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Yaniv Erlich - Publications

Affiliations: 
Computer Science Columbia University, New York, NY 
Area:
Computational Genomics, Bioinformatics, Biomedical Privacy
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yogev O, Weissbrod O, Battistoni G, Bressan D, Naamati A, Falciatori I, Berkyurek AC, Rasnic R, Izuagbe R, Hosmillo M, Ilan S, Grossman I, McCormick L, Honeycutt CC, Johnston T, ... ... Erlich Y, et al. From a genome-wide screen of RNAi molecules against SARS-CoV-2 to a validated broad-spectrum and potent prophylaxis. Communications Biology. 6: 277. PMID 36928598 DOI: 10.1038/s42003-023-04589-5  0.475
2022 Heller B, Erlich Y, Kariv D, Maaravi Y. On the Opportunities and Risks of Examining the Genetics of Entrepreneurship. Genes. 13. PMID 36553475 DOI: 10.3390/genes13122208  0.357
2022 Yogev O, Weissbrod O, Battistoni G, Bressan D, Naamti A, Falciatori I, Berkyurek AC, Rasnic R, Hosmillo M, Ilan S, Grossman I, McCormick L, Honeycutt CC, Johnston T, Gagne M, ... ... Erlich Y, et al. Genome wide screen of RNAi molecules against SARS-CoV-2 creates a broadly potent prophylaxis. Biorxiv : the Preprint Server For Biology. PMID 35441162 DOI: 10.1101/2022.04.12.488010  0.476
2021 Jones KM, Cook-Deegan R, Rotimi CN, Callier SL, Bentley AR, Stevens H, Phillips KA, Jansen JP, Weyant CF, Roberts DE, Zielinski D, Erlich Y, Garrison NA, Carroll SR, Ossorio PN, et al. Complicated legacies: The human genome at 20. Science (New York, N.Y.). 371: 564-569. PMID 33542123 DOI: 10.1126/science.abg5266  0.786
2019 Shor T, Kalka I, Geiger D, Erlich Y, Weissbrod O. Estimating variance components in population scale family trees. Plos Genetics. 15: e1008124. PMID 31071088 DOI: 10.1371/Journal.Pgen.1008124  0.377
2018 Schweiger R, Erlich Y, Carmi S. FactorialHMM: Fast and exact inference in factorial hidden Markov models. Bioinformatics (Oxford, England). PMID 30445428 DOI: 10.1093/Bioinformatics/Bty944  0.405
2018 Erlich Y, Shor T, Pe'er I, Carmi S. Identity inference of genomic data using long-range familial searches. Science (New York, N.Y.). PMID 30309907 DOI: 10.1126/Science.Aau4832  0.471
2018 Kaplanis J, Gordon A, Shor T, Weissbrod O, Geiger D, Wahl M, Gershovits M, Markus B, Sheikh M, Gymrek M, Bhatia G, MacArthur DG, Price AL, Erlich Y. Quantitative analysis of population-scale family trees with millions of relatives. Science (New York, N.Y.). PMID 29496957 DOI: 10.1126/Science.Aam9309  0.675
2018 Yuan J, Gordon A, Speyer D, Aufrichtig R, Zielinski D, Pickrell J, Erlich Y. DNA.Land is a framework to collect genomes and phenomes in the era of abundant genetic information. Nature Genetics. PMID 29374253 DOI: 10.1038/S41588-017-0021-8  0.804
2017 Zaaijer S, Gordon A, Speyer D, Piccone R, Groen SC, Erlich Y. Rapid re-identification of human samples using portable DNA sequencing. Elife. 6. PMID 29182147 DOI: 10.7554/Elife.27798  0.377
2017 Gymrek M, Willems T, Reich D, Erlich Y. Interpreting short tandem repeat variations in humans using mutational constraint. Nature Genetics. 49: 1495-1501. PMID 28892063 DOI: 10.1038/Ng.3952  0.796
2017 Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y. Genome-wide profiling of heritable and de novo STR variations. Nature Methods. PMID 28436466 DOI: 10.1038/Nmeth.4267  0.787
2017 Curnin C, Gordon A, Erlich Y. DNA Compass: a secure, client-side site for navigating personal genetic information. Bioinformatics (Oxford, England). PMID 28334237 DOI: 10.1093/Bioinformatics/Btx135  0.489
