Yi Shang, Ph.D. - Publications

Affiliations: 
2013 Molecular and Cellular Biology Stony Brook University, Stony Brook, NY, United States 

99 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Cheng H, Jiang H, Yang J, Xu Y, Shang Y. BitMapper: an efficient all-mapper based on bit-vector computing. Bmc Bioinformatics. 16: 192. PMID 26063651 DOI: 10.1186/s12859-015-0626-9  0.6
2015 Lander S, Shang Y. EvoAE-A New Evolutionary Method for Training Autoencoders for Deep Learning Networks Proceedings - International Computer Software and Applications Conference. 2: 790-795. DOI: 10.1109/COMPSAC.2015.63  0.6
2015 Shi R, Chen Z, Wang H, Sun P, Trull T, Shang Y. MAAS - A mobile ambulatory assessment system for alcohol craving studies Proceedings - International Computer Software and Applications Conference. 3: 282-287. DOI: 10.1109/COMPSAC.2015.242  0.6
2014 Chen Y, Shang Y, Xu D. Multi-Dimensional Scaling and MODELLER-Based Evolutionary Algorithms for Protein Model Refinement. Proceedings of the ... Congress On Evolutionary Computation. Congress On Evolutionary Computation. 2014: 1038-1045. PMID 25844403 DOI: 10.1109/CEC.2014.6900443  0.6
2014 Yang J, Xu Y, Shang Y, Chen G. A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem. Ieee Transactions On Knowledge and Data Engineering. 26: 2599-2609. PMID 25400485 DOI: 10.1109/TKDE.2014.2304464  0.6
2014 Nguyen SP, Shang Y, Xu D. DL-PRO: A Novel Deep Learning Method for Protein Model Quality Assessment. Proceedings of ... International Joint Conference On Neural Networks / Co-Sponsored by Japanese Neural Network Society (Jnns) ... [Et Al.]. International Joint Conference On Neural Networks. 2014: 2071-2078. PMID 25392745 DOI: 10.1109/IJCNN.2014.6889891  0.6
2014 Wang D, Shang Y. A new active labeling method for deep learning Proceedings of the International Joint Conference On Neural Networks. 112-119. DOI: 10.1109/IJCNN.2014.6889457  0.6
2013 Wang Q, Shang C, Xu D, Shang Y. NEW MDS AND CLUSTERING BASED ALGORITHMS FOR PROTEIN MODEL QUALITY ASSESSMENT AND SELECTION. International Journal of Artificial Intelligence Tools : Architectures, Languages, Algorithms. 22: 1360006. PMID 24808625 DOI: 10.1142/S0218213013600063  0.6
2013 Yang J, Xu Y, Sun G, Shang Y. A new progressive algorithm for a multiple longest common subsequences problem and its efficient parallelization Ieee Transactions On Parallel and Distributed Systems. 24: 862-870. DOI: 10.1109/TPDS.2012.202  0.6
2013 Baskett P, Shang Y, Patterson MV, Trull T. Towards a system for body-area sensing and detection of alcohol craving and mood dysregulation 2013 Ieee 10th Consumer Communications and Networking Conference, Ccnc 2013. 875-876. DOI: 10.1109/CCNC.2013.6488575  0.6
2013 Baskett P, Shang Y, Zeng W, Guttersohn B. SDNAN: Software-defined networking in ad hoc networks of smartphones 2013 Ieee 10th Consumer Communications and Networking Conference, Ccnc 2013. 861-862. DOI: 10.1109/CCNC.2013.6488568  0.6
2013 Wang Y, Rui L, Shi W, Ho KC, Shang Y. Localization of an acoustic source using smart phones 2013 Ieee 10th Consumer Communications and Networking Conference, Ccnc 2013. 761-764. DOI: 10.1109/CCNC.2013.6488544  0.6
2013 Van Devender M, Shang Y. Wake IQ: Using a smartphone to reduce sleep inertia 2013 Ieee 10th Consumer Communications and Networking Conference, Ccnc 2013. 649-652. DOI: 10.1109/CCNC.2013.6488518  0.6
2013 Xu Y, Yang J, Zhao Y, Shang Y. An improved voting algorithm for planted (l, d) motif search Information Sciences. 237: 305-312. DOI: 10.1016/j.ins.2013.03.023  0.6
