Richard Dale Smith - Publications

Affiliations: 
Pacific Northwest National Laboratory, USA 

411 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Hollerbach AL, Conant CR, Nagy G, Monroe ME, Gupta K, Donor M, Giberson CM, Garimella SVB, Smith RD, Ibrahim YM. Dynamic Time-Warping Correction for Shifts in Ultrahigh Resolving Power Ion Mobility Spectrometry and Structures for Lossless Ion Manipulations. Journal of the American Society For Mass Spectrometry. PMID 33666432 DOI: 10.1021/jasms.1c00005  0.4
2020 Conant CR, Attah IK, Garimella SVB, Nagy G, Bilbao A, Smith RD, Ibrahim YM. Evaluation of Waveform Profiles for Traveling Wave Ion Mobility Separations in Structures for Lossless Ion Manipulations. Journal of the American Society For Mass Spectrometry. PMID 33126794 DOI: 10.1021/jasms.0c00282  0.4
2020 Li A, Nagy G, Conant CR, Norheim RV, Lee JY, Giberson C, Hollerbach AL, Prabhakaran V, Attah IK, Chouinard CD, Prabhakaran A, Smith RD, Ibrahim YM, Garimella SVB. Ion Mobility Spectrometry with High Ion Utilization Efficiency Using Traveling Wave-Based Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 33105077 DOI: 10.1021/acs.analchem.0c02100  0.4
2020 Nagy G, Attah IK, Conant CR, Liu W, Garimella SVB, Gunawardena H, Shaw JB, Smith RD, Ibrahim YM. Rapid and Simultaneous Characterization of Drug Conjugation in Heavy and Light Chains of a Monoclonal Antibody Revealed by High-Resolution Ion Mobility Separations in SLIM. Analytical Chemistry. PMID 32142606 DOI: 10.1021/Acs.Analchem.9B05209  0.4
2019 Garimella SVB, Nagy G, Ibrahim YM, Smith RD. Opening new paths for biological applications of ion mobility - mass spectrometry using Structures for Lossless Ion Manipulations. Trends in Analytical Chemistry : Trac. 116: 300-307. PMID 32831434 DOI: 10.1016/J.Trac.2019.04.021  0.4
2019 Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES. Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. Trends in Analytical Chemistry : Trac. 116: 292-299. PMID 31798197 DOI: 10.1016/J.Trac.2019.04.022  0.72
2019 Wojcik R, Nagy G, Attah IK, Webb I, Garimella SVB, Weitz KK, Hollerbach A, Monroe ME, Ligare MR, Nielson FF, Norheim RV, Renslow RS, Metz TO, Ibrahim YM, Smith RD. SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes. Analytical Chemistry. PMID 31450886 DOI: 10.1021/Acs.Analchem.9B02808  0.72
2019 Dickinson MS, Anderson LN, Webb-Robertson BM, Hansen JR, Smith RD, Wright AT, Hybiske K. Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites. Plos Pathogens. 15: e1007698. PMID 30943267 DOI: 10.1371/Journal.Ppat.1007698  0.36
2019 Attah IK, Garimella SVB, Webb IK, Nagy G, Norheim RV, Schimelfenig CE, Ibrahim YM, Smith RD. Dual Polarity Ion Confinement and Mobility Separations. Journal of the American Society For Mass Spectrometry. PMID 30834510 DOI: 10.1007/s13361-019-02138-1  0.4
2019 Nagy G, Kedia K, Attah IK, Garimella SVB, Ibrahim YM, Petyuk VA, Smith RD. Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized L-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 30816701 DOI: 10.1021/Acs.Analchem.8B04696  0.4
2019 Kyle JE, Burnum-Johnson KE, Wendler JP, Eisfeld AJ, Halfmann PJ, Watanabe T, Sahr F, Smith RD, Kawaoka Y, Waters KM, Metz TO. Plasma lipidome reveals critical illness and recovery from human Ebola virus disease. Proceedings of the National Academy of Sciences of the United States of America. 116: 3919-3928. PMID 30808769 DOI: 10.1073/Pnas.1815356116  0.72
2018 Hamid AM, Prabhakaran A, Garimella SVB, Ibrahim YM, Smith RD. Characterization of applied fields for ion mobility separations in traveling wave based structures for lossless ion manipulations (SLIM). International Journal of Mass Spectrometry. 430: 8-13. PMID 31467482 DOI: 10.1016/J.Ijms.2018.03.006  0.4
2018 Zhang P, Gaffrey MJ, Zhu Y, Chrisler WB, Fillmore TL, Yi L, Nicora CD, Zhang T, Wu H, Jacobs JM, Tang K, Kagan J, Srivastava S, Rodland KD, Qian WJ, ... Smith RD, et al. Carrier-assisted single-tube processing approach for targeted proteomics analysis of low numbers of mammalian cells. Analytical Chemistry. PMID 30557009 DOI: 10.1021/Acs.Analchem.8B04258  0.4
2018 Nagy G, Veličković D, Chu RK, Carrell AA, Weston DJ, Ibrahim YM, Anderton CR, Smith RD. Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations. Chemical Communications (Cambridge, England). PMID 30534702 DOI: 10.1039/C8Cc07482H  0.4
2018 Dou M, Chouinard CD, Zhu Y, Nagy G, Liyu AV, Ibrahim YM, Smith RD, Kelly RT. Nanowell-mediated multidimensional separations combining nanoLC with SLIM IM-MS for rapid, high-peak-capacity proteomic analyses. Analytical and Bioanalytical Chemistry. PMID 30397757 DOI: 10.1007/S00216-018-1452-5  0.4
2018 Shi T, Gaffrey MJ, Fillmore TL, Nicora CD, Yi L, Zhang P, Shukla AK, Wiley HS, Rodland KD, Liu T, Smith RD, Qian WJ. Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells. Communications Biology. 1: 103. PMID 30271983 DOI: 10.1038/s42003-018-0107-6  0.36
2018 Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343  0.72
2018 Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss T, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BJ, Metz TO, et al. QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data. Molecular & Cellular Proteomics : McP. PMID 29666158 DOI: 10.1074/Mcp.Ra118.000648  0.72
2018 Menachery VD, Schäfer A, Burnum-Johnson KE, Mitchell HD, Eisfeld AJ, Walters KB, Nicora CD, Purvine SO, Casey CP, Monroe ME, Weitz KK, Stratton KG, Webb-Robertson BM, Gralinski LE, Metz TO, ... Smith RD, et al. MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339515 DOI: 10.1073/Pnas.1706928115  0.72
2017 Shi T, Quek SI, Gao Y, Nicora CD, Nie S, Fillmore TL, Liu T, Rodland KD, Smith RD, Leach RJ, Thompson IM, Vitello EA, Ellis WJ, Liu AY, Qian WJ. Multiplexed targeted mass spectrometry assays for prostate cancer-associated urinary proteins. Oncotarget. 8: 101887-101898. PMID 29254211 DOI: 10.18632/Oncotarget.21710  0.36
2017 Prabhakaran A, Hamid AM, Garimella SVB, Valenzuela BR, Ewing RG, Ibrahim YM, Smith RD. A Hybrid Constant and Oscillatory Field Ion Mobility Analyzer Using Structures for Lossless Ion Manipulations. Journal of the American Society For Mass Spectrometry. PMID 29235041 DOI: 10.1007/S13361-017-1841-6  0.4
2017 Eisfeld AJ, Halfmann PJ, Wendler JP, Kyle JE, Burnum-Johnson KE, Peralta Z, Maemura T, Walters KB, Watanabe T, Fukuyama S, Yamashita M, Jacobs JM, Kim YM, Casey CP, Stratton KG, ... ... Smith RD, et al. Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis. Cell Host & Microbe. PMID 29154144 DOI: 10.1016/J.Chom.2017.10.011  0.72
2017 Gao Y, Wang H, Nicora CD, Shi T, Smith RD, Sigdel TK, Sarwal MM, Camp DG, Qian WJ. LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers. Methods in Molecular Biology (Clifton, N.J.). PMID 29116567 DOI: 10.1007/7651_2017_93  0.36
2017 Kerkhoven EJ, Kim YM, Wei S, Nicora CD, Fillmore TL, Purvine SO, Webb-Robertson BJ, Smith RD, Baker SE, Metz TO, Nielsen J. Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica. Mbio. 8. PMID 28634240 DOI: 10.1128/Mbio.00857-17  0.72
2017 Garimella SVB, Webb IK, Prabhakaran A, Attah IK, Ibrahim YM, Smith RD. Design of a TW-SLIM Module for Dual Polarity Confinement, Transport, and Reactions. Journal of the American Society For Mass Spectrometry. PMID 28560562 DOI: 10.1007/S13361-017-1680-5  0.4
2017 Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. PIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association. Bioinformatics (Oxford, England). PMID 28505286 DOI: 10.1093/Bioinformatics/Btx305  0.72
2017 Ibrahim YM, Hamid AM, Cox JT, Garimella SV, Smith RD. Ion Elevators and Escalators in Multilevel Structures for Lossless Ion Manipulations. Analytical Chemistry. 89: 1972-1977. PMID 28208272 DOI: 10.1021/Acs.Analchem.6B04500  0.4
2017 Kyle JE, Crowell KL, Casey CP, Fujimoto GM, Kim S, Dautel SE, Smith RD, Payne SH, Metz TO. LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data. Bioinformatics (Oxford, England). PMID 28158427 DOI: 10.1093/Bioinformatics/Btx046  0.72
2017 Burnum-Johnson KE, Kyle JE, Eisfeld AJ, Casey CP, Stratton KG, Gonzalez JF, Habyarimana F, Negretti NM, Sims AC, Chauhan S, Thackray LB, Halfmann PJ, Walters KB, Kim YM, Zink EM, ... ... Smith RD, et al. MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling. The Analyst. PMID 28091625 DOI: 10.1039/C6An02486F  0.72
2017 Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG. Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? Bioanalysis. 9: 81-98. PMID 27921453 DOI: 10.4155/Bio-2016-0244  0.72
2016 Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, ... ... Smith RD, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/J.Clinms.2016.11.002  0.72
2016 Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD. Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry. Chemistryselect. 1: 2396-2399. PMID 28936476 DOI: 10.1002/slct.201600460  0.52
2016 Ahmad R, Nicora CD, Shukla AK, Smith RD, Qian WJ, Liu AY. An efficient method for native protein purification in the selected range from prostate cancer tissue digests. Chinese Clinical Oncology. 5: 78. PMID 28061542 DOI: 10.21037/Cco.2016.12.03  0.36
2016 Madar IH, Ko SI, Kim H, Mun DG, Kim S, Smith RD, Lee SW. Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to increase sensitivity and accuracy in peptide identifications from tandem mass spectra of co-fragmentation. Analytical Chemistry. PMID 27966901 DOI: 10.1021/Acs.Analchem.6B03874  0.32
2016 Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, ... Smith RD, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/Rcm.7808  0.52
2016 Garimella SV, Hamid AM, Deng L, Ibrahim YM, Webb IK, Baker ES, Prost SA, Norheim RV, Anderson GA, Smith RD. Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming. Analytical Chemistry. 88: 11877-11885. PMID 27934097 DOI: 10.1021/Acs.Analchem.6B03660  0.44
2016 Wang J, Ma Z, Carr SA, Mertins P, Zhang H, Zhang Z, Chan DW, Ellis MJ, Townsend RR, Smith RD, McDermott JE, Chen X, Paulovich AG, Boja ES, Mesri M, et al. Proteome profiling outperforms transcriptome profiling for co-expression based gene function prediction. Molecular & Cellular Proteomics : McP. PMID 27836980 DOI: 10.1074/Mcp.M116.060301  0.32
2016 Smith DP, Nicora CD, Carini P, Lipton MS, Norbeck AD, Smith RD, Giovannoni SJ. Proteome Remodeling in Response to Sulfur Limitation in "Candidatus Pelagibacter ubique". Msystems. 1. PMID 27822545 DOI: 10.1128/mSystems.00068-16  0.36
2016 Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. Msystems. 1. PMID 27822525 DOI: 10.1128/mSystems.00043-16  0.72
2016 Deng L, Ibrahim YM, Garimella SV, Webb IK, Hamid AM, Norheim RV, Prost SA, Sandoval JA, Baker ES, Smith RD. Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27715008 DOI: 10.1021/Acs.Analchem.6B02678  0.44
2016 Khadempour L, Burnum-Johnson KE, Baker ES, Nicora CD, Webb-Robertson BM, White RA, Monroe ME, Huang EL, Smith RD, Currie CR. The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. Molecular Ecology. PMID 27696597 DOI: 10.1111/Mec.13872  0.52
2016 Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, et al. Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol. Nature Microbiology. 1: 16210. PMID 27694837 DOI: 10.1038/nmicrobiol.2016.210  0.36
2016 Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, ... Smith RD, et al. Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 27670688 DOI: 10.1074/Mcp.M116.061143  0.52
2016 Dhondt I, Petyuk VA, Cai H, Vandemeulebroucke L, Vierstraete A, Smith RD, Depuydt G, Braeckman BP. FOXO/DAF-16 Activation Slows Down Turnover of the Majority of Proteins in C. elegans. Cell Reports. 16: 3028-3040. PMID 27626670 DOI: 10.1016/J.Celrep.2016.07.088  0.72
2016 Hasin-Brumshtein Y, Khan AH, Hormozdiari F, Pan C, Parks BW, Petyuk VA, Piehowski PD, Bruemmer A, Pellegrini M, Xiao X, Eskin E, Smith RD, Lusis AJ, Smith DJ. Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes. Elife. 5. PMID 27623010 DOI: 10.7554/Elife.15614  0.72
2016 Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES. Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. Analytical and Bioanalytical Chemistry. PMID 27604268 DOI: 10.1007/S00216-016-9866-4  0.72
2016 Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, et al. The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol. Nature Microbiology. 1: 16065. PMID 27573103 DOI: 10.1038/Nmicrobiol.2016.65  0.72
2016 Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13-m Serpentine Path Length Structures for Lossless Ion Manipulations Module. Analytical Chemistry. PMID 27531027 DOI: 10.1021/Acs.Analchem.6B01915  0.72
2016 Hamid AM, Garimella SV, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD. Achieving high resolution ion mobility separations using traveling waves in compact multi-turn Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27479234 DOI: 10.1021/Acs.Analchem.6B01914  0.72
2016 Waltman PH, Guo J, Reistetter EN, Purvine S, Ansong CK, van Baren MJ, Wong CH, Wei CL, Smith RD, Callister SJ, Stuart JM, Worden AZ. Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla. Plos One. 11: e0155839. PMID 27434306 DOI: 10.1371/Journal.Pone.0155839  0.72
2016 Shi T, Niepel M, McDermott JE, Gao Y, Nicora CD, Chrisler WB, Markillie LM, Petyuk VA, Smith RD, Rodland KD, Sorger PK, Qian WJ, Wiley HS. Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway. Science Signaling. 9: rs6. PMID 27405981 DOI: 10.1126/Scisignal.Aaf0891  0.72
