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Alexey Petrov, Ph.D. - Publications

Affiliations: 
2006 University of Maryland, College Park, College Park, MD 
Area:
Molecular Biology, Genetics, Microbiology Biology, Cell Biology
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Huang T, Choi J, Prabhakar A, Puglisi JD, Petrov A. Partial spontaneous intersubunit rotations in pretranslocation ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2114979120. PMID 37801472 DOI: 10.1073/pnas.2114979120  0.554
2019 Wang J, Johnson AG, Lapointe CP, Choi J, Prabhakar A, Chen DH, Petrov AN, Puglisi JD. eIF5B gates the transition from translation initiation to elongation. Nature. PMID 31534220 DOI: 10.1038/s41586-019-1561-0  0.621
2018 Choi J, Indrisiunaite G, DeMirci H, Ieong KW, Wang J, Petrov A, Prabhakar A, Rechavi G, Dominissini D, He C, Ehrenberg M, Puglisi JD. 2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation. Nature Structural & Molecular Biology. PMID 29459784 DOI: 10.1038/S41594-018-0030-Z  0.656
2018 Choi J, Indrisiunaite G, DeMirci H, Ieong K, Wang J, Petrov A, Prabhakar A, Rechavi G, Dominissini D, He C, Ehrenberg M, Puglisi JD. How 2'-O-Methylation in mRNA Disrupts tRNA Decoding during Translation Elongation Biophysical Journal. 114: 592a. DOI: 10.1016/J.Bpj.2017.11.3237  0.376
2017 Johnson AG, Petrov AN, Fuchs G, Majzoub K, Grosely R, Choi J, Puglisi JD. Fluorescently-tagged human eIF3 for single-molecule spectroscopy. Nucleic Acids Research. PMID 29136179 DOI: 10.1093/nar/gkx1050  0.596
2017 Prabhakar A, Capece MC, Petrov A, Choi J, Puglisi JD. Post-termination Ribosome Intermediate Acts as the Gateway to Ribosome Recycling. Cell Reports. 20: 161-172. PMID 28683310 DOI: 10.1016/J.Celrep.2017.06.028  0.62
2017 Prabhakar A, Choi J, Wang J, Petrov A, Puglisi JD. Dynamic basis of fidelity and speed in translation: Coordinated multi-step mechanisms of elongation and termination. Protein Science : a Publication of the Protein Society. PMID 28480640 DOI: 10.1002/Pro.3190  0.662
2017 Johnson AG, Grosely R, Petrov AN, Puglisi JD. Dynamics of IRES-mediated translation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138065 DOI: 10.1098/rstb.2016.0177  0.583
2016 Chen J, Choi J, O'Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD. The molecular choreography of protein synthesis: translational control, regulation, and pathways. Quarterly Reviews of Biophysics. 49: e11. PMID 27658712 DOI: 10.1017/S0033583516000056  0.637
2016 Petrov A, Grosely R, Chen J, O'Leary SE, Puglisi JD. Multiple Parallel Pathways of Translation Initiation on the CrPV IRES. Molecular Cell. 62: 92-103. PMID 27058789 DOI: 10.1016/J.Molcel.2016.03.020  0.643
2016 Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD. N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nature Structural & Molecular Biology. PMID 26751643 DOI: 10.1038/Nsmb.3148  0.642
2015 Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621738 DOI: 10.1073/Pnas.1509761112  0.393
2015 Chen J, Coakley A, O'Connor M, Petrov A, O'Leary SE, Atkins JF, Puglisi JD. Coupling of mRNA Structure Rearrangement to Ribosome Movement during Bypassing of Non-coding Regions. Cell. 163: 1267-80. PMID 26590426 DOI: 10.1016/J.Cell.2015.10.064  0.673
2015 Capece MC, Kornberg GL, Petrov A, Puglisi JD. A simple real-time assay for in vitro translation. Rna (New York, N.Y.). 21: 296-305. PMID 25525154 DOI: 10.1261/Rna.047159.114  0.567
2015 Fuchs G, Petrov AN, Marceau CD, Popov LM, Chen J, O'Leary SE, Wang R, Carette JE, Sarnow P, Puglisi JD. Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site. Proceedings of the National Academy of Sciences of the United States of America. 112: 319-25. PMID 25516984 DOI: 10.1073/pnas.1421328111  0.537
2014 Chen J, Petrov A, Johansson M, Tsai A, O'Leary SE, Puglisi JD. Dynamic pathways of -1 translational frameshifting. Nature. 512: 328-32. PMID 24919156 DOI: 10.1038/Nature13428  0.7
2014 Noriega TR, Tsai A, Elvekrog MM, Petrov A, Neher SB, Chen J, Bradshaw N, Puglisi JD, Walter P. Signal recognition particle-ribosome binding is sensitive to nascent chain length. The Journal of Biological Chemistry. 289: 19294-305. PMID 24808175 DOI: 10.1074/Jbc.M114.563239  0.551
2014 Chen J, Dalal RV, Petrov AN, Tsai A, O'Leary SE, Chapin K, Cheng J, Ewan M, Hsiung PL, Lundquist P, Turner SW, Hsu DR, Puglisi JD. High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence. Proceedings of the National Academy of Sciences of the United States of America. 111: 664-9. PMID 24379388 DOI: 10.1073/pnas.1315735111  0.491
2014 Chen J, Petrov A, Johansson M, Tsai A, O'Leary SE, Puglisi JD. Single-Molecule Profiling of Ribosome Translational Phenomena Biophysical Journal. 106: 239a. DOI: 10.1016/J.Bpj.2013.11.1402  0.687