2012 Shang Y, Simmerling C. Molecular dynamics applied in drug discovery: the case of HIV-1 protease. Methods in Molecular Biology (Clifton, N.J.). 819: 527-49. PMID 22183556 DOI: 10.1007/978-1-61779-465-0_31  0.6
2012 Zhang J, He Z, Wang Q, Barz B, Kosztin I, Shang Y, Xu D. Prediction of protein tertiary structures using MUFOLD. Methods in Molecular Biology (Clifton, N.J.). 815: 3-13. PMID 22130979 DOI: 10.1007/978-1-61779-424-7_1  0.6
2012 Wang Q, Lobzhanidze A, Jang H, Zeng W, Shang Y, Yang J. Image and video based remote target localization and tracking on smartphones Proceedings of Spie - the International Society For Optical Engineering. 8396. DOI: 10.1117/12.921374  0.6
2012 Wang Q, Lobzhanidze A, Jang HI, Zeng W, Shang Y. Video based real-world remote target tracking on smartphones Proceedings - Ieee International Conference On Multimedia and Expo. 693-698. DOI: 10.1109/ICME.2012.188  0.6
2012 Su X, Schlinker B, Shang Y, Ye Z. Optimal media storage in federated cloud environments Ieee International Conference On Communications. 5518-5522. DOI: 10.1109/ICC.2012.6364939  0.6
2012 Shang Y, Zeng W, Ho DK, Wang D, Wang Q, Wang Y, Zhuang T, Lobzhanidze A, Rui L. Nest: Networked smartphones for target localization 2012 Ieee Consumer Communications and Networking Conference, Ccnc'2012. 732-736. DOI: 10.1109/CCNC.2012.6181154  0.6
2012 He Z, Zhang J, Xu Y, Shang Y, Xu D. Protein structural model selection based on protein-dependent scoring function Statistics and Its Interface. 5: 109-117.  0.6
2011 Wang Q, Vantasin K, Xu D, Shang Y. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction. Proteins. 79: 185-95. PMID 21997748 DOI: 10.1002/prot.23185  0.6
2011 Zhang J, Wang Q, Vantasin K, Zhang J, He Z, Kosztin I, Shang Y, Xu D. A multilayer evaluation approach for protein structure prediction and model quality assessment. Proteins. 79: 172-84. PMID 21997706 DOI: 10.1002/prot.23184  0.6
2011 Shi X, Zhang J, He Z, Shang Y, Xu D. A sampling-based method for ranking protein structural models by integrating multiple scores and features. Current Protein & Peptide Science. 12: 540-8. PMID 21787308 DOI: 10.2174/138920311796957658  0.6
2011 Wang Q, Shang Y, Xu D. Improving a consensus approach for protein structure selection by removing redundancy. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 1708-15. PMID 21519117 DOI: 10.1109/TCBB.2011.75  0.6
2011 Shang Y, Nguyen H, Wickstrom L, Okur A, Simmerling C. Improving the description of salt bridge strength and geometry in a Generalized Born model. Journal of Molecular Graphics & Modelling. 29: 676-84. PMID 21168352 DOI: 10.1016/j.jmgm.2010.11.013  0.6
2011 Qi Q, Shang Y. Comparison of probabilistic chain graphical model-based and gaussian process-based observation selections for wireless sensor scheduling International Journal of Distributed Sensor Networks. 2011. DOI: 10.1155/2011/928958  0.6
2011 Wang Q, Lobzhanidze A, Roy SD, Zeng W, Shang Y. Position It- An image-based remote target localization system on smartphones Mm'11 - Proceedings of the 2011 Acm Multimedia Conference and Co-Located Workshops. 821-822. DOI: 10.1145/2072298.2072476  0.6
2011 Wang Q, Korkin D, Shang Y. A fast multiple longest common subsequence (MLCS) algorithm Ieee Transactions On Knowledge and Data Engineering. 23: 321-334. DOI: 10.1109/TKDE.2010.123  0.6