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, ... ... Smith RD, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/J.Cell.2016.05.069  0.72
2016 Shi T, Song E, Nie S, Rodland KD, Liu T, Qian WJ, Smith RD. Advances in targeted proteomics and applications to biomedical research. Proteomics. PMID 27302376 DOI: 10.1002/Pmic.201500449  0.72
2016 Sigdel TK, Gao Y, He J, Wang A, Nicora CD, Fillmore TL, Shi T, Webb-Robertson BJ, Smith RD, Qian WJ, Salvatierra O, Camp DG, Sarwal MM. Mining the human urine proteome for monitoring renal transplant injury. Kidney International. PMID 27165815 DOI: 10.1016/J.Kint.2015.12.049  0.72
2016 Webb IK, Garimella SV, Norheim RV, Baker ES, Ibrahim YM, Smith RD. A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation. Journal of the American Society For Mass Spectrometry. PMID 27098413 DOI: 10.1007/S13361-016-1397-X  0.72
2016 Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB. Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium. Molecular & Cellular Proteomics : McP. PMID 27056914 DOI: 10.1074/Mcp.M115.057240  0.72
2016 Garimella SV, Ibrahim YM, Tang K, Webb IK, Baker ES, Tolmachev AV, Chen TC, Anderson GA, Smith RD. Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27052738 DOI: 10.1007/S13361-016-1371-7  0.72
2016 van Baren MJ, Bachy C, Reistetter EN, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev IV, Wong CH, Smith RD, Callister SJ, Wei CL, et al. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. Bmc Genomics. 17: 267. PMID 27029936 DOI: 10.1186/S12864-016-2585-6  0.48
2016 Nielson CM, Jones KS, Chun RF, Jacobs JM, Wang Y, Hewison M, Adams JS, Swanson CM, Lee CG, Vanderschueren D, Pauwels S, Prentice A, Smith RD, Shi T, Gao Y, et al. Free 25-hydroxyvitamin D: impact of vitamin D binding protein assays on racial-genotypic associations. The Journal of Clinical Endocrinology and Metabolism. jc20161104. PMID 27007693 DOI: 10.1210/Jc.2016-1104  0.72
2016 Liu R, Chen S, Baker ES, Smith RD, Zeng XC, Gong B. Correction: Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 27003741 DOI: 10.1039/C6Cc90142E  0.44
2016 Chan CY, Gritsenko MA, Smith RD, Qian WJ. The current state of the art of quantitative phosphoproteomics and its applications to diabetes research. Expert Review of Proteomics. PMID 26960075 DOI: 10.1586/14789450.2016.1164604  0.72
2016 Wu C, Duan J, Liu T, Smith RD, Qian WJ. Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. PMID 26868616 DOI: 10.1016/J.Jchromb.2016.01.015  0.72
2016 Gritsenko MA, Xu Z, Liu T, Smith RD. Large-Scale and Deep Quantitative Proteome Profiling Using Isobaric Labeling Coupled with Two-Dimensional LC-MS/MS. Methods in Molecular Biology (Clifton, N.J.). 1410: 237-47. PMID 26867748 DOI: 10.1007/978-1-4939-3524-6_14  0.72
2016 Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Boja E, Carr SA, Chan DW, ... ... Smith RD, et al. Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays. Methods in Molecular Biology (Clifton, N.J.). 1410: 223-36. PMID 26867747 DOI: 10.1007/978-1-4939-3524-6_13  0.72
2016 Tisoncik-Go J, Gasper DJ, Kyle JE, Eisfeld AJ, Selinger C, Hatta M, Morrison J, Korth MJ, Zink EM, Kim YM, Schepmoes AA, Nicora CD, Purvine SO, Weitz KK, Peng X, ... ... Smith RD, et al. Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism. Cell Host & Microbe. 19: 254-66. PMID 26867183 DOI: 10.1016/J.Chom.2016.01.002  0.72
2016 Liu R, Cheng S, Baker ES, Smith RD, Zeng XC, Gong B. Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 26830456 DOI: 10.1039/C6Cc00224B  0.72
2016 Kyle JE, Zhang X, Weitz KK, Monroe ME, Ibrahim YM, Moore RJ, Cha J, Sun X, Lovelace ES, Wagoner J, Polyak SJ, Metz TO, Dey SK, Smith RD, Burnum-Johnson KE, et al. Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. The Analyst. PMID 26734689 DOI: 10.1039/C5An02062J  0.4
2016 Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E, Chen J, Crimmins DL, Davies SR, Gao Y, Hiltke TR, ... ... Smith RD, et al. Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays. Clinical Chemistry. 62: 48-69. PMID 26719571 DOI: 10.1373/Clinchem.2015.250563  0.4
2015 El Ouaamari A, Dirice E, Gedeon N, Hu J, Zhou JY, Shirakawa J, Hou L, Goodman J, Karampelias C, Qiang G, Boucher J, Martinez R, Gritsenko MA, De Jesus DF, Kahraman S, ... ... Smith RD, et al. SerpinB1 Promotes Pancreatic β Cell Proliferation. Cell Metabolism. PMID 26701651 DOI: 10.1016/J.Cmet.2015.12.001  0.72
2015 Duan J, Kodali VK, Gaffrey MJ, Guo J, Chu RK, Camp DG, Smith RD, Thrall BD, Qian WJ. Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function during Nanoparticle-Induced Oxidative Stress. Acs Nano. PMID 26700264 DOI: 10.1021/Acsnano.5B05524  0.72
2015 Tabb DL, Wang X, Carr SA, Clauser KR, Mertins P, Chambers MC, Holman JD, Wang J, Zhang B, Zimmerman LJ, Chen X, Gunawardena HP, Davies SR, Ellis MJ, Li S, ... ... Smith RD, et al. Reproducibility of differential proteomic technologies in CPTAC fractionated xenografts. Journal of Proteome Research. PMID 26653538 DOI: 10.1021/Acs.Jproteome.5B00859  0.4
2015 Ruggles KV, Tang Z, Wang X, Grover H, Askenazi M, Teubl J, Cao S, McLellan MD, Clauser KR, Tabb DL, Mertins P, Slebos R, Erdmann-Gilmore P, Li S, Gunawardena HP, ... ... Smith RD, et al. An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer. Molecular & Cellular Proteomics : McP. PMID 26631509 DOI: 10.1074/Mcp.M115.056226  0.72
2015 Burnet MC, Dohnalkova AC, Neumann AP, Lipton MS, Smith RD, Suen G, Callister SJ. Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85. Plos One. 10: e0143809. PMID 26629814 DOI: 10.1371/Journal.Pone.0143809  0.72
2015 Wang H, Shi T, Qian WJ, Liu T, Kagan J, Srivastava S, Smith RD, Rodland KD, Camp DG. The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification. Expert Review of Proteomics. PMID 26581546 DOI: 10.1586/14789450.2016.1122529  0.72
2015 Annesley T, Diamandis E, Bachmann L, Hanash S, Hart B, Javahery R, Singh R, Smith R. A Spectrum of Views on Clinical Mass Spectrometry. Clinical Chemistry. PMID 26553793 DOI: 10.1373/Clinchem.2015.250258  0.4
2015 Lin TY, Anderson GA, Norheim RV, Prost SA, LaMarche BL, Leach FE, Auberry KJ, Smith RD, Koppenaal DW, Robinson EW, Paša-Tolić L. An adaptable multiple power source for mass spectrometry and other scientific instruments. The Review of Scientific Instruments. 86: 094102. PMID 26429459 DOI: 10.1063/1.4930967  0.72
2015 Aylward FO, Khadempour L, Tremmel DM, McDonald BR, Nicora CD, Wu S, Moore RJ, Orton DJ, Monroe ME, Piehowski PD, Purvine SO, Smith RD, Lipton MS, Burnum-Johnson KE, Currie CR. Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. Plos One. 10: e0134752. PMID 26317212 DOI: 10.1371/Journal.Pone.0134752  0.72
2015 Payne SH, Monroe ME, Overall CC, Kiebel GR, Degan M, Gibbons BC, Fujimoto GM, Purvine SO, Adkins JN, Lipton MS, Smith RD. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity. Scientific Data. 2: 150041. PMID 26306205 DOI: 10.1038/Sdata.2015.41  0.72
2015 Bhatt S, Gupta MK, Khamaisi M, Martinez R, Gritsenko MA, Wagner BK, Guye P, Busskamp V, Shirakawa J, Wu G, Liew CW, Clauss TR, Valdez I, El Ouaamari A, Dirice E, ... ... Smith RD, et al. Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes. Cell Metabolism. 22: 239-52. PMID 26244933 DOI: 10.1016/J.Cmet.2015.07.015  0.32
2015 Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold RH, Smith RD, Noble WS, MacCoss MJ. Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data. Molecular & Cellular Proteomics : McP. PMID 26217018 DOI: 10.1074/Mcp.O114.047035  0.72
2015 El Ouaamari A, Zhou J, Liew CW, Shirakawa J, Dirice E, Gedeon N, Kahraman S, De Jesus DF, Bhatt S, Kim JS, Clauss TR, Camp DG, Smith RD, Qian WJ, Kulkarni RN. Compensatory Islet Response to Insulin Resistance Revealed by Quantitative Proteomics. Journal of Proteome Research. PMID 26151086 DOI: 10.1021/Acs.Jproteome.5B00587  0.72
2015 Nakayasu ES, Sydor MA, Brown RN, Sontag RL, Sobreira TJ, Slysz GW, Humphrys DR, Skarina T, Onoprienko O, Di Leo R, Kaiser BL, Li J, Ansong C, Cambronne ED, Smith RD, et al. Identification of Salmonella Typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis. Journal of Proteome Research. PMID 26147956 DOI: 10.1021/Acs.Jproteome.5B00574  0.72
2015 Zhang X, Ibrahim YM, Chen TC, Kyle JE, Norheim RV, Monroe ME, Smith RD, Baker ES. Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations. The Analyst. PMID 26140287 DOI: 10.1039/C5An00897B  0.72
2015 Vrablik TL, Petyuk VA, Larson EM, Smith RD, Watts JL. Lipidomic and proteomic analysis of Caenorhabditis elegans lipid droplets and identification of ACS-4 as a lipid droplet-associated protein. Biochimica Et Biophysica Acta. PMID 26121959 DOI: 10.1016/J.Bbalip.2015.06.004  0.72
2015 Kebaabetswe LP, Haick AK, Gritsenko MA, Fillmore TL, Chu RK, Purvine SO, Webb-Robertson BJ, Matzke MM, Smith RD, Waters KM, Metz TO, Miura TA. Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus. Virology. 483: 96-107. PMID 25965799 DOI: 10.1016/J.Virol.2015.03.045  0.72
2015 Webb-Robertson BJ, Wiberg HK, Matzke MM, Brown JN, Wang J, McDermott JE, Smith RD, Rodland KD, Metz TO, Pounds JG, Waters KM. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. Journal of Proteome Research. 14: 1993-2001. PMID 25855118 DOI: 10.1021/Pr501138H  0.72
2015 Yu J, Liberton M, Cliften PF, Head RD, Jacobs JM, Smith RD, Koppenaal DW, Brand JJ, Pakrasi HB. Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO₂. Scientific Reports. 5: 8132. PMID 25633131 DOI: 10.1038/Srep08132  0.72
2015 Chen Y, Leach FE, Kaiser NK, Dang X, Ibrahim YM, Norheim RV, Anderson GA, Smith RD, Marshall AG. Improved ion optics for introduction of ions into a 9.4-T Fourier transform ion cyclotron resonance mass spectrometer. Journal of Mass Spectrometry : Jms. 50: 280-4. PMID 25601704 DOI: 10.1002/Jms.3523  0.72
2015 Shi T, Gao Y, Gaffrey MJ, Nicora CD, Fillmore TL, Chrisler WB, Gritsenko MA, Wu C, He J, Bloodsworth KJ, Zhao R, Camp DG, Liu T, Rodland KD, Smith RD, et al. Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment. Analytical Chemistry. 87: 1103-10. PMID 25517423 DOI: 10.1021/Ac503797X  0.72
2015 Merkley ED, Wrighton KC, Castelle CJ, Anderson BJ, Wilkins MJ, Shah V, Arbour T, Brown JN, Singer SW, Smith RD, Lipton MS. Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis. Journal of Proteome Research. 14: 1361-75. PMID 25496566 DOI: 10.1021/Pr500983V  0.72
2015 Chen TC, Webb IK, Prost SA, Harrer MB, Norheim RV, Tang K, Ibrahim YM, Smith RD. Rectangular ion funnel: a new ion funnel interface for structures for lossless ion manipulations. Analytical Chemistry. 87: 716-22. PMID 25409343 DOI: 10.1021/ac503564c  0.72
2015 Cox JT, Marginean I, Smith RD, Tang K. On the ionization and ion transmission efficiencies of different ESI-MS interfaces. Journal of the American Society For Mass Spectrometry. 26: 55-62. PMID 25267087 DOI: 10.1007/S13361-014-0998-5  0.72
2015 Bhatt S, Gupta MK, Khamaisi M, Martinez R, Gritsenko MA, Wagner BK, Guye P, Busskamp V, Shirakawa J, Wu G, Liew CW, Clauss TR, Valdez I, El Ouaamari A, Dirice E, ... ... Smith RD, et al. Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes Cell Metabolism. 22: 239-252. DOI: 10.1016/j.cmet.2015.07.015  0.72
2015 Wu C, Liu T, Baker ES, Rodland KD, Smith RD. Mass spectrometry for biomarker development General Methods in Biomarker Research and Their Applications. 1: 17-48. DOI: 10.1007/978-94-007-7696-8_21  0.72
2014 Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, ... ... Smith RD, et al. A comprehensive collection of systems biology data characterizing the host response to viral infection. Scientific Data. 1: 140033. PMID 25977790 DOI: 10.1038/Sdata.2014.33  0.72
2014 Sigdel TK, Ng YW, Lee S, Nicora CD, Qian WJ, Smith RD, Camp DG, Sarwal MM. Perturbations in the urinary exosome in transplant rejection. Frontiers in Medicine. 1: 57. PMID 25593928 DOI: 10.3389/Fmed.2014.00057  0.36
2014 Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Bayesian proteoform modeling improves protein quantification of global proteomic measurements. Molecular & Cellular Proteomics : McP. 13: 3639-46. PMID 25433089 DOI: 10.1074/Mcp.M113.030932  0.72
2014 Jonkers W, Leeder AC, Ansong C, Wang Y, Yang F, Starr TL, Camp DG, Smith RD, Glass NL. HAM-5 functions as a MAP kinase scaffold during cell fusion in Neurospora crassa. Plos Genetics. 10: e1004783. PMID 25412208 DOI: 10.1371/Journal.Pgen.1004783  0.72
2014 Shin AC, Fasshauer M, Filatova N, Grundell LA, Zielinski E, Zhou JY, Scherer T, Lindtner C, White PJ, Lapworth AL, Ilkayeva O, Knippschild U, Wolf AM, Scheja L, Grove KL, ... Smith RD, et al. Brain insulin lowers circulating BCAA levels by inducing hepatic BCAA catabolism. Cell Metabolism. 20: 898-909. PMID 25307860 DOI: 10.1016/J.Cmet.2014.09.003  0.72
2014 Brown JN, Brewer HM, Nicora CD, Weitz KK, Morris MJ, Skabelund AJ, Adkins JN, Smith RD, Cho JH, Gelinas R. Protein and microRNA biomarkers from lavage, urine, and serum in military personnel evaluated for dyspnea. Bmc Medical Genomics. 7: 58. PMID 25282157 DOI: 10.1186/1755-8794-7-58  0.72
2014 He J, Sun X, Shi T, Schepmoes AA, Fillmore TL, Petyuk VA, Xie F, Zhao R, Gritsenko MA, Yang F, Kitabayashi N, Chae SS, Rubin MA, Siddiqui J, Wei JT, ... ... Smith RD, et al. Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer. Molecular Oncology. 8: 1169-80. PMID 25266362 DOI: 10.1016/J.Molonc.2014.02.004  0.72