2017 Erlich Y, Zielinski D. DNA Fountain enables a robust and efficient storage architecture. Science (New York, N.Y.). 355: 950-954. PMID 28254941 DOI: 10.1126/Science.Aaj2038  0.746
2017 Liu JZ, Erlich Y, Pickrell JK. Case-control association mapping by proxy using family history of disease. Nature Genetics. PMID 28092683 DOI: 10.1038/Ng.3766  0.389
2017 Zaaijer S, Gordon A, Speyer D, Piccone R, Groen SC, Erlich Y. Author response: Rapid re-identification of human samples using portable DNA sequencing Elife. DOI: 10.7554/Elife.27798.019  0.369
2016 Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, ... ... Erlich Y, et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. PMID 27654912 DOI: 10.1038/Nature18964  0.807
2016 Willems T, Gymrek M, Poznik GD, Tyler-Smith C, Erlich Y. Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates. American Journal of Human Genetics. 98: 919-933. PMID 27126583 DOI: 10.1016/J.Ajhg.2016.04.001  0.798
2016 Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, ... ... Erlich Y, et al. Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics. PMID 27111036 DOI: 10.1038/Ng.3559  0.804
2016 Quilez J, Guilmatre A, Garg P, Highnam G, Gymrek M, Erlich Y, Joshi RS, Mittelman D, Sharp AJ. Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans. Nucleic Acids Research. PMID 27060133 DOI: 10.1093/Nar/Gkw219  0.705
2016 Zaaijer S, Erlich Y. Using mobile sequencers in an academic classroom. Elife. 5. PMID 27054412 DOI: 10.7554/Elife.14258  0.408
2016 Nida H, Blum S, Zielinski D, Srivastava DA, Elbaum R, Xin Z, Erlich Y, Fridman E, Shental N. Highly efficient de novo mutant identification in a Sorghum bicolor TILLING population using the ComSeq approach. The Plant Journal : For Cell and Molecular Biology. PMID 26959378 DOI: 10.1111/Tpj.13161  0.783
2016 Willems T, Gymrek M, Poznik GD, Tyler-Smith C, Erlich Y. Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates American Journal of Human Genetics. DOI: 10.1016/j.ajhg.2016.04.001  0.735
2015 Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y. Abundant contribution of short tandem repeats to gene expression variation in humans. Nature Genetics. PMID 26642241 DOI: 10.1038/Ng.3461  0.803
2015 Erlich Y. A vision for ubiquitous sequencing. Genome Research. 25: 1411-6. PMID 26430149 DOI: 10.1101/Gr.191692.115  0.415
2014 Erlich Y, Williams JB, Glazer D, Yocum K, Farahany N, Olson M, Narayanan A, Stein LD, Witkowski JA, Kain RC. Redefining genomic privacy: trust and empowerment. Plos Biology. 12: e1001983. PMID 25369215 DOI: 10.1371/Journal.Pbio.1001983  0.419
2014 Willems T, Gymrek M, Highnam G, Mittelman D, Erlich Y. The landscape of human STR variation. Genome Research. 24: 1894-904. PMID 25135957 DOI: 10.1101/Gr.177774.114  0.816
2014 Zielinski D, Gordon A, Zaks BL, Erlich Y. iPipet: sample handling using a tablet. Nature Methods. 11: 784-5. PMID 25075904 DOI: 10.1038/Nmeth.3028  0.711
2014 Zielinski D, Markus B, Sheikh M, Gymrek M, Chu C, Zaks M, Srinivasan B, Hoffman JD, Aizenbud D, Erlich Y. OTX2 duplication is implicated in hemifacial microsomia. Plos One. 9: e96788. PMID 24816892 DOI: 10.1371/Journal.Pone.0096788  0.789
2014 Erlich Y, Narayanan A. Routes for breaching and protecting genetic privacy. Nature Reviews. Genetics. 15: 409-21. PMID 24805122 DOI: 10.1038/Nrg3723  0.343
2014 Erlich Y, Narayanan A. Erratum: Routes for breaching and protecting genetic privacy Nature Reviews Genetics. 15: 570-570. DOI: 10.1038/Nrg3777  0.349