2011 Ramlakhan K, Shang Y. A mobile automated skin lesion classification system Proceedings - International Conference On Tools With Artificial Intelligence, Ictai. 138-141. DOI: 10.1109/ICTAI.2011.29  0.6
2011 Wang Q, Shang Y, Xu D. A hybrid consensus and clustering method for protein structure selection Proceedings - International Conference On Tools With Artificial Intelligence, Ictai. 1-8. DOI: 10.1109/ICTAI.2011.10  0.6
2011 Yin B, Shi H, Shang Y. An efficient algorithm for constructing a connected dominating set in mobile ad hoc networks Journal of Parallel and Distributed Computing. 71: 27-39. DOI: 10.1016/j.jpdc.2010.05.008  0.6
2010 Zhang J, Wang Q, Barz B, He Z, Kosztin I, Shang Y, Xu D. MUFOLD: A new solution for protein 3D structure prediction. Proteins. 78: 1137-52. PMID 19927325 DOI: 10.1002/prot.22634  0.6
2010 Yin B, Shi H, Shang Y. A two-level topology control strategy for energy efficiency in wireless sensor networks International Journal of Wireless and Mobile Computing. 4: 41-49. DOI: 10.1504/IJWMC.2010.030974  0.6
2010 Shi H, Li X, Shang Y, Ma D. Error analysis of quantised RSSI based sensor network localisation International Journal of Wireless and Mobile Computing. 4: 31-40. DOI: 10.1504/IJWMC.2010.030973  0.6
2010 Zhuang P, Wang D, Shang Y. SMART: Simultaneous indoor localization and map construction using smartphones Proceedings of the International Joint Conference On Neural Networks. DOI: 10.1109/IJCNN.2010.5596552  0.6
2010 Qi Q, Shang Y, Shi H. An improved algorithm for optimal subset selection in chain graphical models 2010 Ieee World Congress On Computational Intelligence, Wcci 2010 - 2010 Ieee Congress On Evolutionary Computation, Cec 2010. DOI: 10.1109/CEC.2010.5586022  0.6
2010 Wang Q, Shang Y, Xu D. Protein structure selection based on consensus 2010 Ieee World Congress On Computational Intelligence, Wcci 2010 - 2010 Ieee Congress On Evolutionary Computation, Cec 2010. DOI: 10.1109/CEC.2010.5585949  0.6
2010 Yang J, Xu Y, Shang Y. An efficient parallel algorithm for longest common subsequence problem on GPUs Wce 2010 - World Congress On Engineering 2010. 1: 499-504.  0.6
2010 Wang Q, Pan M, Shang Y, Korkin D. A fast heuristic search algorithm for finding the longest common subsequence of multiple strings Proceedings of the National Conference On Artificial Intelligence. 3: 1287-1292.  0.6
2009 Ahmed AA, Li X, Shang Y, Shi H. MDS-based localization Localization Algorithms and Strategies For Wireless Sensor Networks. 198-229. DOI: 10.4018/978-1-60566-396-8.ch008  0.6
2009 Zhuang P, Wang D, Shang Y. Distributed distribution-based optimization for sensor fault detection Midwest Symposium On Circuits and Systems. 280-283. DOI: 10.1109/MWSCAS.2009.5236099  0.6
2009 Zhuang P, Wang D, Shang Y. Distributed faulty sensor detection Globecom - Ieee Global Telecommunications Conference. DOI: 10.1109/GLOCOM.2009.5425702  0.6
2009 Zhuang P, Shang Y, Hua B. Statistical methods to estimate vehicle count using traffic cameras Multidimensional Systems and Signal Processing. 20: 121-133. DOI: 10.1007/s11045-008-0068-x  0.6
2009 Zhuang P, Shang Y. Localize vehicles using wireless traffic sensors Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5801: 106-114. DOI: 10.1007/978-3-642-04385-7_8  0.6
2009 Wang Q, Korkin D, Shang Y. Efficient dominant point algorithms for the multiple longest common subsequence (MLCS) problem Ijcai International Joint Conference On Artificial Intelligence. 1494-1499.  0.6