2014 Woo S, Cha SW, Na S, Guest C, Liu T, Smith RD, Rodland KD, Payne S, Bafna V. Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data. Proteomics. 14: 2719-30. PMID 25263569 DOI: 10.1002/Pmic.201400206  0.72
2014 Garimella SV, Ibrahim YM, Webb IK, Tolmachev AV, Zhang X, Prost SA, Anderson GA, Smith RD. Simulation of electric potentials and ion motion in planar electrode structures for lossless ion manipulations (SLIM). Journal of the American Society For Mass Spectrometry. 25: 1890-6. PMID 25257188 DOI: 10.1007/S13361-014-0976-Y  0.72
2014 Cox JT, Kronewitter SR, Shukla AK, Moore RJ, Smith RD, Tang K. High sensitivity combined with extended structural coverage of labile compounds via nanoelectrospray ionization at subambient pressures. Analytical Chemistry. 86: 9504-11. PMID 25222651 DOI: 10.1021/Ac502767Y  0.72
2014 Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Cox JT, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD. Mobility-resolved ion selection in uniform drift field ion mobility spectrometry/mass spectrometry: dynamic switching in structures for lossless ion manipulations. Analytical Chemistry. 86: 9632-7. PMID 25222548 DOI: 10.1021/Ac502139E  0.72
2014 Tolmachev AV, Webb IK, Ibrahim YM, Garimella SV, Zhang X, Anderson GA, Smith RD. Characterization of ion dynamics in structures for lossless ion manipulations. Analytical Chemistry. 86: 9162-8. PMID 25152178 DOI: 10.1021/Ac502054P  0.72
2014 Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD. Experimental evaluation and optimization of structures for lossless ion manipulations for ion mobility spectrometry with time-of-flight mass spectrometry. Analytical Chemistry. 86: 9169-76. PMID 25152066 DOI: 10.1021/Ac502055E  0.72
2014 Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Moore RJ, Hixson KK, Kim JS, Petyuk VA, Monroe ME, Pasa-Tolic L, Qian WJ, Smith RD, Adkins JN, Ansong C. A method to determine lysine acetylation stoichiometries. International Journal of Proteomics. 2014: 730725. PMID 25143833 DOI: 10.1155/2014/730725  0.48
2014 Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements. Molecular & Cellular Proteomics : McP. PMID 25129695 DOI: 10.1074/mcp.O113.030932  0.72
2014 Guo J, Nguyen AY, Dai Z, Su D, Gaffrey MJ, Moore RJ, Jacobs JM, Monroe ME, Smith RD, Koppenaal DW, Pakrasi HB, Qian WJ. Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics. Molecular & Cellular Proteomics : McP. 13: 3270-85. PMID 25118246 DOI: 10.1074/Mcp.M114.041160  0.72
2014 Ansong C, Sadler NC, Hill EA, Lewis MP, Zink EM, Smith RD, Beliaev AS, Konopka AE, Wright AT. Characterization of protein redox dynamics induced during light-to-dark transitions and nutrient limitation in cyanobacteria. Frontiers in Microbiology. 5: 325. PMID 25071738 DOI: 10.3389/Fmicb.2014.00325  0.72
2014 Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, et al. Proteogenomic characterization of human colon and rectal cancer. Nature. 513: 382-7. PMID 25043054 DOI: 10.1038/Nature13438  0.72
2014 Huang EL, Aylward FO, Kim YM, Webb-Robertson BJ, Nicora CD, Hu Z, Metz TO, Lipton MS, Smith RD, Currie CR, Burnum-Johnson KE. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environmental Microbiology Reports. 6: 389-95. PMID 24992538 DOI: 10.1111/1758-2229.12163  0.72
2014 Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Rodriguez H, Paulovich AG. CPTAC Assay Portal: a repository of targeted proteomic assays. Nature Methods. 11: 703-4. PMID 24972168 DOI: 10.1038/nmeth.3002  0.72
2014 Ryu SY, Qian WJ, Camp DG, Smith RD, Tompkins RG, Davis RW, Xiao W. Detecting differential protein expression in large-scale population proteomics. Bioinformatics (Oxford, England). 30: 2741-6. PMID 24928210 DOI: 10.1093/Bioinformatics/Btu341  0.72
2014 Xiong Y, Coradetti ST, Li X, Gritsenko MA, Clauss T, Petyuk V, Camp D, Smith R, Cate JH, Yang F, Glass NL. The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation. Fungal Genetics and Biology : Fg & B. 72: 21-33. PMID 24881580 DOI: 10.1016/J.Fgb.2014.05.005  0.72
2014 Aryal UK, Callister SJ, McMahon BH, McCue LA, Brown J, Stöckel J, Liberton M, Mishra S, Zhang X, Nicora CD, Angel TE, Koppenaal DW, Smith RD, Pakrasi HB, Sherman LA. Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece. Journal of Proteome Research. 13: 3262-76. PMID 24846609 DOI: 10.1021/Pr5000889  0.72
2014 Menachery VD, Eisfeld AJ, Schäfer A, Josset L, Sims AC, Proll S, Fan S, Li C, Neumann G, Tilton SC, Chang J, Gralinski LE, Long C, Green R, Williams CM, ... ... Smith RD, et al. Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses. Mbio. 5: e01174-14. PMID 24846384 DOI: 10.1128/Mbio.01174-14  0.72
2014 Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH. Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. Journal of the American Society For Mass Spectrometry. 25: 2020-7. PMID 24796262 DOI: 10.1007/S13361-014-0895-Y  0.72
2014 Ibrahim YM, Garimella SV, Tolmachev AV, Baker ES, Smith RD. Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap. Analytical Chemistry. 86: 5295-9. PMID 24786390 DOI: 10.1021/Ac404250Z  0.72
2014 Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ, Levine DA, Townsend R, Erdmann-Gilmore P, Snider JE, Davies SR, ... ... Smith RD, et al. Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels. Molecular & Cellular Proteomics : McP. 13: 1690-704. PMID 24719451 DOI: 10.1074/Mcp.M113.036392  0.72
2014 Dominy SS, Brown JN, Ryder MI, Gritsenko M, Jacobs JM, Smith RD. Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition. Plos One. 9: e89366. PMID 24717448 DOI: 10.1371/Journal.Pone.0089366  0.72
2014 Malouli D, Hansen SG, Nakayasu ES, Marshall EE, Hughes CM, Ventura AB, Gilbride RM, Lewis MS, Xu G, Kreklywich C, Whizin N, Fischer M, Legasse AW, Viswanathan K, Siess D, ... ... Smith RD, et al. Cytomegalovirus pp65 limits dissemination but is dispensable for persistence. The Journal of Clinical Investigation. 124: 1928-44. PMID 24691437 DOI: 10.1172/Jci67420  0.72
2014 Smith JS, Angel TE, Chavkin C, Orton DJ, Moore RJ, Smith RD. Characterization of individual mouse cerebrospinal fluid proteomes. Proteomics. 14: 1102-6. PMID 24677814 DOI: 10.1002/Pmic.201300241  0.72
2014 Cox JT, Marginean I, Kelly RT, Smith RD, Tang K. Improving the sensitivity of mass spectrometry by using a new sheath flow electrospray emitter array at subambient pressures. Journal of the American Society For Mass Spectrometry. 25: 2028-37. PMID 24676894 DOI: 10.1007/S13361-014-0856-5  0.72
2014 Zhang Q, Matzke M, Schepmoes AA, Moore RJ, Webb-Robertson BJ, Hu Z, Monroe ME, Qian WJ, Smith RD, Morgan WF. High and low doses of ionizing radiation induce different secretome profiles in a human skin model. Plos One. 9: e92332. PMID 24642900 DOI: 10.1371/Journal.Pone.0092332  0.72
2014 Smith RD. Honoring Dr. Jean H. Futrell. Journal of the American Society For Mass Spectrometry. 25: 699-701. PMID 24627182 DOI: 10.1007/S13361-014-0829-8  0.72
2014 Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH. Signatures for mass spectrometry data quality. Journal of Proteome Research. 13: 2215-22. PMID 24611607 DOI: 10.1021/Pr401143E  0.72
2014 Wu S, Brown JN, Tolić N, Meng D, Liu X, Zhang H, Zhao R, Moore RJ, Pevzner P, Smith RD, Paša-Tolić L. Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry. Proteomics. 14: 1211-22. PMID 24591407 DOI: 10.1002/Pmic.201300378  0.72
2014 Martin JL, Yates PA, Soysa R, Alfaro JF, Yang F, Burnum-Johnson KE, Petyuk VA, Weitz KK, Camp DG, Smith RD, Wilmarth PA, David LL, Ramasamy G, Myler PJ, Carter NS. Metabolic reprogramming during purine stress in the protozoan pathogen Leishmania donovani. Plos Pathogens. 10: e1003938. PMID 24586154 DOI: 10.1371/Journal.Ppat.1003938  0.72
2014 Depuydt G, Xie F, Petyuk VA, Smolders A, Brewer HM, Camp DG, Smith RD, Braeckman BP. LC-MS proteomics analysis of the insulin/IGF-1-deficient Caenorhabditis elegans daf-2(e1370) mutant reveals extensive restructuring of intermediary metabolism. Journal of Proteome Research. 13: 1938-56. PMID 24555535 DOI: 10.1021/Pr401081B  0.72
2014 Wiedner SD, Anderson LN, Sadler NC, Chrisler WB, Kodali VK, Smith RD, Wright AT. Organelle-specific activity-based protein profiling in living cells. Angewandte Chemie (International Ed. in English). 53: 2919-22. PMID 24505022 DOI: 10.1002/Anie.201309135  0.72
2014 Webb IK, Chen TC, Danielson WF, Ibrahim YM, Tang K, Anderson GA, Smith RD. Implementation of dipolar resonant excitation for collision induced dissociation with ion mobility/time-of-flight MS. Journal of the American Society For Mass Spectrometry. 25: 563-71. PMID 24470195 DOI: 10.1007/S13361-013-0815-6  0.72
2014 Slysz GW, Steinke L, Ward DM, Klatt CG, Clauss TR, Purvine SO, Payne SH, Anderson GA, Smith RD, Lipton MS. Automated data extraction from in situ protein-stable isotope probing studies. Journal of Proteome Research. 13: 1200-10. PMID 24467184 DOI: 10.1021/Pr400633J  0.72
2014 Shvartsburg AA, Ibrahim YM, Smith RD. Differential ion mobility separations in up to 100% helium using microchips. Journal of the American Society For Mass Spectrometry. 25: 480-9. PMID 24402673 DOI: 10.1007/S13361-013-0797-4  0.72
2014 Granholm V, Kim S, Navarro JC, Sjölund E, Smith RD, Käll L. Fast and accurate database searches with MS-GF+Percolator. Journal of Proteome Research. 13: 890-7. PMID 24344789 DOI: 10.1021/Pr400937N  0.72
2014 Guo J, Gaffrey MJ, Su D, Liu T, Camp DG, Smith RD, Qian WJ. Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications. Nature Protocols. 9: 64-75. PMID 24336471 DOI: 10.1038/Nprot.2013.161  0.72
2014 Sigdel TK, Salomonis N, Nicora CD, Ryu S, He J, Dinh V, Orton DJ, Moore RJ, Hsieh SC, Dai H, Thien-Vu M, Xiao W, Smith RD, Qian WJ, Camp DG, et al. The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics. Molecular & Cellular Proteomics : McP. 13: 621-31. PMID 24335474 DOI: 10.1074/Mcp.M113.030577  0.72
2014 Su D, Gaffrey MJ, Guo J, Hatchell KE, Chu RK, Clauss TR, Aldrich JT, Wu S, Purvine S, Camp DG, Smith RD, Thrall BD, Qian WJ. Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling. Free Radical Biology & Medicine. 67: 460-70. PMID 24333276 DOI: 10.1016/J.Freeradbiomed.2013.12.004  0.72
2014 Fujimoto GM, Monroe ME, Rodriguez L, Wu C, MacLean B, Smith RD, MacCoss MJ, Payne SH. Accounting for population variation in targeted proteomics. Journal of Proteome Research. 13: 321-3. PMID 24320210 DOI: 10.1021/Pr4011052  0.72
2014 Zaborin A, Defazio JR, Kade M, Kaiser BL, Belogortseva N, Camp DG, Smith RD, Adkins JN, Kim SM, Alverdy A, Goldfeld D, Firestone MA, Collier JH, Jabri B, Tirrell M, et al. Phosphate-containing polyethylene glycol polymers prevent lethal sepsis by multidrug-resistant pathogens. Antimicrobial Agents and Chemotherapy. 58: 966-77. PMID 24277029 DOI: 10.1128/Aac.02183-13  0.72
2014 Shi T, Gao Y, Quek SI, Fillmore TL, Nicora CD, Su D, Zhao R, Kagan J, Srivastava S, Rodland KD, Liu T, Smith RD, Chan DW, Camp DG, Liu AY, et al. A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum. Journal of Proteome Research. 13: 875-82. PMID 24251762 DOI: 10.1021/Pr400912C  0.72
2014 Sadler NC, Melnicki MR, Serres MH, Merkley ED, Chrisler WB, Hill EA, Romine MF, Kim S, Zink EM, Datta S, Smith RD, Beliaev AS, Konopka A, Wright AT. Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium. Acs Chemical Biology. 9: 291-300. PMID 24168666 DOI: 10.1021/Cb400769V  0.72
2014 Marginean I, Tang K, Smith RD, Kelly RT. Picoelectrospray ionization mass spectrometry using narrow-bore chemically etched emitters. Journal of the American Society For Mass Spectrometry. 25: 30-6. PMID 24122304 DOI: 10.1007/S13361-013-0749-Z  0.72
2014 Merkley ED, Metz TO, Smith RD, Baynes JW, Frizzell N. The succinated proteome. Mass Spectrometry Reviews. 33: 98-109. PMID 24115015 DOI: 10.1002/Mas.21382  0.72
2013 Smith DP, Thrash JC, Nicora CD, Lipton MS, Burnum-Johnson KE, Carini P, Smith RD, Giovannoni SJ. Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium. Mbio. 4: e00133-12. PMID 24281717 DOI: 10.1128/Mbio.00133-12  0.72
2013 Anderson LN, Culley DE, Hofstad BA, Chauvigné-Hines LM, Zink EM, Purvine SO, Smith RD, Callister SJ, Magnuson JM, Wright AT. Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30. Molecular Biosystems. 9: 2992-3000. PMID 24121482 DOI: 10.1039/C3Mb70333A  0.72
2013 Dai Z, Aryal UK, Shukla A, Qian WJ, Smith RD, Magnuson JK, Adney WS, Beckham GT, Brunecky R, Himmel ME, Decker SR, Ju X, Zhang X, Baker SE. Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger. Fungal Genetics and Biology : Fg & B. 61: 120-32. PMID 24076077 DOI: 10.1016/J.Fgb.2013.09.004  0.72
2013 Schutzer SE, Angel TE, Liu T, Schepmoes AA, Xie F, Bergquist J, Vécsei L, Zadori D, Camp DG, Holland BK, Smith RD, Coyle PK. Gray matter is targeted in first-attack multiple sclerosis. Plos One. 8: e66117. PMID 24039694 DOI: 10.1371/Journal.Pone.0066117  0.72
2013 Shi T, Fillmore TL, Gao Y, Zhao R, He J, Schepmoes AA, Nicora CD, Wu C, Chambers JL, Moore RJ, Kagan J, Srivastava S, Liu AY, Rodland KD, Liu T, ... ... Smith RD, et al. Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis. Analytical Chemistry. 85: 9196-203. PMID 24004026 DOI: 10.1021/Ac402105S  0.72
2013 Depuydt G, Xie F, Petyuk VA, Shanmugam N, Smolders A, Dhondt I, Brewer HM, Camp DG, Smith RD, Braeckman BP. Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans. Molecular & Cellular Proteomics : McP. 12: 3624-39. PMID 24002365 DOI: 10.1074/Mcp.M113.027383  0.72