2013 O'Leary SE, Petrov A, Chen J, Puglisi JD. Dynamic recognition of the mRNA cap by Saccharomyces cerevisiae eIF4E. Structure (London, England : 1993). 21: 2197-207. PMID 24183571 DOI: 10.1016/J.Str.2013.09.016  0.669
2013 Petrov A, Wu T, Puglisi EV, Puglisi JD. RNA purification by preparative polyacrylamide gel electrophoresis. Methods in Enzymology. 530: 315-30. PMID 24034329 DOI: 10.1016/B978-0-12-420037-1.00017-8  0.559
2013 Petrov A, Tsa A, Puglisi JD. Analysis of RNA by analytical polyacrylamide gel electrophoresis. Methods in Enzymology. 530: 301-13. PMID 24034328 DOI: 10.1016/B978-0-12-420037-1.00016-6  0.56
2013 Chen J, Petrov A, Tsai A, O'Leary SE, Puglisi JD. Coordinated conformational and compositional dynamics drive ribosome translocation. Nature Structural & Molecular Biology. 20: 718-27. PMID 23624862 DOI: 10.1038/Nsmb.2567  0.605
2013 Puglisi J, Tsai A, Chen J, Kornbeg G, Jonansson M, Petrov A, O'Leary S, Mark C. 1SBP-03 Dynamics of translation elongation in real time(1SBP Advanced Single Molecule Sequencing System,Symposium,The 51th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 53: S87. DOI: 10.2142/Biophys.53.S87_4  0.556
2012 Chen J, Tsai A, O'Leary SE, Petrov A, Puglisi JD. Unraveling the dynamics of ribosome translocation. Current Opinion in Structural Biology. 22: 804-14. PMID 23142574 DOI: 10.1016/J.Sbi.2012.09.004  0.644
2012 Petrov A, Chen J, O'Leary S, Tsai A, Puglisi JD. Single-molecule analysis of translational dynamics. Cold Spring Harbor Perspectives in Biology. 4: a011551. PMID 22798542 DOI: 10.1101/Cshperspect.A011551  0.621
2012 Tsai A, Petrov A, Marshall RA, Korlach J, Uemura S, Puglisi JD. Heterogeneous pathways and timing of factor departure during translation initiation. Nature. 487: 390-3. PMID 22722848 DOI: 10.1038/Nature11172  0.661
2012 Chen J, Tsai A, Petrov A, Puglisi JD. Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics. Journal of the American Chemical Society. 134: 5734-7. PMID 22428667 DOI: 10.1021/Ja2119964  0.563
2012 Masuda T, Petrov AN, Iizuka R, Funatsu T, Puglisi JD, Uemura S. Initiation factor 2, tRNA, and 50S subunits cooperatively stabilize mRNAs on the ribosome during initiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 4881-5. PMID 22411833 DOI: 10.1073/pnas.1118452109  0.635
2011 Petrov A, Kornberg G, O'Leary S, Tsai A, Uemura S, Puglisi JD. Dynamics of the translational machinery. Current Opinion in Structural Biology. 21: 137-45. PMID 21256733 DOI: 10.1016/J.Sbi.2010.11.007  0.634
2010 Petrov A, Puglisi JD. Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations. Nucleic Acids Research. 38: e143. PMID 20501598 DOI: 10.1093/Nar/Gkq390  0.619
2010 Aitken CE, Petrov A, Puglisi JD. Single ribosome dynamics and the mechanism of translation. Annual Review of Biophysics. 39: 491-513. PMID 20192783 DOI: 10.1146/Annurev.Biophys.093008.131427  0.776
2008 Petrov AN, Meskauskas A, Roshwalb SC, Dinman JD. Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Research. 36: 6187-98. PMID 18824477 DOI: 10.1093/Nar/Gkn643  0.719
2008 Liao PY, Gupta P, Petrov AN, Dinman JD, Lee KH. A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting. Nucleic Acids Research. 36: 2619-29. PMID 18344525 DOI: 10.1093/Nar/Gkn100  0.7
2008 Swatkoski S, Gutierrez P, Wynne C, Petrov A, Dinman JD, Edwards N, Fenselau C. Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications. Journal of Proteome Research. 7: 579-86. PMID 18189344 DOI: 10.1021/Pr070502C  0.68
2007 Swatkoski S, Gutierrez P, Ginter J, Petrov A, Dinman JD, Edwards N, Fenselau C. Integration of residue-specific acid cleavage into proteomic workflows. Journal of Proteome Research. 6: 4525-7. PMID 17902642 DOI: 10.1021/Pr0704682  0.674
2007 Baxter-Roshek JL, Petrov AN, Dinman JD. Optimization of ribosome structure and function by rRNA base modification. Plos One. 2: e174. PMID 17245450 DOI: 10.1371/Journal.Pone.0000174  0.711
2005 Meskauskas A, Petrov AN, Dinman JD. Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis. Molecular and Cellular Biology. 25: 10863-74. PMID 16314511 DOI: 10.1128/Mcb.25.24.10863-10874.2005  0.743
2005 Kiparisov S, Petrov A, Meskauskas A, Sergiev PV, Dontsova OA, Dinman JD. Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Molecular Genetics and Genomics : Mgg. 274: 235-47. PMID 16047201 DOI: 10.1007/S00438-005-0020-9  0.703
2004 Petrov A, Meskauskas A, Dinman JD. Ribosomal protein L3: influence on ribosome structure and function. Rna Biology. 1: 59-65. PMID 17194937 DOI: 10.4161/Rna.1.1.957  0.735
2003 Plant EP, Jacobs KL, Harger JW, Meskauskas A, Jacobs JL, Baxter JL, Petrov AN, Dinman JD. The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. Rna (New York, N.Y.). 9: 168-74. PMID 12554858 DOI: 10.1261/Rna.2132503  0.721
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