2008 Wang Q, Shang Y, Xu D. A new clustering-based method for protein structure selection Proceedings of the International Joint Conference On Neural Networks. 2891-2898. DOI: 10.1109/IJCNN.2008.4634205  0.6
2008 Korkin D, Wang Q, Shang Y. An efficient parallel algorithm for the multiple longest common subsequence (MLCS) problem Proceedings of the International Conference On Parallel Processing. 354-363. DOI: 10.1109/ICPP.2008.79  0.6
2008 Li X, Shi H, Shang Y. Selective anchor placement algorithm for ad-hoc wireless sensor networks Ieee International Conference On Communications. 2359-2363. DOI: 10.1109/ICC.2008.449  0.6
2008 Zhuang P, Shang Y. Cobra: Correlation-based content authentication in wireless sensor networks Globecom - Ieee Global Telecommunications Conference. 1930-1934. DOI: 10.1109/GLOCOM.2008.ECP.373  0.6
2008 Zhuang P, Qi Q, Shang Y, Shi H. Model-based traffic prediction using sensor networks 2008 5th Ieee Consumer Communications and Networking Conference, Ccnc 2008. 136-140. DOI: 10.1109/ccnc08.2007.38  0.6
2008 Tubaishat M, Qi Q, Shang Y, Shi H. Wireless sensor-based traffic light control 2008 5th Ieee Consumer Communications and Networking Conference, Ccnc 2008. 702-706. DOI: 10.1109/ccnc08.2007.161  0.6
2008 Li X, Hua B, Shang Y, Xiong Y. A robust localization algorithm in wireless sensor networks Frontiers of Computer Science in China. 2: 438-450. DOI: 10.1007/s11704-008-0018-7  0.6
2007 Zhuang P, Wang Q, Shang Y, Shi H. Minimizing location uncertainty in deployment of access points 2007 2nd International Symposium On Wireless Pervasive Computing. 577-582. DOI: 10.1109/ISWPC.2007.342670  0.6
2007 Ahmed AA, Shi H, Shang Y. Map-based adaptive positioning in wireless sensor networks 2007 2nd International Symposium On Wireless Pervasive Computing. 93-98. DOI: 10.1109/ISWPC.2007.342580  0.6
2007 Yin B, Shi H, Shang Y. Analysis of energy consumption in clustered wireless sensor networks 2007 2nd International Symposium On Wireless Pervasive Computing. 77-82. DOI: 10.1109/ISWPC.2007.342577  0.6
2007 Yin B, Shi H, Shang Y. An efficient algorithm for constructing connected dominating set in Ad Hoc networks 2007 4th Annual Ieee Consumer Communications and Networking Conference, Ccnc 2007. 244-248. DOI: 10.1109/CCNC.2007.55  0.6
2007 Tubaishat M, Shang Y, Shi H. Adaptive traffic light control with wireless sensor networks 2007 4th Annual Ieee Consumer Communications and Networking Conference, Ccnc 2007. 187-191. DOI: 10.1109/CCNC.2007.44  0.6
2007 Wang Q, Shang Y. Optimal access point placement for target localization along trails 2007 4th Annual Ieee Consumer Communications and Networking Conference, Ccnc 2007. 823-827. DOI: 10.1109/CCNC.2007.167  0.6
2007 Shang Y, Shi H. Flexible energy efficient density control on wireless sensor networks International Journal of Distributed Sensor Networks. 3: 5-21. DOI: 10.1080/15501320601066727  0.6
2007 Selvakennedy S, Sinnappan S, Shang Y. A biologically-inspired clustering protocol for wireless sensor networks Computer Communications. 30: 2786-2801. DOI: 10.1016/j.comcom.2007.05.010  0.6
2007 Shang Y, Bondugula R, Xu D, Wang Q. A new method for protein tertiary structure prediction Proceedings of the 3rd Iasted International Conference On Computational Intelligence, Ci 2007. 13-18.  0.6
2007 Li X, Hua B, Shang Y, Guo Y, Yue L. Bilateration: An attack-resistant localization algorithm of wireless sensor network Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4808: 321-332.  0.6