2013 Nakayasu ES, Tempel R, Cambronne XA, Petyuk VA, Jones MB, Gritsenko MA, Monroe ME, Yang F, Smith RD, Adkins JN, Heffron F. Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection. Molecular & Cellular Proteomics : McP. 12: 3297-309. PMID 23970565 DOI: 10.1074/Mcp.M113.029850  0.72
2013 Price RW, Peterson J, Fuchs D, Angel TE, Zetterberg H, Hagberg L, Spudich S, Smith RD, Jacobs JM, Brown JN, Gisslen M. Approach to cerebrospinal fluid (CSF) biomarker discovery and evaluation in HIV infection. Journal of Neuroimmune Pharmacology : the Official Journal of the Society On Neuroimmune Pharmacology. 8: 1147-58. PMID 23943280 DOI: 10.1007/S11481-013-9491-3  0.72
2013 Mitchell HD, Eisfeld AJ, Sims AC, McDermott JE, Matzke MM, Webb-Robertson BJ, Tilton SC, Tchitchek N, Josset L, Li C, Ellis AL, Chang JH, Heegel RA, Luna ML, Schepmoes AA, ... ... Smith RD, et al. A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses. Plos One. 8: e69374. PMID 23935999 DOI: 10.1371/Journal.Pone.0069374  0.72
2013 Sun X, Tang K, Smith RD, Kelly RT. Controlled dispensing and mixing of pico- to nanoliter volumes using on-demand droplet-based microfluidics. Microfluidics and Nanofluidics. 15: 117-126. PMID 23935562 DOI: 10.1007/S10404-012-1133-1  0.4
2013 Gralinski LE, Bankhead A, Jeng S, Menachery VD, Proll S, Belisle SE, Matzke M, Webb-Robertson BJ, Luna ML, Shukla AK, Ferris MT, Bolles M, Chang J, Aicher L, Waters KM, ... Smith RD, et al. Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. Mbio. 4. PMID 23919993 DOI: 10.1128/Mbio.00271-13  0.72
2013 Tchitchek N, Eisfeld AJ, Tisoncik-Go J, Josset L, Gralinski LE, Bécavin C, Tilton SC, Webb-Robertson BJ, Ferris MT, Totura AL, Li C, Neumann G, Metz TO, Smith RD, Waters KM, et al. Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. Bmc Systems Biology. 7: 69. PMID 23895213 DOI: 10.1186/1752-0509-7-69  0.72
2013 Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN. A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection. Plos One. 8: e67155. PMID 23840608 DOI: 10.1371/Journal.Pone.0067155  0.72
2013 Wang C, Lee CS, Smith RD, Tang K. Capillary isotachophoresis-nanoelectrospray ionization-selected reaction monitoring MS via a novel sheathless interface for high sensitivity sample quantification. Analytical Chemistry. 85: 7308-15. PMID 23789856 DOI: 10.1021/Ac401202C  0.72
2013 Nicora CD, Anderson BJ, Callister SJ, Norbeck AD, Purvine SO, Jansson JK, Mason OU, David MM, Jurelevicius D, Smith RD, Lipton MS. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics. 13: 2776-85. PMID 23776032 DOI: 10.1002/Pmic.201300003  0.72
2013 Kim JS, Dai Z, Aryal UK, Moore RJ, Camp DG, Baker SE, Smith RD, Qian WJ. Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing. Analytical Chemistry. 85: 6826-32. PMID 23772796 DOI: 10.1021/Ac401000Q  0.72
2013 Shi T, Sun X, Gao Y, Fillmore TL, Schepmoes AA, Zhao R, He J, Moore RJ, Kagan J, Rodland KD, Liu T, Liu AY, Smith RD, Tang K, Camp DG, et al. Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion. Journal of Proteome Research. 12: 3353-61. PMID 23763644 DOI: 10.1021/Pr400178V  0.72
2013 Ansong C, Wu S, Meng D, Liu X, Brewer HM, Deatherage Kaiser BL, Nakayasu ES, Cort JR, Pevzner P, Smith RD, Heffron F, Adkins JN, Pasa-Tolic L. Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions. Proceedings of the National Academy of Sciences of the United States of America. 110: 10153-8. PMID 23720318 DOI: 10.1073/Pnas.1221210110  0.72
2013 Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K. The genome organization of Thermotoga maritima reflects its lifestyle. Plos Genetics. 9: e1003485. PMID 23637642 DOI: 10.1371/Journal.Pgen.1003485  0.72
2013 Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD, Malfatti SA, Monroe ME, Purvine SO, Goodwin LA, Smith RD, et al. Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Applied and Environmental Microbiology. 79: 3770-8. PMID 23584789 DOI: 10.1128/Aem.03833-12  0.72
2013 Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, et al. Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes. Molecular Biosystems. 9: 1522-34. PMID 23559334 DOI: 10.1039/C3Mb25598K  0.72
2013 Piehowski PD, Petyuk VA, Orton DJ, Xie F, Moore RJ, Ramirez-Restrepo M, Engel A, Lieberman AP, Albin RL, Camp DG, Smith RD, Myers AJ. Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis. Journal of Proteome Research. 12: 2128-37. PMID 23495885 DOI: 10.1021/Pr301146M  0.72
2013 LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ, Metz TO, Anderson GA, Smith RD. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis. Bmc Bioinformatics. 14: 49. PMID 23398735 DOI: 10.1186/1471-2105-14-49  0.72
2013 Niemann GS, Brown RN, Mushamiri IT, Nguyen NT, Taiwo R, Stufkens A, Smith RD, Adkins JN, McDermott JE, Heffron F. RNA type III secretion signals that require Hfq. Journal of Bacteriology. 195: 2119-25. PMID 23396917 DOI: 10.1128/Jb.00024-13  0.72
2013 Sims AC, Tilton SC, Menachery VD, Gralinski LE, Schäfer A, Matzke MM, Webb-Robertson BJ, Chang J, Luna ML, Long CE, Shukla AK, Bankhead AR, Burkett SE, Zornetzer G, Tseng CT, ... ... Smith RD, et al. Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. Journal of Virology. 87: 3885-902. PMID 23365422 DOI: 10.1128/Jvi.02520-12  0.72
2013 Ansong C, Ortega C, Payne SH, Haft DH, Chauvignè-Hines LM, Lewis MP, Ollodart AR, Purvine SO, Shukla AK, Fortuin S, Smith RD, Adkins JN, Grundner C, Wright AT. Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis. Chemistry & Biology. 20: 123-33. PMID 23352146 DOI: 10.1016/J.Chembiol.2012.11.008  0.72
2013 Shvartsburg AA, Seim TA, Danielson WF, Norheim R, Moore RJ, Anderson GA, Smith RD. High-definition differential ion mobility spectrometry with resolving power up to 500. Journal of the American Society For Mass Spectrometry. 24: 109-14. PMID 23345059 DOI: 10.1007/S13361-012-0517-5  0.72
2013 Zhang Q, Fillmore TL, Schepmoes AA, Clauss TR, Gritsenko MA, Mueller PW, Rewers M, Atkinson MA, Smith RD, Metz TO. Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes. The Journal of Experimental Medicine. 210: 191-203. PMID 23277452 DOI: 10.1084/Jem.20111843  0.72
2013 Su D, Shukla AK, Chen B, Kim JS, Nakayasu E, Qu Y, Aryal U, Weitz K, Clauss TR, Monroe ME, Camp DG, Bigelow DJ, Smith RD, Kulkarni RN, Qian WJ. Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry. Free Radical Biology & Medicine. 57: 68-78. PMID 23277143 DOI: 10.1016/J.Freeradbiomed.2012.12.010  0.72
2013 Kim JS, Monroe ME, Camp DG, Smith RD, Qian WJ. In-source fragmentation and the sources of partially tryptic peptides in shotgun proteomics. Journal of Proteome Research. 12: 910-6. PMID 23268687 DOI: 10.1021/Pr300955F  0.72
2013 Aryal UK, Callister SJ, Mishra S, Zhang X, Shutthanandan JI, Angel TE, Shukla AK, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Sherman L. Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced Hâ‚‚ production. Applied and Environmental Microbiology. 79: 1070-7. PMID 23204418 DOI: 10.1128/Aem.02864-12  0.72
2013 Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, et al. A multi-omic systems approach to elucidating Yersinia virulence mechanisms. Molecular Biosystems. 9: 44-54. PMID 23147219 DOI: 10.1039/C2Mb25287B  0.72
2013 Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE, Webb-Robertson BJ. A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments. Proteomics. 13: 493-503. PMID 23019139 DOI: 10.1002/Pmic.201200269  0.72
2013 Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, ... ... Smith RD, et al. Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling. Current Topics in Microbiology and Immunology. 363: 21-41. PMID 22886542 DOI: 10.1007/82_2012_247  0.72
2013 Pincus D, Ryan CJ, Smith RD, Brent R, Resnekov O. Correction: Assigning quantitative function to post-translational modifications reveals multiple sites of phosphorylation that tune yeast pheromone signaling output (PLoS ONE) Plos One. 8. DOI: 10.1371/annotation/06dfa4e4-30f5-4d37-8559-0f2a9d11f0de  0.72
2012 Chauvigné-Hines LM, Anderson LN, Weaver HM, Brown JN, Koech PK, Nicora CD, Hofstad BA, Smith RD, Wilkins MJ, Callister SJ, Wright AT. Suite of activity-based probes for cellulose-degrading enzymes. Journal of the American Chemical Society. 134: 20521-32. PMID 23176123 DOI: 10.1021/Ja309790W  0.72
2012 Sadler NC, Angel TE, Lewis MP, Pederson LM, Chauvigné-Hines LM, Wiedner SD, Zink EM, Smith RD, Wright AT. Activity-based protein profiling reveals mitochondrial oxidative enzyme impairment and restoration in diet-induced obese mice. Plos One. 7: e47996. PMID 23110155 DOI: 10.1371/Journal.Pone.0047996  0.72
2012 Tian Z, Tolić N, Zhao R, Moore RJ, Hengel SM, Robinson EW, Stenoien DL, Wu S, Smith RD, Paša-Tolić L. Enhanced top-down characterization of histone post-translational modifications. Genome Biology. 13: R86. PMID 23034525 DOI: 10.1186/Gb-2012-13-10-R86  0.72
2012 Angel TE, Jacobs JM, Smith RP, Pasternack MS, Elias S, Gritsenko MA, Shukla A, Gilmore EC, McCarthy C, Camp DG, Smith RD, Warren HS. Cerebrospinal fluid proteome of patients with acute Lyme disease. Journal of Proteome Research. 11: 4814-22. PMID 22900834 DOI: 10.1021/Pr300577P  0.32
2012 Brown RN, Sanford JA, Park JH, Deatherage BL, Champion BL, Smith RD, Heffron F, Adkins JN. A Comprehensive Subcellular Proteomic Survey of Salmonella Grown under Phagosome-Mimicking versus Standard Laboratory Conditions. International Journal of Proteomics. 2012: 123076. PMID 22900174 DOI: 10.1155/2012/123076  0.32
2012 Lee JH, Hyung SW, Mun DG, Jung HJ, Kim H, Lee H, Kim SJ, Park KS, Moore RJ, Smith RD, Lee SW. Fully automated multifunctional ultrahigh pressure liquid chromatography system for advanced proteome analyses. Journal of Proteome Research. 11: 4373-81. PMID 22709424 DOI: 10.1021/Pr3004166  0.72
2012 Varnum SM, Webb-Robertson BJ, Pounds JG, Moore RJ, Smith RD, Frevert CW, Skerrett SJ, Wunschel D. Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp. novicida. Journal of Proteome Research. 11: 3690-703. PMID 22663564 DOI: 10.1021/Pr3001767  0.72
2012 Brown JN, Ortiz GM, Angel TE, Jacobs JM, Gritsenko M, Chan EY, Purdy DE, Murnane RD, Larsen K, Palermo RE, Shukla AK, Clauss TR, Katze MG, McCune JM, Smith RD. Morphine produces immunosuppressive effects in nonhuman primates at the proteomic and cellular levels. Molecular & Cellular Proteomics : McP. 11: 605-18. PMID 22580588 DOI: 10.1074/Mcp.M111.016121  0.72
2012 Schrimpe-Rutledge AC, Fontès G, Gritsenko MA, Norbeck AD, Anderson DJ, Waters KM, Adkins JN, Smith RD, Poitout V, Metz TO. Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics. Journal of Proteome Research. 11: 3520-32. PMID 22578083 DOI: 10.1021/Pr3002996  0.72
2012 Waters KM, Liu T, Quesenberry RD, Willse AR, Bandyopadhyay S, Kathmann LE, Weber TJ, Smith RD, Wiley HS, Thrall BD. Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data. Plos One. 7: e34515. PMID 22479638 DOI: 10.1371/Journal.Pone.0034515  0.72
2012 Aylward FO, Burnum KE, Scott JJ, Suen G, Tringe SG, Adams SM, Barry KW, Nicora CD, Piehowski PD, Purvine SO, Starrett GJ, Goodwin LA, Smith RD, Lipton MS, Currie CR. Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. The Isme Journal. 6: 1688-701. PMID 22378535 DOI: 10.1038/Ismej.2012.10  0.72
2012 Gao X, Zhang Q, Meng D, Isaac G, Zhao R, Fillmore TL, Chu RK, Zhou J, Tang K, Hu Z, Moore RJ, Smith RD, Katze MG, Metz TO. A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling. Analytical and Bioanalytical Chemistry. 402: 2923-33. PMID 22354571 DOI: 10.1007/S00216-012-5773-5  0.72
2012 Smith RD. Mass spectrometry in biomarker applications: From untargeted discovery to targeted verification, and implications for platform convergence and clinical application Clinical Chemistry. 58: 528-530. PMID 22194635 DOI: 10.1373/Clinchem.2011.180596  0.72
2012 Shen Y, Tolić N, Purvine SO, Smith RD. Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information. Journal of Proteome Research. 11: 668-77. PMID 22054047 DOI: 10.1021/Pr200597J  0.48
2011 Venter E, Smith RD, Payne SH. Proteogenomic analysis of bacteria and archaea: a 46 organism case study. Plos One. 6: e27587. PMID 22114679 DOI: 10.1371/Journal.Pone.0027587  0.72
2011 Tolmachev AV, Robinson EW, Wu S, Smith RD, Paša-Toli L. Trapping radial electric field optimization in compensated FTICR cells. Journal of the American Society For Mass Spectrometry. 22: 1334-42. PMID 21953187 DOI: 10.1007/S13361-011-0167-Z  0.72
2011 Tang K, Page JS, Marginean I, Kelly RT, Smith RD. Improving liquid chromatography-mass spectrometry sensitivity using a subambient pressure ionization with nanoelectrospray (SPIN) interface. Journal of the American Society For Mass Spectrometry. 22: 1318-25. PMID 21953185 DOI: 10.1007/S13361-011-0135-7  0.72
2011 Shvartsburg AA, Isaac G, Leveque N, Smith RD, Metz TO. Separation and classification of lipids using differential ion mobility spectrometry. Journal of the American Society For Mass Spectrometry. 22: 1146-55. PMID 21953096 DOI: 10.1007/S13361-011-0114-Z  0.72
2011 Rasmussen AL, Diamond DL, McDermott JE, Gao X, Metz TO, Matzke MM, Carter VS, Belisle SE, Korth MJ, Waters KM, Smith RD, Katze MG. Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis. Journal of Virology. 85: 11646-54. PMID 21917952 DOI: 10.1128/Jvi.05605-11  0.72