2013 Gymrek M, Erlich Y. Profiling short tandem repeats from short reads. Methods in Molecular Biology (Clifton, N.J.). 1038: 113-35. PMID 23872972 DOI: 10.1007/978-1-62703-514-9_7  0.709
2013 Gymrek M, McGuire AL, Golan D, Halperin E, Erlich Y. Identifying personal genomes by surname inference. Science (New York, N.Y.). 339: 321-4. PMID 23329047 DOI: 10.1126/Science.1229566  0.744
2012 Zielinski D, Gymrek M, Erlich Y. Back to the family: a renewed approach to rare variant studies. Genome Medicine. 4: 97. PMID 23253160 DOI: 10.1186/Gm398  0.766
2012 Golan D, Erlich Y, Rosset S. Weighted pooling--practical and cost-effective techniques for pooled high-throughput sequencing. Bioinformatics (Oxford, England). 28: i197-206. PMID 22689761 DOI: 10.1093/Bioinformatics/Bts208  0.386
2012 Gymrek M, Golan D, Rosset S, Erlich Y. lobSTR: A short tandem repeat profiler for personal genomes. Genome Research. 22: 1154-62. PMID 22522390 DOI: 10.1101/Gr.135780.111  0.762
2012 Gymrek M, Golan D, Rosset S, Erlich Y. lobSTR: a novel pipeline for short tandem repeats profiling in personal genomes F1000research. 3. DOI: 10.7490/F1000Research.1090187.1  0.726
2011 Gymrek M, Erlich Y. Using DNA sequencers as stethoscopes. Genome Medicine. 3: 73. PMID 22103962 DOI: 10.1186/Gm289  0.716
2011 Erlich Y, Edvardson S, Hodges E, Zenvirt S, Thekkat P, Shaag A, Dor T, Hannon GJ, Elpeleg O. Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis. Genome Research. 21: 658-64. PMID 21487076 DOI: 10.1101/Gr.117143.110  0.672
2011 Erlich Y. Blood ties: chimerism can mask twin discordance in high-throughput sequencing. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 14: 137-43. PMID 21425895 DOI: 10.1375/Twin.14.2.137  0.487
2010 Erlich Y, Gordon A, Brand M, Hannon GJ, Mitra PP. Compressed Genotyping. Ieee Transactions On Information Theory / Professional Technical Group On Information Theory. 56: 706-723. PMID 21451737 DOI: 10.1109/Tit.2009.2037043  0.549
2010 Edvardson S, Shaag A, Zenvirt S, Erlich Y, Hannon GJ, Shanske AL, Gomori JM, Ekstein J, Elpeleg O. Joubert syndrome 2 (JBTS2) in Ashkenazi Jews is associated with a TMEM216 mutation. American Journal of Human Genetics. 86: 93-7. PMID 20036350 DOI: 10.1016/J.Ajhg.2009.12.007  0.531
2010 Edvardson S, Shaag A, Zenvirt S, Erlich Y, Hannon GJ, Shanske AL, Gomori JM, Ekstein J, Elpeleg O. Joubert Syndrome 2 (JBTS2) in Ashkenazi Jews Is Associated with a TMEM216 Mutation (DOI:10.1016/j.ajhg.2009.12.007) American Journal of Human Genetics. 86: 294. DOI: 10.1016/j.ajhg.2010.01.022  0.418
2009 Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ. Hierarchical rules for Argonaute loading in Drosophila. Molecular Cell. 36: 445-56. PMID 19917252 DOI: 10.1016/J.Molcel.2009.09.028  0.424
2009 Rechavi O, Erlich Y, Amram H, Flomenblit L, Karginov FV, Goldstein I, Hannon GJ, Kloog Y. Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs. Genes & Development. 23: 1971-9. PMID 19684116 DOI: 10.1101/Gad.1789609  0.419
2009 Erlich Y, Chang K, Gordon A, Ronen R, Navon O, Rooks M, Hannon GJ. DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis. Genome Research. 19: 1243-53. PMID 19447965 DOI: 10.1101/Gr.092957.109  0.596
2008 Erlich Y, Mitra PP, delaBastide M, McCombie WR, Hannon GJ. Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nature Methods. 5: 679-82. PMID 18604217 DOI: 10.1038/Nmeth.1230  0.552
2007 Ibarra I, Erlich Y, Muthuswamy SK, Sachidanandam R, Hannon GJ. A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells. Genes & Development. 21: 3238-43. PMID 18079172 DOI: 10.1101/Gad.1616307  0.433
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