2007 Zhuang P, Shang Y, Shi H. A new method of using sensor network for solving pursuit-evasion problem Journal of Networks. 2: 9-16.  0.6
2007 Yin B, Shi H, Shang Y, Ma D. Adaptive clustering and transmission range adjustment in wireless sensor networks Proceedings of the Sixth Iasted International Conference On Communications, Internet, and Information Technology, Ciit 2007. 166-171.  0.6
2006 Bondugula R, Xu D, Shang Y. A fast algorithm for low-resolution protein structure prediction. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5826-9. PMID 17946724 DOI: 10.1109/IEMBS.2006.259358  0.6
2006 Selvakennedy S, Sinnappan S, Shang Y. Data dissemination based on ant swarms for wireless sensor networks 2006 3rd Ieee Consumer Communications and Networking Conference, Ccnc 2006. 1: 132-136. DOI: 10.1109/CCNC.2006.1593002  0.6
2006 Shang Y, Fromherz MPJ, Crawford L. A new constraint test-case generator and the importance of hybrid optimizers European Journal of Operational Research. 173: 419-443. DOI: 10.1016/j.ejor.2005.02.073  0.6
2006 Shang Y, Ruml W, Fromherz MPJ. Positioning using local maps Ad Hoc Networks. 4: 240-253. DOI: 10.1016/j.adhoc.2004.06.001  0.6
2006 Selvakennedy S, Sinnappan S, Shang Y. T-ANT: A nature-inspired data gathering protocol for wireless sensor networks Journal of Communications. 1: 22-29.  0.6
2005 Ahmed AA, Shi H, Shang Y. Network-aware positioning in sensor networks 2nd Ieee International Conference On Mobile Ad-Hoc and Sensor Systems, Mass 2005. 2005: 267-274. DOI: 10.1109/MAHSS.2005.1542809  0.6
2005 Yin B, Shi H, Shang Y. A two-level strategy for topology control in wireless sensor networks Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 2: 358-362. DOI: 10.1109/ICPADS.2005.57  0.6
2005 Li X, Shi H, Shang Y. A sorted RSSI quantization based algorithm for sensor network localization Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 1: 557-563. DOI: 10.1109/ICPADS.2005.53  0.6
2005 Ahmed AA, Shang Y, Shi H. Variants of multidimensional scaling for node localization Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 1: 140-146. DOI: 10.1109/ICPADS.2005.292  0.6
2005 Shi H, Li X, Shang Y, Ma D. Cramer-rao bound analysis of quantized RSSI based localization in wireless sensor networks Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 2: 32-36. DOI: 10.1109/ICPADS.2005.118  0.6
2005 Shang Y, Shi H. Coverage and energy tradeoff in density control on sensor networks Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 1: 564-570. DOI: 10.1109/ICPADS.2005.117  0.6
2005 Su X, Shang Y, Wang T, Mai Y. Delay-constrained transmission of fine scalable coded content over P2P networks Signal Processing: Image Communication. 20: 21-37. DOI: 10.1016/j.image.2004.09.001  0.6
2005 Shang Y. Expert Systems The Electrical Engineering Handbook. 367-377. DOI: 10.1016/B978-012170960-0/50031-1  0.6
2004 Shang Y, Ruml W, Zhang Y, Fromherz M. Localization from connectivity in sensor networks Ieee Transactions On Parallel and Distributed Systems. 15: 961-974. DOI: 10.1109/TPDS.2004.67  0.6
2004 Shang Y, Ruml W. Improved MDS-based localization Proceedings - Ieee Infocom. 4: 2640-2651. DOI: 10.1109/INFCOM.2004.1354683  0.6
2004 Li X, Shi H, Shang Y. A partial-range-aware localization algorithm for Ad-hoc wireless sensor networks Proceedings - Conference On Local Computer Networks, Lcn. 77-83. DOI: 10.1016/j.tca.2004.04.020  0.6