2011 Kim YM, Metz TO, Hu Z, Wiedner SD, Kim JS, Smith RD, Morgan WF, Zhang Q. Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics. Rapid Communications in Mass Spectrometry : Rcm. 25: 2561-4. PMID 21910289 DOI: 10.1002/Rcm.5134  0.72
2011 Shvartsburg AA, Creese AJ, Smith RD, Cooper HJ. Separation of a set of peptide sequence isomers using differential ion mobility spectrometry. Analytical Chemistry. 83: 6918-23. PMID 21863819 DOI: 10.1021/Ac201640D  0.4
2011 Ibrahim YM, Shvartsburg AA, Smith RD, Belov ME. Ultrasensitive identification of localization variants of modified peptides using ion mobility spectrometry. Analytical Chemistry. 83: 5617-23. PMID 21692493 DOI: 10.1021/Ac200719N  0.72
2011 Shen Y, Tolić N, Xie F, Zhao R, Purvine SO, Schepmoes AA, Moore RJ, Anderson GA, Smith RD. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods. Journal of Proteome Research. 10: 3929-43. PMID 21678914 DOI: 10.1021/Pr200052C  0.48
2011 Sun X, Kelly RT, Tang K, Smith RD. Membrane-based emitter for coupling microfluidics with ultrasensitive nanoelectrospray ionization-mass spectrometry. Analytical Chemistry. 83: 5797-803. PMID 21657269 DOI: 10.1021/Ac200960H  0.4
2011 Sun X, Kelly RT, Danielson WF, Agrawal N, Tang K, Smith RD. Hydrodynamic injection with pneumatic valving for microchip electrophoresis with total analyte utilization. Electrophoresis. 32: 1610-8. PMID 21520147 DOI: 10.1002/Elps.201000522  0.44
2011 Belov ME, Prasad S, Prior DC, Danielson WF, Weitz K, Ibrahim YM, Smith RD. Pulsed multiple reaction monitoring approach to enhancing sensitivity of a tandem quadrupole mass spectrometer. Analytical Chemistry. 83: 2162-71. PMID 21344863 DOI: 10.1021/Ac103006B  0.72
2011 Niemann GS, Brown RN, Gustin JK, Stufkens A, Shaikh-Kidwai AS, Li J, McDermott JE, Brewer HM, Schepmoes A, Smith RD, Adkins JN, Heffron F. Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants. Infection and Immunity. 79: 33-43. PMID 20974834 DOI: 10.1128/Iai.00771-10  0.72
2011 Burnum KE, Callister SJ, Nicora CD, Purvine SO, Hugenholtz P, Warnecke F, Scheffrahn RH, Smith RD, Lipton MS. Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. The Isme Journal. 5: 161-4. PMID 20613792 DOI: 10.1038/Ismej.2010.97  0.72
2010 Tian Z, Zhao R, Tolić N, Moore RJ, Stenoien DL, Robinson EW, Smith RD, Paša-Tolić L. Two-dimensional liquid chromatography system for online top-down mass spectrometry. Proteomics. 10: 3610-20. PMID 20879039 DOI: 10.1002/Pmic.201000367  0.72
2010 Shvartsburg AA, Creese AJ, Smith RD, Cooper HJ. Separation of peptide isomers with variant modified sites by high-resolution differential ion mobility spectrometry. Analytical Chemistry. 82: 8327-34. PMID 20843012 DOI: 10.1021/Ac101878A  0.4
2010 Liu M, Hou J, Huang L, Huang X, Heibeck TH, Zhao R, Pasa-Tolic L, Smith RD, Li Y, Fu K, Zhang Z, Hinrichs SH, Ding SJ. Site-specific proteomics approach for study protein S-nitrosylation. Analytical Chemistry. 82: 7160-8. PMID 20687582 DOI: 10.1021/Ac100569D  0.4
2010 Shah AR, Davidson J, Monroe ME, Mayampurath AM, Danielson WF, Shi Y, Robinson AC, Clowers BH, Belov ME, Anderson GA, Smith RD. An efficient data format for mass spectrometry-based proteomics. Journal of the American Society For Mass Spectrometry. 21: 1784-8. PMID 20674389 DOI: 10.1016/J.Jasms.2010.06.014  0.72
2010 Sun X, Kelly RT, Tang K, Smith RD. Ultrasensitive nanoelectrospray ionization-mass spectrometry using poly(dimethylsiloxane) microchips with monolithically integrated emitters. The Analyst. 135: 2296-302. PMID 20617264 DOI: 10.1039/C0An00253D  0.4
2010 Shen Y, Tolić N, Purvine SO, Smith RD. Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach. Journal of Proteome Research. 9: 4053-60. PMID 20590115 DOI: 10.1021/Pr1002559  0.48
2010 Auberry KJ, Kiebel GR, Monroe ME, Adkins JN, Anderson GA, Smith RD. Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information. Journal of Proteomics & Bioinformatics. 3: 1-4. PMID 20585472 DOI: 10.4172/Jpb.1000114  0.72
2010 True LD, Zhang H, Ye M, Huang CY, Nelson PS, von Haller PD, Tjoelker LW, Kim JS, Qian WJ, Smith RD, Ellis WJ, Liebeskind ES, Liu AY. CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 23: 1346-56. PMID 20562849 DOI: 10.1038/Modpathol.2010.122  0.32
2010 Rana GS, York TP, Edmiston JS, Zedler BK, Pounds JG, Adkins JN, Varnum SM, Smith RD, Liu Z, Li G, Webb BT, Murrelle EL, Flora JW. Proteomic biomarkers in plasma that differentiate rapid and slow decline in lung function in adult cigarette smokers with chronic obstructive pulmonary disease (COPD). Analytical and Bioanalytical Chemistry. 397: 1809-19. PMID 20442989 DOI: 10.1007/S00216-010-3742-4  0.72
2010 Tang Z, Wu H, Du D, Wang J, Wang H, Qian WJ, Bigelow DJ, Pounds JG, Smith RD, Lin Y. Sensitive immunoassays of nitrated fibrinogen in human biofluids. Talanta. 81: 1662-9. PMID 20441955 DOI: 10.1016/J.Talanta.2010.03.022  0.32
2010 Lourette N, Smallwood H, Wu S, Robinson EW, Squier TC, Smith RD, Pasa-Tolić L. A top-down LC-FTICR MS-based strategy for characterizing oxidized calmodulin in activated macrophages. Journal of the American Society For Mass Spectrometry. 21: 930-9. PMID 20417115 DOI: 10.1016/J.Jasms.2010.02.027  0.72
2010 Zhang H, Brown RN, Qian WJ, Monroe ME, Purvine SO, Moore RJ, Gritsenko MA, Shi L, Romine MF, Fredrickson JK, Pasa-Tolić L, Smith RD, Lipton MS. Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling. Journal of Proteome Research. 9: 2160-9. PMID 20380418 DOI: 10.1021/Pr9009113  0.72
2010 Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F. Performing comparative peptidomics analyses of Salmonella from different growth conditions. Methods in Molecular Biology (Clifton, N.J.). 615: 13-27. PMID 20013197 DOI: 10.1007/978-1-60761-535-4_2  0.72
2010 Kelly RT, Tolmachev AV, Page JS, Tang K, Smith RD. The ion funnel: theory, implementations, and applications. Mass Spectrometry Reviews. 29: 294-312. PMID 19391099 DOI: 10.1002/Mas.20232  0.52
2009 Tolmachev AV, Robinson EW, Wu S, Paša-Tolić L, Smith RD. FT-ICR MS optimization for the analysis of intact proteins. International Journal of Mass Spectrometry. 281: 32-38. PMID 20473360 DOI: 10.1016/J.Ijms.2008.10.010  0.72
2009 Marginean I, Page JS, Kelly RT, Tang K, Smith RD. Effect of pressure on electrospray characteristics. Applied Physics Letters. 95: 184103. PMID 19997584 DOI: 10.1063/1.3258494  0.72
2009 Shi L, Ansong C, Smallwood H, Rommereim L, McDermott JE, Brewer HM, Norbeck AD, Taylor RC, Gustin JK, Heffron F, Smith RD, Adkins JN. Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg/pH Medium. Journal of Proteomics & Bioinformatics. 2: 388-397. PMID 19953200 DOI: 10.4172/Jpb.1000099  0.72
2009 Alquier T, Peyot ML, Latour MG, Kebede M, Sorensen CM, Gesta S, Ronald Kahn C, Smith RD, Jetton TL, Metz TO, Prentki M, Poitout V. Deletion of GPR40 impairs glucose-induced insulin secretion in vivo in mice without affecting intracellular fuel metabolism in islets. Diabetes. 58: 2607-15. PMID 19720802 DOI: 10.2337/Db09-0362  0.72
2009 Shvartsburg AA, Tang K, Smith RD, Holden M, Rush M, Thompson A, Toutoungi D. Ultrafast differential ion mobility spectrometry at extreme electric fields coupled to mass spectrometry Analytical Chemistry. 81: 8048-8053. PMID 19708673 DOI: 10.1021/Ac901479E  0.72
2009 Kelly RT, Page JS, Marginean I, Tang K, Smith RD. Dilution-free analysis from picoliter droplets by nano-electrospray ionization mass spectrometry. Angewandte Chemie (International Ed. in English). 48: 6832-5. PMID 19688798 DOI: 10.1002/Anie.200902501  0.72
2009 Mabrouki R, Kelly RT, Prior DC, Shvartsburg AA, Tang K, Smith RD. Improving FAIMS sensitivity using a planar geometry with slit interfaces. Journal of the American Society For Mass Spectrometry. 20: 1768-74. PMID 19616967 DOI: 10.1016/J.Jasms.2009.05.019  0.44
2009 Pez-Ferrer DL, Hixson KK, Smallwood H, Squier TC, Petritis K, Smith RD. Evaluation of a high-intensity focused ultrasound-immobilized trypsin digestion and 18O-labeling method for quantitative proteomics Analytical Chemistry. 81: 6272-6277. PMID 19555078 DOI: 10.1021/Ac802540S  0.72
2009 Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN. Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica. Infection and Immunity. 77: 3227-33. PMID 19528222 DOI: 10.1128/Iai.00063-09  0.72
2009 Park CC, Petyuk VA, Qian WJ, Smith RD, Smith DJ. Dual spatial maps of transcript and protein abundance in the mouse brain. Expert Review of Proteomics. 6: 243-9. PMID 19489697 DOI: 10.1586/Epr.09.46  0.72
2009 Tolmachev AV, Clowers BH, Belov ME, Smith RD. Coulombic effects in ion mobility spectrometry. Analytical Chemistry. 81: 4778-87. PMID 19438247 DOI: 10.1021/Ac900329X  0.72
2009 Wu S, Lourette NM, Tolić N, Zhao R, Robinson EW, Tolmachev AV, Smith RD, Pasa-Tolić L. An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications. Journal of Proteome Research. 8: 1347-57. PMID 19206473 DOI: 10.1021/Pr800720D  0.72
2009 Chowdhury SM, Shi L, Yoon H, Ansong C, Rommereim LM, Norbeck AD, Auberry KJ, Moore RJ, Adkins JN, Heffron F, Smith RD. A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis. Journal of Proteome Research. 8: 1504-14. PMID 19206470 DOI: 10.1021/Pr800865D  0.72
2009 Marginean I, Kelly RT, Moore RJ, Prior DC, LaMarche BL, Tang K, Smith RD. Selection of the optimum electrospray voltage for gradient elution LC-MS measurements. Journal of the American Society For Mass Spectrometry. 20: 682-8. PMID 19196520 DOI: 10.1016/J.Jasms.2008.12.004  0.72
2009 Zhang Q, Ames JM, Smith RD, Baynes JW, Metz TO. A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease. Journal of Proteome Research. 8: 754-69. PMID 19093874 DOI: 10.1021/Pr800858H  0.72
2008 Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F. Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella. Future Microbiology. 3: 625-34. PMID 19072180 DOI: 10.2217/17460913.3.6.625  0.72
2008 Zhang Q, Schepmoes AA, Brock JW, Wu S, Moore RJ, Purvine SO, Baynes JW, Smith RD, Metz TO. Improved methods for the enrichment and analysis of glycated peptides. Analytical Chemistry. 80: 9822-9. PMID 18989935 DOI: 10.1021/Ac801704J  0.72
2008 Tolmachev AV, Monroe ME, Purvine SO, Moore RJ, Jaitly N, Adkins JN, Anderson GA, Smith RD. Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments. Analytical Chemistry. 80: 8514-25. PMID 18855412 DOI: 10.1021/Ac801376G  0.72
2008 Shen Y, Tolić N, Hixson KK, Purvine SO, Anderson GA, Smith RD. De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins Analytical Chemistry. 80: 7742-7754. PMID 18783246 DOI: 10.1021/Ac801123P  0.72
2008 Zhang Q, Petyuk VA, Schepmoes AA, Orton DJ, Monroe ME, Yang F, Smith RD, Metz TO. Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 22: 3027-34. PMID 18763275 DOI: 10.1002/Rcm.3703  0.72
2008 Robinson EW, Shvartsburg AA, Tang K, Smith RD. Control of ion distortion in field asymmetric waveform ion mobility spectrometry via variation of dispersion field and gas temperature. Analytical Chemistry. 80: 7508-15. PMID 18729473 DOI: 10.1021/Ac800655D  0.72
2008 López-Ferrer D, Heibeck TH, Petritis K, Hixson KK, Qian W, Monroe ME, Mayampurath A, Moore RJ, Belov ME, Camp DG, Smith RD. Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound. Journal of Proteome Research. 7: 3860-7. PMID 18686986 DOI: 10.1021/Pr800161X  0.72
2008 Marginean I, Kelly RT, Prior DC, LaMarche BL, Tang K, Smith RD. Analytical characterization of the electrospray ion source in the nanoflow regime. Analytical Chemistry. 80: 6573-9. PMID 18661954 DOI: 10.1021/Ac800683S  0.72
2008 Ding YHR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T. Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor Biochimica Et Biophysica Acta - Proteins and Proteomics. 1784: 1935-1941. PMID 18638577 DOI: 10.1016/J.Bbapap.2008.06.011  0.72
2008 Belov ME, Clowers BH, Prior DC, Danielson WF, Liyu AV, Petritis BO, Smith RD. Dynamically multiplexed ion mobility time-of-flight mass spectrometry. Analytical Chemistry. 80: 5873-83. PMID 18582088 DOI: 10.1021/Ac8003665  0.72
2008 Shen Y, Hixson KK, Tolić N, Camp DG, Purvine SO, Moore RJ, Smith RD. Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins Analytical Chemistry. 80: 5819-5828. PMID 18578501 DOI: 10.1021/Ac800077W  0.72
2008 Petyuk VA, Qian WJ, Hinault C, Gritsenko MA, Singhal M, Monroe ME, Camp DG, Kulkarni RN, Smith RD. Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. Journal of Proteome Research. 7: 3114-26. PMID 18570455 DOI: 10.1021/Pr800205B  0.72
2008 Kelly RT, Page JS, Marginean I, Tang K, Smith RD. Nanoelectrospray emitter arrays providing interemitter electric field uniformity. Analytical Chemistry. 80: 5660-5. PMID 18553942 DOI: 10.1021/Ac800508Q  0.72
2008 Ibrahim YM, Belov ME, Liyu AV, Smith RD. Automated gain control ion funnel trap for orthogonal time-of-flight mass spectrometry. Analytical Chemistry. 80: 5367-76. PMID 18512944 DOI: 10.1021/Ac8003488  0.72
2008 Ding J, Sorensen CM, Jaitly N, Jiang H, Orton DJ, Monroe ME, Moore RJ, Smith RD, Metz TO. Application of the accurate mass and time tag approach in studies of the human blood lipidome. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 871: 243-52. PMID 18502191 DOI: 10.1016/J.Jchromb.2008.04.040  0.72
2008 Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. A computational strategy to analyze label-free temporal bottom-up proteomics data. Journal of Proteome Research. 7: 2595-604. PMID 18442284 DOI: 10.1021/Pr0704837  0.72
