Yoshiaki Z. Ohkubo, Ph.D. - Publications

Affiliations: 
2000 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Pharmaceutical Chemistry, General Biophysics

2/22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2000 Ohkubo YZ, Crippen GM. Potential energy function for continuous state models of globular proteins. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 363-79. PMID 11108468 DOI: 10.1089/106652700750050835  1
1998 Crippen GM, Ohkubo YZ. Statistical mechanics of protein folding by exhaustive enumeration. Proteins. 32: 425-37. PMID 9726414 DOI: 10.1002/(Sici)1097-0134(19980901)32:4<425::Aid-Prot3>3.0.Co;2-F  1
Low-probability matches
2015 Madsen JJ, Ohkubo YZ, Peters GH, Faber JH, Tajkhorshid E, Olsen OH. Membrane Interaction of the Factor VIIIa Discoidin Domains in Atomistic Detail. Biochemistry. PMID 26346528 DOI: 10.1021/Acs.Biochem.5B00417  0.01
2012 Ohkubo YZ, Pogorelov TV, Arcario MJ, Christensen GA, Tajkhorshid E. Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model. Biophysical Journal. 102: 2130-9. PMID 22824277 DOI: 10.1016/J.Bpj.2012.03.015  0.04
2011 Tavoosi N, Davis-Harrison RL, Pogorelov TV, Ohkubo YZ, Arcario MJ, Clay MC, Rienstra CM, Tajkhorshid E, Morrissey JH. Molecular determinants of phospholipid synergy in blood clotting. The Journal of Biological Chemistry. 286: 23247-53. PMID 21561861 DOI: 10.1074/Jbc.M111.251769  0.04
2011 Arcario MJ, Ohkubo YZ, Tajkhorshid E. Capturing spontaneous partitioning of peripheral proteins using a biphasic membrane-mimetic model. The Journal of Physical Chemistry. B. 115: 7029-37. PMID 21561114 DOI: 10.1021/Jp109631Y  0.04
2011 Boettcher JM, Davis-Harrison RL, Clay MC, Nieuwkoop AJ, Ohkubo YZ, Tajkhorshid E, Morrissey JH, Rienstra CM. Atomic view of calcium-induced clustering of phosphatidylserine in mixed lipid bilayers. Biochemistry. 50: 2264-73. PMID 21294564 DOI: 10.1021/Bi1013694  0.04
2010 Ohkubo YZ, Morrissey JH, Tajkhorshid E. Dynamical view of membrane binding and complex formation of human factor VIIa and tissue factor. Journal of Thrombosis and Haemostasis : Jth. 8: 1044-53. PMID 20180816 DOI: 10.1111/J.1538-7836.2010.03826.X  0.04
2010 Morrissey JH, Davis-Harrison RL, Tavoosi N, Ke K, Pureza V, Boettcher JM, Clay MC, Rienstra CM, Ohkubo YZ, Pogorelov TV, Tajkhorshid E. Protein-phospholipid interactions in blood clotting. Thrombosis Research. 125: S23-5. PMID 20129649 DOI: 10.1016/J.Thromres.2010.01.027  0.04
2009 Morrissey JH, Pureza V, Davis-Harrison RL, Sligar SG, Rienstra CM, Kijac AZ, Ohkubo YZ, Tajkhorshid E. Protein-membrane interactions: blood clotting on nanoscale bilayers. Journal of Thrombosis and Haemostasis : Jth. 7: 169-72. PMID 19630793 DOI: 10.1111/J.1538-7836.2009.03390.X  0.04
2008 Morrissey JH, Pureza V, Davis-Harrison RL, Sligar SG, Ohkubo YZ, Tajkhorshid E. Blood clotting reactions on nanoscale phospholipid bilayers. Thrombosis Research. 122: S23-6. PMID 18691494 DOI: 10.1016/S0049-3848(08)70014-8  0.04
2008 Ohkubo YZ, Tajkhorshid E. Distinct structural and adhesive roles of Ca2+ in membrane binding of blood coagulation factors. Structure (London, England : 1993). 16: 72-81. PMID 18184585 DOI: 10.1016/J.Str.2007.10.021  0.04
2008 Wang Y, Ohkubo YZ, Tajkhorshid E. Chapter 12 Gas Conduction of Lipid Bilayers and Membrane Channels Current Topics in Membranes. 60: 343-367. DOI: 10.1016/S1063-5823(08)00012-4  0.04
2006 Ohkubo YZ, Thorpe IF. Evaluating the conformational entropy of macromolecules using an energy decomposition approach. The Journal of Chemical Physics. 124: 024910. PMID 16422651 DOI: 10.1063/1.2138696  0.04
2003 Ohkubo YZ, Brooks CL. Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A. Proceedings of the National Academy of Sciences of the United States of America. 100: 13916-21. PMID 14615586 DOI: 10.1073/Pnas.2334257100  0.04
2013 Ohkubo Y, Tajkhorshid E. Exploring Membrane-Bound form of the C2 Domain by HMMM Model Biophysical Journal. 104: 432a. DOI: 10.1016/J.Bpj.2012.11.2405  0.01
2012 Ohkubo YZ, Tajkhorshid E. Formation of Ternary Complex of Factor VIIa, Tissue Factor, and Factor X on the Surface of Anionic Membrane Biophysical Journal. 102: 260a. DOI: 10.1016/J.Bpj.2011.11.1432  0.01
2011 Ohkubo YZ, Pogorelov TV, Arcario MJ, Tajkhorshid E. Spontaneous Binding of Membrane-Anchoring Proteins Captured with a Highly Mobile Membrane-Mimetic Model Biophysical Journal. 100: 639a-640a. DOI: 10.1016/J.Bpj.2010.12.3674  0.01
2011 Pogorelov TV, Ohkubo YZ, Arcario MJ, Tajkhorshid E. Charachterizing Structure and Dynamics of Calcium-Induced Clusters of Phosphatidylserine in Mixed Lipid Bilayers Biophysical Journal. 100: 172a. DOI: 10.1016/J.Bpj.2010.12.1164  0.01
2010 Pogorelov T, Ohkubo YZ, Tajkhorshid E. Characterizing the Structure and Dynamics of Nanodisc Lipid Bilayers of Different Compositions Biophysical Journal. 98: 665a. DOI: 10.1016/J.Bpj.2009.12.4257  0.01
2010 Ohkubo YZ, Tajkhorshid E. Dynamical Basis of the Enhancement of the Enzymatic Activity of Factor VIIa by Tissue Factor Biophysical Journal. 98: 689a. DOI: 10.1016/J.Bpj.2009.12.3787  0.01
2009 Ohkubo YZ, Tajkhorshid E. Membrane Association and Insertion of the C2 Domain to Anionic Lipid Bilayers under Tension Biophysical Journal. 96: 610a. DOI: 10.1016/J.Bpj.2008.12.3226  0.01
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