2004 Li X, Shi H, Shang Y. A map-growing localization algorithm for ad-hoc wireless sensor networks Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 10: 395-402. DOI: 10.1016/j.apsusc.2004.02.022  0.6
2004 Shang Y, Shi H, Ahmed AA. Performance study of localization methods for ad-hoc sensor networks 2004 Ieee International Conference On Mobile Ad-Hoc and Sensor Systems. 184-193.  0.6
2004 Liu H, Shi H, Shang Y, Chen SS. Student modeling with timed assessment information Itre 2004 - 2nd International Conference On Information Technology: Research and Education - Proceedings. 121-125.  0.6
2004 Shang Y, Shen J, Shi H. A new density control algorithm for WSNs Proceedings - Conference On Local Computer Networks, Lcn. 577-578.  0.6
2004 Shang Y, Meng J, Shi H. A new algorithm for relative localization in wireless sensor networks Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 325-334.  0.6
2004 Su X, Shang Y, Mai Y. Delay-sensitive delivery of scalable coded images over peer-to-peer networks 2004 Ieee International Conference On Multimedia and Expo (Icme). 3: 1627-1630.  0.6
2004 Su X, Shang Y. Error concealment of transform coded images with continuous QoS International Conference On Information Technology: Coding Computing, Itcc. 2: 699-703.  0.6
2003 Shang Y, Fromherz MPJ, Zhang Y, Crawford LS. Constraint-based routing for ad-hoc networks Proceedings, Itre 2003 - International Conference On Information Technology: Research and Education. 306-310. DOI: 10.1109/ITRE.2003.1270627  0.6
2003 Ahmed AA, Shi H, Shang Y. A survery on network protocols for wireless sensor networks Proceedings, Itre 2003 - International Conference On Information Technology: Research and Education. 301-305. DOI: 10.1109/ITRE.2003.1270626  0.6
2003 Shang Y, Fromherz MPJ. Experimental complexity analysis of continuous constraint satisfaction problems Information Sciences. 153: 1-36. DOI: 10.1016/S0020-0255(03)00065-3  0.6
2003 Liu H, Shi H, Shang Y, Chen SS. SAM: A student assessment and modeling system Proceedings of the International Conference On Artificial Intelligence Ic-Ai 2003. 2: 513-518.  0.6
2003 Shang Y, Ruml W, Zhang Y, Fromherz MPJ. Localization from mere connectivity Proceedings of the International Symposium On Mobile Ad Hoc Networking and Computing (Mobihoc). 201-212.  0.6
2002 Li L, Shang Y, Zhang W. Improvement of HITS-based algorithms on web documents Proceedings of the 11th International Conference On World Wide Web, Www '02. 527-535. DOI: 10.1145/511446.511514  0.6
2002 Li L, Zhang W, Shang Y, Shi H. Fuzzy logic for search engine ranking Intelligent Engineering Systems Through Artificial Neural Networks. 12: 371-376.  0.6
2002 Zhang Y, Fromherz MPJ, Crawford LS, Shang Y. A general constraint-based control framework with examples in modular self-reconfigurable robots Ieee International Conference On Intelligent Robots and Systems. 3: 2163-2168.  0.6
2001 Shang Y, Li L, Wah B. Optimization design of biorthogonal filter banks for image compression Information Sciences. 132: 23-51. DOI: 10.1016/S0020-0255(01)00067-6  0.6
2001 Shi H, Shang Y, Ren F. Using natural language to access databases on the web Proceedings of the Ieee International Conference On Systems, Man and Cybernetics. 1: 429-434.  0.6
2001 Shi H, Shang Y, Chen SS. Smart instructional component based course content organization and delivery Proceedings of the Conference On Integrating Technology Into Computer Science Education, Iticse. 186.  0.6
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