2008 Kelly RT, Tang K, Irimia D, Toner M, Smith RD. Elastomeric microchip electrospray emitter for stable cone-jet mode operation in the nanoflow regime. Analytical Chemistry. 80: 3824-31. PMID 18419138 DOI: 10.1021/Ac8000786  0.72
2008 Ham BM, Yang F, Jayachandran H, Jaitly N, Monroe ME, Gritsenko MA, Livesay EA, Zhao R, Purvine SO, Orton D, Adkins JN, Camp DG, Rossie S, Smith RD. The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage. Journal of Proteome Research. 7: 2215-21. PMID 18412383 DOI: 10.1021/Pr700575M  0.72
2008 Zhang Q, Tang N, Schepmoes AA, Phillips LS, Smith RD, Metz TO. Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes. Journal of Proteome Research. 7: 2025-32. PMID 18396901 DOI: 10.1021/Pr700763R  0.72
2008 Ansong C, Purvine SO, Adkins JN, Lipton MS, Smith RD. Proteogenomics: needs and roles to be filled by proteomics in genome annotation. Briefings in Functional Genomics & Proteomics. 7: 50-62. PMID 18334489 DOI: 10.1093/Bfgp/Eln010  0.72
2008 Pounds JG, Flora JW, Adkins JN, Lee KM, Rana GS, Sengupta T, Smith RD, McKinney WJ. Characterization of the mouse bronchoalveolar lavage proteome by micro-capillary LC-FTICR mass spectrometry. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 864: 95-101. PMID 18313996 DOI: 10.1016/J.Jchromb.2008.01.044  0.72
2008 Clowers BH, Belov ME, Prior DC, Danielson WF, Ibrahim Y, Smith RD. Pseudorandom sequence modifications for ion mobility orthogonal time-of-flight mass spectrometry. Analytical Chemistry. 80: 2464-73. PMID 18311942 DOI: 10.1021/Ac7022712  0.72
2008 Tolmachev AV, Robinson EW, Wu S, Kang H, Lourette NM, Pasa-Tolić L, Smith RD. Trapped-ion cell with improved DC potential harmonicity for FT-ICR MS. Journal of the American Society For Mass Spectrometry. 19: 586-97. PMID 18296061 DOI: 10.1016/J.Jasms.2008.01.006  0.72
2008 Shen Y, Tolić N, Hixson KK, Purvine SO, Pasa-Tolić L, Qian WJ, Adkins JN, Moore RJ, Smith RD. Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags. Analytical Chemistry. 80: 1871-82. PMID 18271604 DOI: 10.1021/Ac702328X  0.72
2008 Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS. Comparative bacterial proteomics: analysis of the core genome concept. Plos One. 3: e1542. PMID 18253490 DOI: 10.1371/Journal.Pone.0001542  0.72
2008 Page JS, Tang K, Kelly RT, Smith RD. Subambient pressure ionization with nanoelectrospray source and interface for improved sensitivity in mass spectrometry. Analytical Chemistry. 80: 1800-5. PMID 18237189 DOI: 10.1021/Ac702354B  0.4
2008 Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TR, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD. Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions. Journal of Proteome Research. 7: 960-8. PMID 18205298 DOI: 10.1021/Pr070432+  0.72
2008 Clowers BH, Ibrahim YM, Prior DC, Danielson WF, Belov ME, Smith RD. Enhanced ion utilization efficiency using an electrodynamic ion funnel trap as an injection mechanism for ion mobility spectrometry. Analytical Chemistry. 80: 612-23. PMID 18166021 DOI: 10.1021/Ac701648P  0.72
2008 Jacobs JM, Waters KM, Kathmann LE, Camp DG, Wiley HS, Smith RD, Thrall BD. The mammary epithelial cell secretome and its regulation by signal transduction pathways. Journal of Proteome Research. 7: 558-69. PMID 18166007 DOI: 10.1021/Pr0704377  0.72
2008 Ansong C, Yoon H, Norbeck AD, Gustin JK, McDermott JE, Mottaz HM, Rue J, Adkins JN, Heffron F, Smith RD. Proteomics analysis of the causative agent of typhoid fever. Journal of Proteome Research. 7: 546-57. PMID 18166006 DOI: 10.1021/Pr070434U  0.72
2008 Petyuk VA, Jaitly N, Moore RJ, Ding J, Metz TO, Tang K, Monroe ME, Tolmachev AV, Adkins JN, Belov ME, Dabney AR, Qian WJ, Camp DG, Smith RD. Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content. Analytical Chemistry. 80: 693-706. PMID 18163597 DOI: 10.1021/Ac701863D  0.72
2008 Kelly RT, Page JS, Zhao R, Qian WJ, Mottaz HM, Tang K, Smith RD. Capillary-based multi nanoelectrospray emitters: improvements in ion transmission efficiency and implementation with capillary reversed-phase LC-ESI-MS. Analytical Chemistry. 80: 143-9. PMID 18044958 DOI: 10.1021/Ac701647S  0.4
2007 Metz TO, Zhang Q, Page JS, Shen Y, Callister SJ, Jacobs JM, Smith RD. The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery. Biomarkers in Medicine. 1: 159-185. PMID 19177179 DOI: 10.2217/17520363.1.1.159  0.72
2007 Yang F, Jaitly N, Jayachandran H, Luo Q, Monroe ME, Du X, Gritsenko MA, Zhang R, Anderson DJ, Purvine SO, Adkins JN, Moore RJ, Mottaz HM, Ding SJ, Lipton MS, ... ... Smith RD, et al. Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition. Journal of Proteome Research. 6: 4489-97. PMID 17929957 DOI: 10.1021/Pr070068E  0.72
2007 Marginean I, Kelly RT, Page JS, Tang K, Smith RD. Electrospray characteristic curves: in pursuit of improved performance in the nanoflow regime. Analytical Chemistry. 79: 8030-6. PMID 17896826 DOI: 10.1021/Ac0707986  0.72
2007 Liu T, Belov ME, Jaitly N, Qian WJ, Smith RD. Accurate mass measurements in proteomics. Chemical Reviews. 107: 3621-53. PMID 17649984 DOI: 10.1021/Cr068288J  0.52
2007 Ding J, Sorensen CM, Zhang Q, Jiang H, Jaitly N, Livesay EA, Shen Y, Smith RD, Metz TO. Capillary LC coupled with high-mass measurement accuracy mass spectrometry for metabolic profiling. Analytical Chemistry. 79: 6081-93. PMID 17636878 DOI: 10.1021/Ac070080Q  0.72
2007 Page JS, Kelly RT, Tang K, Smith RD. Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface. Journal of the American Society For Mass Spectrometry. 18: 1582-90. PMID 17627841 DOI: 10.1016/J.Jasms.2007.05.018  0.4
2007 Zhang Q, Qian WJ, Knyushko TV, Clauss TR, Purvine SO, Moore RJ, Sacksteder CA, Chin MH, Smith DJ, Camp DG, Bigelow DJ, Smith RD. A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples. Journal of Proteome Research. 6: 2257-68. PMID 17497906 DOI: 10.1021/Pr0606934  0.72
2007 Zhang Q, Tang N, Brock JW, Mottaz HM, Ames JM, Baynes JW, Smith RD, Metz TO. Enrichment and analysis of nonenzymatically glycated peptides: boronate affinity chromatography coupled with electron-transfer dissociation mass spectrometry. Journal of Proteome Research. 6: 2323-30. PMID 17488106 DOI: 10.1021/Pr070112Q  0.72
2007 Liu T, Qian WJ, Camp DG, Smith RD. The use of a quantitative cysteinyl-peptide enrichment technology for high-throughput quantitative proteomics Methods in Molecular Biology. 359: 107-124. PMID 17484113 DOI: 10.1007/978-1-59745-255-7_7  0.72
2007 Kelly RT, Page JS, Tang K, Smith RD. Array of chemically etched fused-silica emitters for improving the sensitivity and quantitation of electrospray ionization mass spectrometry. Analytical Chemistry. 79: 4192-8. PMID 17472340 DOI: 10.1021/Ac062417E  0.4
2007 Shvartsburg AA, Li F, Tang K, Smith RD. Distortion of ion structures by field asymmetric waveform ion mobility spectrometry. Analytical Chemistry. 79: 1523-8. PMID 17297950 DOI: 10.1021/Ac061306C  0.4
2007 Ding SJ, Qian WJ, Smith RD. Quantitative proteomic approaches for studying phosphotyrosine signaling. Expert Review of Proteomics. 4: 13-23. PMID 17288512 DOI: 10.1586/14789450.4.1.13  0.32
2007 Zhang Q, Frolov A, Tang N, Hoffmann R, van de Goor T, Metz TO, Smith RD. Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides. Rapid Communications in Mass Spectrometry : Rcm. 21: 661-6. PMID 17279487 DOI: 10.1002/Rcm.2884  0.72
2007 Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, ... ... Smith RD, et al. Head-to-head comparison of serum fractionation techniques. Journal of Proteome Research. 6: 828-36. PMID 17269739 DOI: 10.1021/Pr0604920  0.72
2007 Sharma S, Simpson DC, Tolić N, Jaitly N, Mayampurath AM, Smith RD, Pasa-Tolić L. Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry. Journal of Proteome Research. 6: 602-10. PMID 17269717 DOI: 10.1021/Pr060354A  0.72
2007 Petyuk VA, Qian WJ, Chin MH, Wang H, Livesay EA, Monroe ME, Adkins JN, Jaitly N, Anderson DJ, Camp DG, Smith DJ, Smith RD. Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry. Genome Research. 17: 328-36. PMID 17255552 DOI: 10.1101/Gr.5799207  0.72
2007 Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JS, Metz TO, Adkins JN, Smith RD, Heffron F. Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics. Molecular & Cellular Proteomics : McP. 6: 717-27. PMID 17228056 DOI: 10.1074/Mcp.M600282-Mcp200  0.72
2007 Luo Q, Page JS, Tang K, Smith RD. MicroSPE-nanoLC-ESI-MS/MS using 10-microm-i.d. silica-based monolithic columns for proteomics. Analytical Chemistry. 79: 540-5. PMID 17222018 DOI: 10.1021/Ac061603H  0.4
2006 Tolmachev AV, Monroe ME, Jaitly N, Petyuk VA, Adkins JN, Smith RD. Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration. Analytical Chemistry. 78: 8374-85. PMID 17165830 DOI: 10.1021/Ac0606251  0.72
2006 Metz TO, Jacobs JM, Gritsenko MA, Fontès G, Qian WJ, Camp DG, Poitout V, Smith RD. Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS. Journal of Proteome Research. 5: 3345-54. PMID 17137336 DOI: 10.1021/Pr060322N  0.72
2006 Kelly RT, Page JS, Luo Q, Moore RJ, Orton DJ, Tang K, Smith RD. Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry. Analytical Chemistry. 78: 7796-801. PMID 17105173 DOI: 10.1021/Ac061133R  0.48
2006 Hixson KK, Adkins JN, Baker SE, Moore RJ, Chromy BA, Smith RD, McCutchen-Maloney SL, Lipton MS. Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics. Journal of Proteome Research. 5: 3008-17. PMID 17081052 DOI: 10.1021/Pr060179Y  0.72
2006 Jaitly N, Monroe ME, Petyuk VA, Clauss TR, Adkins JN, Smith RD. Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline. Analytical Chemistry. 78: 7397-409. PMID 17073405 DOI: 10.1021/Ac052197P  0.72
2006 Zhang W, Culley DE, Gritsenko MA, Moore RJ, Nie L, Scholten JC, Petritis K, Strittmatter EF, Camp DG, Smith RD, Brockman FJ. LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris. Biochemical and Biophysical Research Communications. 349: 1412-9. PMID 16982031 DOI: 10.1016/J.Bbrc.2006.09.019  0.72
2006 Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, et al. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology. 24: 1151-61. PMID 16964229 DOI: 10.1038/Nbt1239  0.32
2006 Lipton MS, Romine MF, Monroe ME, Elias DA, Pasa-Tolic L, Anderson GA, Anderson DJ, Fredrickson J, Hixson KK, Masselon C, Mottaz H, Tolic N, Smith RD. AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis. Methods of Biochemical Analysis. 49: 113-34. PMID 16929677 DOI: 10.1002/0471973165.Ch9  0.72
2006 Smith RD. Future directions for electrospray ionization for biological analysis using mass spectrometry Biotechniques. 41: 147-148. PMID 16925015 DOI: 10.2144/000112217  0.72
2006 Norbeck AD, Callister SJ, Monroe ME, Jaitly N, Elias DA, Lipton MS, Smith RD. Proteomic approaches to bacterial differentiation. Journal of Microbiological Methods. 67: 473-86. PMID 16919344 DOI: 10.1016/J.Mimet.2006.04.024  0.72
2006 Callister SJ, Dominguez MA, Nicora CD, Zeng X, Tavano CL, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures. Journal of Proteome Research. 5: 1940-7. PMID 16889416 DOI: 10.1021/Pr060050O  0.72
2006 Qian WJ, Jacobs JM, Liu T, Camp DG, Smith RD. Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications. Molecular & Cellular Proteomics : McP. 5: 1727-44. PMID 16887931 DOI: 10.1074/Mcp.M600162-Mcp200  0.72
2006 Petritis K, Kangas LJ, Yan B, Monroe ME, Strittmatter EF, Qian WJ, Adkins JN, Moore RJ, Xu Y, Lipton MS, Camp DG, Smith RD. Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information. Analytical Chemistry. 78: 5026-39. PMID 16841926 DOI: 10.1021/Ac060143P  0.72
2006 Callister SJ, Nicora CD, Zeng X, Roh JH, Dominguez MA, Tavano CL, Monroe ME, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes. Journal of Microbiological Methods. 67: 424-36. PMID 16828186 DOI: 10.1016/J.Mimet.2006.04.021  0.72
2006 Zhang W, Gritsenko MA, Moore RJ, Culley DE, Nie L, Petritis K, Strittmatter EF, Camp DG, Smith RD, Brockman FJ. A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry. Proteomics. 6: 4286-99. PMID 16819729 DOI: 10.1002/Pmic.200500930  0.72
2006 Sacksteder CA, Qian WJ, Knyushko TV, Wang H, Chin MH, Lacan G, Melega WP, Camp DG, Smith RD, Smith DJ, Squier TC, Bigelow DJ. Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease. Biochemistry. 45: 8009-22. PMID 16800626 DOI: 10.1021/Bi060474W  0.72
2006 Simpson DC, Ahn S, Pasa-Tolic L, Bogdanov B, Mottaz HM, Vilkov AN, Anderson GA, Lipton MS, Smith RD. Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling. Electrophoresis. 27: 2722-33. PMID 16732621 DOI: 10.1002/Elps.200600037  0.44
2006 Shvartsburg AA, Li F, Tang K, Smith RD. Characterizing the structures and folding of free proteins using 2-D gas-phase separations: observation of multiple unfolded conformers. Analytical Chemistry. 78: 3304-15. PMID 16689531 DOI: 10.1021/Ac060283Z  0.4
2006 Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, Clauss TR, Purvine SO, Rodland KD, Heffron F, Smith RD. Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Molecular & Cellular Proteomics : McP. 5: 1450-61. PMID 16684765 DOI: 10.1074/Mcp.M600139-Mcp200  0.72
2006 Yang F, Stenoien DL, Strittmatter EF, Wang J, Ding L, Lipton MS, Monroe ME, Nicora CD, Gristenko MA, Tang K, Fang R, Adkins JN, Camp DG, Chen DJ, Smith RD. Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation. Journal of Proteome Research. 5: 1252-60. PMID 16674116 DOI: 10.1021/Pr060028V  0.72
