homer N, Merriman B, Nelson SF. Local alignment of two-base encoded DNA sequence Bmc Bioinformatics. 10: 175-175. PMID 19508732 DOI: 10.1186/1471-2105-10-175  0.494
2009 Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics (Oxford, England). 25: 2078-9. PMID 19505943 DOI: 10.1093/Bioinformatics/Btp352  0.482
2009 Tembe WD, Pearson JV, Homer N, Lowey J, Suh E, Craig DW. Statistical comparison framework and visualization scheme for ranking-based algorithms in high-throughput genome-wide studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 565-77. PMID 19361328 DOI: 10.1089/Cmb.2008.0151  0.499
2009 Schrauwen I, Ealy M, Huentelman MJ, Thys M, Homer N, Vanderstraeten K, Fransen E, Corneveaux JJ, Craig DW, Claustres M, Cremers CW, Dhooge I, Van de Heyning P, Vincent R, Offeciers E, et al. A genome-wide analysis identifies genetic variants in the RELN gene associated with otosclerosis. American Journal of Human Genetics. 84: 328-38. PMID 19230858 DOI: 10.1016/J.Ajhg.2009.01.023  0.46
2008 Craig DW, Pearson JV, Szelinger S, Sekar A, Redman M, Corneveaux JJ, Pawlowski TL, Laub T, Nunn G, Stephan DA, Homer N, Huentelman MJ. Identification of genetic variants using bar-coded multiplexed sequencing. Nature Methods. 5: 887-93. PMID 18794863 DOI: 10.1038/Nmeth.1251  0.564
2008 Homer N, Szelinger S, Redman M, Duggan D, Tembe W, Muehling J, Pearson JV, Stephan DA, Nelson SF, Craig DW. Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. Plos Genetics. 4: e1000167. PMID 18769715 DOI: 10.1371/Journal.Pgen.1000167  0.492
2008 Homer N, Tembe WD, Szelinger S, Redman M, Stephan DA, Pearson JV, Nelson SF, Craig D. Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies. Bioinformatics (Oxford, England). 24: 1896-902. PMID 18617537 DOI: 10.1093/Bioinformatics/Btn333  0.468
2008 Brown KM, Macgregor S, Montgomery GW, Craig DW, Zhao ZZ, Iyadurai K, Henders AK, Homer N, Campbell MJ, Stark M, Thomas S, Schmid H, Holland EA, Gillanders EM, Duffy DL, et al. Common sequence variants on 20q11.22 confer melanoma susceptibility. Nature Genetics. 40: 838-40. PMID 18488026 DOI: 10.1038/Ng.163  0.403
2007 Pearson JV, Huentelman MJ, Halperin RF, Tembe WD, Melquist S, Homer N, Brun M, Szelinger S, Coon KD, Zismann VL, Webster JA, Beach T, Sando SB, Aasly JO, Heun R, et al. Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies. American Journal of Human Genetics. 80: 126-39. PMID 17160900 DOI: 10.1086/510686  0.411
Show low-probability matches.