2006 Luo Q, Tang K, Yang F, Elias A, Shen Y, Moore RJ, Zhao R, Hixson KK, Rossie SS, Smith RD. More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry. Journal of Proteome Research. 5: 1091-7. PMID 16674098 DOI: 10.1021/Pr050424Y  0.72
2006 Patwardhan AJ, Strittmatter EF, Camp DG, Smith RD, Pallavicini MG. Quantitative proteome analysis of breast cancer cell lines using 18O-labeling and an accurate mass and time tag strategy. Proteomics. 6: 2903-15. PMID 16596714 DOI: 10.1002/Pmic.200500582  0.72
2006 Page JS, Tolmachev AV, Tang K, Smith RD. Theoretical and experimental evaluation of the low m/z transmission of an electrodynamic ion funnel. Journal of the American Society For Mass Spectrometry. 17: 586-92. PMID 16503158 DOI: 10.1016/J.Jasms.2005.12.013  0.52
2006 Kiebel GR, Auberry KJ, Jaitly N, Clark DA, Monroe ME, Peterson ES, Toli? N, Anderson GA, Smith RD. PRISM: a data management system for high-throughput proteomics. Proteomics. 6: 1783-90. PMID 16470653 DOI: 10.1002/Pmic.200500500  0.72
2006 Wang H, Qian WJ, Chin MH, Petyuk VA, Barry RC, Liu T, Gritsenko MA, Mottaz HM, Moore RJ, Camp Ii DG, Khan AH, Smith DJ, Smith RD. Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. Journal of Proteome Research. 5: 361-9. PMID 16457602 DOI: 10.1021/Pr0503681  0.72
2006 Callister SJ, Barry RC, Adkins JN, Johnson ET, Qian WJ, Webb-Robertson BJ, Smith RD, Lipton MS. Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics. Journal of Proteome Research. 5: 277-86. PMID 16457593 DOI: 10.1021/Pr050300L  0.72
2006 Zimmer JS, Monroe ME, Qian WJ, Smith RD. Advances in proteomics data analysis and display using an accurate mass and time tag approach. Mass Spectrometry Reviews. 25: 450-82. PMID 16429408 DOI: 10.1002/Mas.20071  0.72
2006 Elias DA, Monroe ME, Smith RD, Fredrickson JK, Lipton MS. Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1. Journal of Microbiological Methods. 66: 223-33. PMID 16417935 DOI: 10.1016/J.Mimet.2005.11.009  0.72
2006 Fang R, Elias DA, Monroe ME, Shen Y, McIntosh M, Wang P, Goddard CD, Callister SJ, Moore RJ, Gorby YA, Adkins JN, Fredrickson JK, Lipton MS, Smith RD. Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach. Molecular & Cellular Proteomics : McP. 5: 714-25. PMID 16401633 DOI: 10.1074/Mcp.M500301-Mcp200  0.72
2005 Wang H, Qian WJ, Mottaz HM, Clauss TR, Anderson DJ, Moore RJ, Camp DG, Khan AH, Sforza DM, Pallavicini M, Smith DJ, Smith RD. Development and evaluation of a micro- and nanoscale proteomic sample preparation method. Journal of Proteome Research. 4: 2397-403. PMID 16335993 DOI: 10.1021/Pr050160F  0.72
2005 Patwardhan AJ, Strittmatter EF, Camp DG, Smith RD, Pallavicini MG. Comparison of normal and breast cancer cell lines using proteome, genome, and interactome data. Journal of Proteome Research. 4: 1952-60. PMID 16335939 DOI: 10.1021/Pr0501315  0.72
2005 Shen Y, Strittmatter EF, Zhang R, Metz TO, Moore RJ, Li F, Udseth HR, Smith RD, Unger KK, Kumar D, Lubda D. Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements. Analytical Chemistry. 77: 7763-73. PMID 16316187 DOI: 10.1021/Ac051257O  0.72
2005 Shen Y, Smith RD, Unger KK, Kumar D, Lubda D. Ultrahigh-throughput proteomics using fast RPLC separations with ESI-MS/MS Analytical Chemistry. 77: 6692-6701. PMID 16223258 DOI: 10.1021/Ac050876U  0.72
2005 Tang K, Li F, Shvartsburg AA, Strittmatter EF, Smith RD. Two-dimensional gas-phase separations coupled to mass spectrometry for analysis of complex mixtures. Analytical Chemistry. 77: 6381-8. PMID 16194103 DOI: 10.1021/Ac050871X  0.72
2005 Shen Y, Kim J, Strittmatter EF, Jacobs JM, Camp DG, Fang R, Tolié N, Moore RJ, Smith RD. Characterization of the human blood plasma proteome. Proteomics. 5: 4034-45. PMID 16152657 DOI: 10.1002/Pmic.200401246  0.72
2005 Page JS, Tolmachev AV, Tang K, Smith RD. Variable low-mass filtering using an electrodynamic ion funnel. Journal of Mass Spectrometry : Jms. 40: 1215-22. PMID 16127660 DOI: 10.1002/Jms.900  0.52
2005 Luo Q, Shen Y, Hixson KK, Zhao R, Yang F, Moore RJ, Mottaz HM, Smith RD. Preparation of 20-μm-i.d. silica-based monolithic columns and their performance for proteomics analyses Analytical Chemistry. 77: 5028-5035. PMID 16053318 DOI: 10.1021/Ac050454K  0.72
2005 Adkins JN, Monroe ME, Auberry KJ, Shen Y, Jacobs JM, Camp DG, Vitzthum F, Rodland KD, Zangar RC, Smith RD, Pounds JG. A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy. Proteomics. 5: 3454-66. PMID 16052625 DOI: 10.1002/Pmic.200401333  0.72
2005 Elias DA, Monroe ME, Marshall MJ, Romine MF, Belieav AS, Fredrickson JK, Anderson GA, Smith RD, Lipton MS. Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics. Proteomics. 5: 3120-30. PMID 16038018 DOI: 10.1002/Pmic.200401140  0.72
2005 Yang F, Bogdanov B, Strittmatter EF, Vilkov AN, Gritsenko M, Shi L, Elias DA, Ni S, Romine M, Pasa-Tolić L, Lipton MS, Smith RD. Characterization of purified c-type heme-containing peptides and identification of c-type heme-attachment sites in Shewanella oneidenis cytochromes using mass spectrometry. Journal of Proteome Research. 4: 846-54. PMID 15952731 DOI: 10.1021/Pr0497475  0.72
2005 Tang K, Shvartsburg AA, Lee HN, Prior DC, Buschbach MA, Li F, Tolmachev AV, Anderson GA, Smith RD. High-sensitivity ion mobility spectrometry/mass spectrometry using electrodynamic ion funnel interfaces. Analytical Chemistry. 77: 3330-9. PMID 15889926 DOI: 10.1021/Ac048315A  0.52
2005 Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD. Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics. Analytical Chemistry. 77: 3090-100. PMID 15889897 DOI: 10.1021/Ac0483062  0.72
2005 Jacobs JM, Yang X, Luft BJ, Dunn JJ, Camp DG, Smith RD. Proteomic analysis of Lyme disease: global protein comparison of three strains of Borrelia burgdorferi. Proteomics. 5: 1446-53. PMID 15800874 DOI: 10.1002/Pmic.200401052  0.72
2005 Liu T, Qian WJ, Chen WN, Jacobs JM, Moore RJ, Anderson DJ, Gritsenko MA, Monroe ME, Thrall BD, Camp DG, Smith RD. Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome. Proteomics. 5: 1263-73. PMID 15742320 DOI: 10.1002/Pmic.200401055  0.72
2005 Qian WJ, Liu T, Monroe ME, Strittmatter EF, Jacobs JM, Kangas LJ, Petritis K, Camp DG, Smith RD. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. Journal of Proteome Research. 4: 53-62. PMID 15707357 DOI: 10.1021/Pr0498638  0.72
2005 Masseion C, Paša-Tolić L, Tolić N, Andersen GA, Bogdanov B, Vilkov AN, Shen Y, Zhao R, Qian WJ, Lipton MS, Camp DG, Smith RD. Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry Analytical Chemistry. 77: 400-406. PMID 15649034 DOI: 10.1021/Ac049043E  0.72
2005 Qian WJ, Jacobs JM, Camp DG, Monroe ME, Moore RJ, Gritsenko MA, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Smith RD. Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry. Proteomics. 5: 572-84. PMID 15627965 DOI: 10.1002/Pmic.200400942  0.72
2005 Zhang H, Yi EC, Li XJ, Mallick P, Kelly-Spratt KS, Masselon CD, Camp DG, Smith RD, Kemp CJ, Aebersold R. High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 144-55. PMID 15608340 DOI: 10.1074/Mcp.M400090-Mcp200  0.72
2005 Jacobs JM, Monroe ME, Qian WJ, Shen Y, Anderson GA, Smith RD. Ultra-sensitive, high throughput and quantitative proteomics measurements International Journal of Mass Spectrometry. 240: 195-212. DOI: 10.1016/J.Ijms.2004.09.024  0.72
2004 Qian WJ, Camp DG, Smith RD. High-throughput proteomics using Fourier transform ion cyclotron resonance mass spectrometry Expert Review of Proteomics. 1: 87-95. PMID 15966802 DOI: 10.1586/14789450.1.1.87  0.72
2004 Romine MF, Elias DA, Monroe ME, Auberry K, Fang R, Fredrickson JK, Anderson GA, Smith RD, Lipton MS. Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis. Omics : a Journal of Integrative Biology. 8: 239-54. PMID 15669716 DOI: 10.1089/Omi.2004.8.239  0.72
2004 Pasa-Tolić L, Masselon C, Barry RC, Shen Y, Smith RD. Proteomic analyses using an accurate mass and time tag strategy. Biotechniques. 37: 621-4, 626-33, 636 p. PMID 15517975 DOI: 10.2144/04374Rv01  0.72
2004 Zangar RC, Varnum SM, Covington CY, Smith RD. A rational approach for discovering and validating cancer markers in very small samples using mass spectrometry and ELISA microarrays. Disease Markers. 20: 135-48. PMID 15502246 DOI: 10.1155/2004/754640  0.72
2004 Tang K, Page JS, Smith RD. Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 15: 1416-23. PMID 15465354 DOI: 10.1016/J.Jasms.2004.04.034  0.4
2004 Liu T, Qian WJ, Strittmatter EF, Camp DG, Anderson GA, Thrall BD, Smith RD. High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology. Analytical Chemistry. 76: 5345-53. PMID 15362891 DOI: 10.1021/Ac049485Q  0.72
2004 Strittmatter EF, Kangas LJ, Petritis K, Mottaz HM, Anderson GA, Shen Y, Jacobs JM, Camp DG, Smith RD. Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry. Journal of Proteome Research. 3: 760-9. PMID 15359729 DOI: 10.1021/Pr049965Y  0.72
2004 Blonder J, Goshe MB, Xiao W, Camp DG, Wingerd M, Davis RW, Smith RD. Global analysis of the membrane subproteome of Pseudomonas aeruginosa using liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 3: 434-44. PMID 15253424 DOI: 10.1021/Pr034074W  0.72
2004 Prokisch H, Scharfe C, Camp DG, Xiao W, David L, Andreoli C, Monroe ME, Moore RJ, Gritsenko MA, Kozany C, Hixson KK, Mottaz HM, Zischka H, Ueffing M, Herman ZS, ... ... Smith RD, et al. Integrative analysis of the mitochondrial proteome in yeast. Plos Biology. 2: e160. PMID 15208715 DOI: 10.1371/Journal.Pbio.0020160  0.72
2004 Page JS, Masselon CD, Smith RD. FTICR mass spectrometry for qualitative and quantitative bioanalyses. Current Opinion in Biotechnology. 15: 3-11. PMID 15102459 DOI: 10.1016/J.Copbio.2004.01.002  0.32
2004 Jacobs JM, Mottaz HM, Yu LR, Anderson DJ, Moore RJ, Chen WN, Auberry KJ, Strittmatter EF, Monroe ME, Thrall BD, Camp DG, Smith RD. Multidimensional proteome analysis of human mammary epithelial cells. Journal of Proteome Research. 3: 68-75. PMID 14998165 DOI: 10.1021/Pr034062A  0.72
2004 Kim J, Camp DG, Smith RD. Improved detection of multi-phosphorylated peptides in the presence of phosphoric acid in liquid chromatography/mass spectrometry. Journal of Mass Spectrometry : Jms. 39: 208-15. PMID 14991691 DOI: 10.1002/Jms.593  0.72
2004 Shen Y, Jacobs JM, Camp DG, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG. Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome. Analytical Chemistry. 76: 1134-44. PMID 14961748 DOI: 10.1021/Ac034869M  0.72
2004 Belov ME, Anderson GA, Wingerd MA, Udseth HR, Tang K, Prior DC, Swanson KR, Buschbach MA, Strittmatter EF, Moore RJ, Smith RD. An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics. Journal of the American Society For Mass Spectrometry. 15: 212-32. PMID 14766289 DOI: 10.1016/J.Jasms.2003.09.008  0.72
2004 Shen Y, Tolić N, Masselon C, Paša-Tolić L, Camp DG, Hixson KK, Zhao R, Anderson GA, Smith RD. Ultrasensitive Proteomics Using High-Efficiency On-Line Micro-SPE-NanoLC-NanoESI MS and MS/MS Analytical Chemistry. 76: 144-154. PMID 14697044 DOI: 10.1021/Ac030096Q  0.72
2004 Shen Y, Tolić N, Masselon C, Paša-Tolić L, Camp DG, Lipton MS, Anderson GA, Smith RD. Nanoscale proteomics Analytical and Bioanalytical Chemistry. 378: 1037-1045. PMID 14647945 DOI: 10.1007/s00216-003-2329-8  0.72
2004 Camp DG, Smith RD. The Use of Accurate Mass and Time Tags Based Upon High-Throughput Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Global Proteomic Characterization Proteome Analysis: Interpreting the Genome. 183-224. DOI: 10.1016/B978-044451024-2/50025-4  0.72
2003 Qian WJ, Goshe MB, Camp DG, Yu LR, Tang K, Smith RD. Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures. Analytical Chemistry. 75: 5441-50. PMID 14714534 DOI: 10.1021/Ac0342774  0.72
2003 Chen WN, Yu LR, Strittmatter EF, Thrall BD, Camp DG, Smith RD. Detection of in situ labeled cell surface proteins by mass spectrometry: application to the membrane subproteome of human mammary epithelial cells. Proteomics. 3: 1647-51. PMID 12923789 DOI: 10.1002/Pmic.200300468  0.72
2003 Masselon C, Pasa-Tolić L, Lee SW, Li L, Anderson GA, Harkewicz R, Smith RD. Identification of tryptic peptides from large databases using multiplexed tandem mass spectrometry: simulations and experimental results. Proteomics. 3: 1279-86. PMID 12872228 DOI: 10.1002/Pmic.200300448  0.44
2003 Goshe MB, Blonder J, Smith RD. Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis. Journal of Proteome Research. 2: 153-61. PMID 12716129 DOI: 10.1021/Pr0255607  0.72
2003 Belov ME, Rakov VS, Nikolaev EN, Goshe MB, Anderson GA, Smith RD. Initial implementation of external accumulation liquid chromatography/electrospray ionization Fourier transform ion cyclotron resonance with automated gain control. Rapid Communications in Mass Spectrometry : Rcm. 17: 627-36. PMID 12661014 DOI: 10.1002/Rcm.955  0.72
2003 Petritis K, Kangas LJ, Ferguson PL, Anderson GA, Pasa-Toli? L, Lipton MS, Auberry KJ, Strittmatter EF, Shen Y, Zhao R, Smith RD. Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses. Analytical Chemistry. 75: 1039-48. PMID 12641221 DOI: 10.1021/Ac0205154  0.72
2003 Strittmatter EF, Rodriguez N, Smith RD. High mass measurement accuracy determination for proteomics using multivariate regression fitting: application to electrospray ionization time-of-flight mass spectrometry. Analytical Chemistry. 75: 460-8. PMID 12585471 DOI: 10.1021/Ac026057G  0.72
2003 Goshe MB, Smith RD. Stable isotope-coded proteomic mass spectrometry. Current Opinion in Biotechnology. 14: 101-9. PMID 12566009 DOI: 10.1016/S0958-1669(02)00014-9  0.72
2003 Shen Y, Moore RJ, Zhao R, Blonder J, Auberry DL, Masselon C, Paša-Tolić L, Hixson KK, Auberry KJ, Smith RD. High-efficiency on-line solid-phase extraction coupling to 15-150-μm-i.d. Column liquid chromatography for proteomic analysis Analytical Chemistry. 75: 3596-3605. DOI: 10.1021/ac0300690  0.72
2003 Belov ME, Zhang R, Strittmatter EF, Prior DC, Tang K, Smith RD. Automated gain control and internal calibration with external ion accumulation capillary liquid chromatography-electrospray ionization-fourier transform ion cyclotron resonance Analytical Chemistry. 75: 4195-4205. DOI: 10.1021/ac0206770  0.72
2002 Blonder J, Goshe MB, Moore RJ, Pasa-Tolic L, Masselon CD, Lipton MS, Smith RD. Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 1: 351-60. PMID 12645891 DOI: 10.1021/Pr0255248  0.72
2002 Smith RD. Trends in mass spectrometry instrumentation for proteomics Trends in Biotechnology. 20. PMID 12570152 DOI: 10.1016/S1471-1931(02)00197-0  0.72
2002 Adkins JN, Varnum SM, Auberry KJ, Moore RJ, Angell NH, Smith RD, Springer DL, Pounds JG. Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry Molecular &Amp; Cellular Proteomics : McP. 1: 947-955. PMID 12543931 DOI: 10.1074/Mcp.M200066-Mcp200  0.72
2002 Tang K, Tolmachev AV, Nikolaev E, Zhang R, Belov ME, Udseth HR, Smith RD. Independent control of ion transmission in a jet disrupter dual-channel ion funnel electrospray ionization MS interface. Analytical Chemistry. 74: 5431-7. PMID 12403604 DOI: 10.1021/Ac0202583  0.52
2002 Hixson KK, Rodriguez N, Camp DG, Strittmatter EF, Lipton MS, Smith RD. Evaluation of enzymatic digestion and liquid chromatography-mass spectrometry peptide mapping of the integral membrane protein bacteriorhodopsin. Electrophoresis. 23: 3224-32. PMID 12298094 DOI: 10.1002/1522-2683(200209)23:18<3224::Aid-Elps3224>3.0.Co;2-#  0.72
2002 Yu LR, Johnson MD, Conrads TP, Smith RD, Morrison RS, Veenstra TD. Proteome analysis of camptothecin-treated cortical neurons using isotope-coded affinity tags Electrophoresis. 23: 1591-1598. PMID 12179976 DOI: 10.1002/1522-2683(200206)23:11<1591::Aid-Elps1591>3.0.Co;2-#  0.72
2002 Borisov OV, Goshe MB, Conrads TP, Rakov VS, Veenstra TD, Smith RD. Low-energy collision-induced dissociation fragmentation analysis of cysteinyl-modified peptides. Analytical Chemistry. 74: 2284-92. PMID 12038753 DOI: 10.1021/Ac010974P  0.72
2002 Smith RD, Anderson GA, Lipton MS, Pasa-Tolic L, Shen Y, Conrads TP, Veenstra TD, Udseth HR. An accurate mass tag strategy for quantitative and high-throughput proteome measurements Proteomics. 2: 513-523. PMID 11987125 DOI: 10.1002/1615-9861(200205)2:5<513::Aid-Prot513>3.0.Co;2-W  0.72
2002 Luo H, Lipton MS, Smith RD. Charge effects for differentiation of oligodeoxynucleotide isomers containing 8-oxo-dG residues. Journal of the American Society For Mass Spectrometry. 13: 195-9. PMID 11908798 DOI: 10.1016/S1044-0305(01)00353-1  0.36
2002 Goshe MB, Veenstra TD, Panisko EA, Conrads TP, Angell NH, Smith RD. Phosphoprotein isotope-coded affinity tags: application to the enrichment and identification of low-abundance phosphoproteins. Analytical Chemistry. 74: 607-16. PMID 11838682 DOI: 10.1021/Ac015528G  0.72
2002 Smith RD. Advanced mass spectrometric methods for the rapid and quantitative characterization of proteomes Comparative and Functional Genomics. 3: 143-150. DOI: 10.1002/Cfg.159  0.72
2001 Li L, Masselon CD, Anderson GA, Pasǎa-Tolić L, Lee SW, Shen Y, Zhao R, Lipton MS, Conrads TP, Tolić N, Smith RD. High-throughput peptide identification from protein digests using data-dependent multiplexed tandem FTICR mass spectrometry coupled with capillary liquid chromatography Analytical Chemistry. 73: 3312-3322. PMID 11476231 DOI: 10.1021/Ac010192W  0.72
2001 Belov ME, Nikolaev EN, Alving K, Smith RD. A new technique for unbiased external ion accumulation in a quadrupole two-dimensional ion trap for electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 15: 1172-80. PMID 11445899 DOI: 10.1002/Rcm.356  0.52
2001 Goshe MB, Conrads TP, Panisko EA, Angell NH, Veenstra TD, Smith RD. Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses Analytical Chemistry. 73: 2578-2586. PMID 11403303 DOI: 10.1021/Ac010081X  0.72
2001 Conrads TP, Alving K, Veenstra TD, Belov ME, Anderson GA, Anderson DJ, Lipton MS, Paša-Tolić L, Udseth HR, Chrisler WB, Thrall BD, Smith RD. Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling Analytical Chemistry. 73: 2132-2139. PMID 11354501 DOI: 10.1021/Ac001487X  0.72
2001 Shen Y, Zhao R, Belov ME, Conrads TP, Anderson GA, Tang K, Paša-Tolić L, Veenstra TD, Lipton MS, Udseth HR, Smith RD. Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization fourier transform ion cyclotron resonance mass spectrometry for proteomics Analytical Chemistry. 73: 1766-1775. PMID 11338590 DOI: 10.1021/Ac0011336  0.72
2001 Belov ME, Nikolaev EN, Anderson GA, Udseth HR, Conrads TP, Veenstra TD, Masselon CD, Gorshkov MV, Smith RD. Design and performance of an ESI interface for selective external ion accumulation coupled to a Fourier transform ion cyclotron mass spectrometer. Analytical Chemistry. 73: 253-61. PMID 11199974 DOI: 10.1021/Ac000633W  0.72
2001 Belov ME, Nikolaev EN, Anderson GA, Auberry KJ, Harkewicz R, Smith RD. Electrospray ionization-Fourier transform ion cyclotron mass spectrometry using ion preselection and external accumulation for ultrahigh sensitivity. Journal of the American Society For Mass Spectrometry. 12: 38-48. PMID 11142359 DOI: 10.1016/S1044-0305(00)00198-7  0.52
2000 Martinović S, Paša-Tolić L, Masselon C, Jensen PK, Stone CL, Smith RD. Characterization of human alcohol dehydrogenase isoenzymes by capillary isoelectric focusing-mass spectrometry Electrophoresis. 21: 2368-2375. PMID 10939447 DOI: 10.1002/1522-2683(20000701)21:12<2368::Aid-Elps2368>3.0.Co;2-F  0.72
2000 Conrads TP, Anderson GA, Veenstra TD, Paša-Tolić L, Smith RD. Utility of accurate mass tags for proteome-wide protein identification Analytical Chemistry. 72: 3349-3354. PMID 10939410 DOI: 10.1021/Ac0002386  0.72
2000 Goodlett DR, Bruce JE, Anderson GA, Rist B, Pasa-Tolic L, Fiehn O, Smith RD, Aebersold R. Protein identification with a single accurate mass of a cysteine- containing peptide and constrained database searching Analytical Chemistry. 72: 1112-1118. PMID 10740847 DOI: 10.1021/Ac9913210  0.72
2000 Maier CS, Yan X, Harder ME, Schimerlik MI, Deinzer ML, Pasa-Tolić L, Smith RD. Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometric analysis of the recombinant human macrophage colony stimulating factor beta and derivatives. Journal of the American Society For Mass Spectrometry. 11: 237-43. PMID 10697819 DOI: 10.1016/S1044-0305(99)00139-7  0.72
2000 Smith RD. Evolution of ESI-mass spectrometry and Fourier transform ion cyclotron resonance for proteomics and other biological applications International Journal of Mass Spectrometry. 200: 509-544. DOI: 10.1016/S1387-3806(00)00352-3  0.72
1999 Shen Y, Xiang F, Veenstra TD, Fung EN, Smith RD. High-resolution capillary isoelectric focusing of complex protein mixtures from lysates of microorganisms. Analytical Chemistry. 71: 5348-53. PMID 10596214 DOI: 10.1021/Ac9909305  0.48
1999 Shaffer SA, Tolmachev A, Prior DC, Anderson GA, Udseth HR, Smith RD. Characterization of an improved electrodynamic ion funnel interface for electrospray ionization mass spectrometry Analytical Chemistry. 71: 2957-2964. PMID 10450147 DOI: 10.1021/Ac990346W  0.72
1999 Jensen PK, Pasa-Tolić L, Anderson GA, Horner JA, Lipton MS, Bruce JE, Smith RD. Probing proteomes using capillary isoelectric focusing-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 71: 2076-84. PMID 10366890 DOI: 10.1021/Ac990196P  0.44
1998 Gorshkov MV, Pása Tolić L, Udseth HR, Anderson GA, Huang BM, Bruce JE, Prior DC, Hofstadler SA, Tang L, Chen LZ, Willett JA, Rockwood AL, Sherman MS, Smith RD. Electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry at 11.5 tesla: instrument design and initial results. Journal of the American Society For Mass Spectrometry. 9: 692-700. PMID 9879379 DOI: 10.1016/S1044-0305(98)00037-3  0.44
1998 Pasa Tolić L, Harms AC, Anderson GA, Smith RD, Willie A, Jorns MS. Electrospray ionization-mass spectrometry characterization of heterotetrameric sarcosine oxidase. Journal of the American Society For Mass Spectrometry. 9: 510-5. PMID 9879365 DOI: 10.1016/S1044-0305(98)00011-7  0.72
1998 Shaffer SA, Prior DC, Anderson GA, Udseth HR, Smith RD. An Ion Funnel Interface for Improved Ion Focusing and Sensitivity Using Electrospray Ionization Mass Spectrometry Analytical Chemistry. 70: 4111-4119. PMID 9784749 DOI: 10.1021/Ac9802170  0.72
1998 Liu C, Tolić LP, Hofstadler SA, Harms AC, Smith RD, Kang C, Sinha N. Probing RegA/RNA interactions using electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry. Analytical Biochemistry. 262: 67-76. PMID 9735149 DOI: 10.1006/Abio.1998.2753  0.72
1998 Wunschel DS, Muddiman DC, Fox KF, Fox A, Smith RD. Heterogeneity in Bacillus cereus PCR products detected by ESI-FTICR mass spectrometry. Analytical Chemistry. 70: 1203-7. PMID 9530010 DOI: 10.1021/Ac971156T  0.72
1998 Tolić LP, Bruce JE, Lei QP, Anderson GA, Smith RD. In-trap cleanup of proteins from electrospray ionization using soft sustained off-resonance irradiation with fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 70: 405-8. PMID 9450366 DOI: 10.1021/Ac970828C  0.44
1997 Muddiman DC, Anderson GA, Hofstadler SA, Smith RD. Length and base composition of PCR-amplified nucleic acids using mass measurements from electrospray ionization mass spectrometry. Analytical Chemistry. 69: 1543-9. PMID 9109353 DOI: 10.1021/Ac961134R  0.44
1996 Muddiman DC, Cheng X, Udseth HR, Smith RD. Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 7: 697-706. PMID 24203563 DOI: 10.1016/S1044-0305(96)80516-2  0.44
1996 Muddiman DC, Wunschel DS, Liu C, Pasa-Tolić L, Fox KF, Fox A, Anderson GA, Smith RD. Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry. Analytical Chemistry. 68: 3705-12. PMID 8914480 DOI: 10.1021/Ac960689J  0.72
1996 Liu C, Wu Q, Harms AC, Smith RD. On-line microdialysis sample cleanup for electrospray ionization mass spectrometry of nucleic acid samples. Analytical Chemistry. 68: 3295-9. PMID 8797389 DOI: 10.1021/Ac960286J  0.72
1996 Cheng X, Harms AC, Goudreau PN, Terwilliger TC, Smith RD. Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 93: 7022-7. PMID 8692937 DOI: 10.1073/Pnas.93.14.7022  0.72
1996 Cheng X, Morin PE, Harms AC, Bruce JE, Ben-David Y, Smith RD. Mass spectrometric characterization of sequence-specific complexes of DNA and transcription factor PU.1 DNA binding domain. Analytical Biochemistry. 239: 35-40. PMID 8660622 DOI: 10.1006/Abio.1996.0287  0.72
1996 Wunschel DS, Fox KF, Fox A, Bruce JE, Muddiman DC, Smith RD. Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 10: 29-35. PMID 8563015 DOI: 10.1002/(Sici)1097-0231(19960115)10:1<29::Aid-Rcm430>3.0.Co;2-#  0.72
1995 Wu Q, Van Orden S, Cheng X, Bakhtiar R, Smith RD. Characterization of cytochrome c variants with high-resolution FTICR mass spectrometry: Correlation of fragmentation and structure Analytical Chemistry. 67: 2498-2509. PMID 8686880 DOI: 10.1021/Ac00110A027  0.72
1995 Bruce JE, Van Orden SL, Anderson GA, Hofstadler SA, Sherman MG, Rockwood AL, Smith RD. Selected ion accumulation of noncovalent complexes in a Fourier transform ion cyclotron resonance mass spectrometer Journal of Mass Spectrometry. 30: 124-133. DOI: 10.1002/Jms.1190300119  0.72
1994 Cheng X, Bakhtlar R, Van Orden S, Smith RD. Charge-state shifting of individual multiply-charged ions of bovine albumin dimer and molecular weight determination using an individual-ion approach Analytical Chemistry. 66: 2084-2087. PMID 8067525 DOI: 10.1021/Ac00085A025  0.72
1993 Wahl JH, Goodlett DR, Udseth HR, Smith RD. Use of small-diameter capillaries for increasing peptide and protein detection sensitivity in capillary electrophoresis-mass spectrometry. Electrophoresis. 14: 448-57. PMID 8354228 DOI: 10.1002/Elps.1150140170  0.32
1989 Smith RD, Udseth HR, Loo JA, Wright BW, Ross GA. Sample introduction and separation in capillary electrophoresis, and combination with mass spectrometric detection. Talanta. 36: 161-9. PMID 18964685 DOI: 10.1016/0039-9140(89)80091-8  0.44
1989 Smith RD, Fulton JL, Jones HK, Gale RW, Wright BW. The potential of reverse micelle mobile phases for supercritical fluid chromatography Journal of Chromatographic Science. 27: 309-317. DOI: 10.1093/Chromsci/27.6.309  0.72
1987 Kalinoski HT, Udseth HR, Wright BW, Smith RD. Analytical applications of capillary supercritical fluid chromatography-mass spectrometry Journal of Chromatography A. 400: 307-316. DOI: 10.1016/S0021-9673(01)81626-5  0.44
1987 Matson DW, Fulton JL, Smith RD. Formation of fine particles in supercritical fluid micelle systems Materials Letters. 6: 31-33. DOI: 10.1016/0167-577X(87)90096-6  0.72
1985 Smith RD, Udseth HR, Wright BW. Rapid and high resolution capillary supercritical fluid chromatography (SFC) and SFC/MS of trichothecene mycotoxins. Journal of Chromatographic Science. 23: 192-9. PMID 3998036 DOI: 10.1093/Chromsci/23.5.192  0.44
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