Alan A. Dombkowski, Ph.D. - Publications

2001 University of Michigan, Ann Arbor, Ann Arbor, MI 
Pharmaceutical Chemistry, Molecular Biology, Biochemistry

31/37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Edwards H, Rubenstein M, Dombkowski AA, Caldwell JT, Chu R, Xavier AC, Thummel R, Neely M, Matherly LH, Ge Y, Taub JW. Gene Signature of High White Blood Cell Count in B-Precursor Acute Lymphoblastic Leukemia. Plos One. 11: e0161539. PMID 27536776 DOI: 10.1371/Journal.Pone.0161539  1
2016 Rondini EA, Duniec-Dmuchowski Z, Cukovic D, Dombkowski AA, Kocarek TA. Differential regulation of gene expression by cholesterol biosynthesis inhibitors that reduce (pravastatin) or enhance (squalestatin 1) nonsterol isoprenoid levels in primary cultured mouse and rat hepatocytes. The Journal of Pharmacology and Experimental Therapeutics. PMID 27225895 DOI: 10.1124/jpet.116.233312  1
2015 Barrett KG, Fang H, Cukovic D, Dombkowski AA, Kocarek TA, Runge-Morris M. Upregulation of UGT2B4 Expression by 3'-Phosphoadenosine-5'-Phosphosulfate Synthase Knockdown: Implications for Coordinated Control of Bile Acid Conjugation. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 43: 1061-70. PMID 25948711 DOI: 10.1124/Dmd.114.061440  1
2014 Dombkowski AA, Batista CE, Cukovic D, Carruthers NJ, Ranganathan R, Shukla U, Stemmer PM, Chugani HT, Chugani DC. Cortical Tubers: Windows into Dysregulation of Epilepsy Risk and Synaptic Signaling Genes by MicroRNAs. Cerebral Cortex (New York, N.Y. : 1991). PMID 25452577 DOI: 10.1093/Cercor/Bhu276  1
2014 Dombkowski AA, Sultana KZ, Craig DB. Protein disulfide engineering. Febs Letters. 588: 206-12. PMID 24291258 DOI: 10.1016/j.febslet.2013.11.024  1
2013 Craig DB, Dombkowski AA. Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins. Bmc Bioinformatics. 14: 346. PMID 24289175 DOI: 10.1186/1471-2105-14-346  1
2013 Caldwell JT, Edwards H, Dombkowski AA, Buck SA, Matherly LH, Ge Y, Taub JW. Overexpression of GATA1 confers resistance to chemotherapy in acute megakaryocytic Leukemia. Plos One. 8: e68601. PMID 23874683 DOI: 10.1371/journal.pone.0068601  1
2012 Craig DB, Kannan S, Dombkowski AA. Augmented annotation and orthologue analysis for Oryctolagus cuniculus: Better Bunny. Bmc Bioinformatics. 13: 84. PMID 22568790 DOI: 10.1186/1471-2105-13-84  1
2012 Brush GS, Najor NA, Dombkowski AA, Cukovic D, Sawarynski KE. Yeast IME2 functions early in meiosis upstream of cell cycle-regulated SBF and MBF targets. Plos One. 7: e31575. PMID 22393365 DOI: 10.1371/Journal.Pone.0031575  1
2012 Simon KW, Ma H, Dombkowski AA, Cabelof DC. Aging alters folate homeostasis and DNA damage response in colon. Mechanisms of Ageing and Development. 133: 75-82. PMID 22306610 DOI: 10.1016/j.mad.2012.01.003  1
2011 Xavier AC, Edwards H, Dombkowski AA, Balci TB, Berman JN, Dellaire G, Xie C, Buck SA, Matherly LH, Ge Y, Taub JW. A unique role of GATA1s in Down syndrome acute megakaryocytic leukemia biology and therapy. Plos One. 6: e27486. PMID 22110660 DOI: 10.1371/journal.pone.0027486  1
2011 Dombkowski AA, Sultana Z, Craig DB, Jamil H. In silico analysis of combinatorial microRNA activity reveals target genes and pathways associated with breast cancer metastasis. Cancer Informatics. 10: 13-29. PMID 21552493 DOI: 10.4137/Cin.S6631  1
2011 Wang LS, Dombkowski AA, Seguin C, Rocha C, Cukovic D, Mukundan A, Henry C, Stoner GD. Mechanistic basis for the chemopreventive effects of black raspberries at a late stage of rat esophageal carcinogenesis. Molecular Carcinogenesis. 50: 291-300. PMID 21465577 DOI: 10.1002/mc.20634  1
2010 Ventrella-Lucente LF, Unnikrishnan A, Pilling AB, Patel HV, Kushwaha D, Dombkowski AA, Schmelz EM, Cabelof DC, Heydari AR. Folate deficiency provides protection against colon carcinogenesis in DNA polymerase beta haploinsufficient mice. The Journal of Biological Chemistry. 285: 19246-58. PMID 20404327 DOI: 10.1074/jbc.M109.069807  1
2010 Wauthier V, Sugathan A, Meyer RD, Dombkowski AA, Waxman DJ. Intrinsic sex differences in the early growth hormone responsiveness of sex-specific genes in mouse liver. Molecular Endocrinology (Baltimore, Md.). 24: 667-78. PMID 20150183 DOI: 10.1210/Jcem.95.2.9993  1
2010 Chopra DP, Dombkowski AA, Stemmer PM, Parker GC. Intestinal epithelial cells in vitro. Stem Cells and Development. 19: 131-42. PMID 19580443 DOI: 10.1089/Scd.2009.0109  1
2009 Simon K, Mukundan A, Dewundara S, Van Remmen H, Dombkowski AA, Cabelof DC. Transcriptional profiling of the age-related response to genotoxic stress points to differential DNA damage response with age. Mechanisms of Ageing and Development. 130: 637-47. PMID 19679149 DOI: 10.1016/j.mad.2009.07.007  1
2009 Edwards H, Xie C, LaFiura KM, Dombkowski AA, Buck SA, Boerner JL, Taub JW, Matherly LH, Ge Y. RUNX1 regulates phosphoinositide 3-kinase/AKT pathway: role in chemotherapy sensitivity in acute megakaryocytic leukemia. Blood. 114: 2744-52. PMID 19638627 DOI: 10.1182/blood-2008-09-179812  1
2008 Lechner JF, Reen RK, Dombkowski AA, Cukovic D, Salagrama S, Wang LS, Stoner GD. Effects of a black raspberry diet on gene expression in the rat esophagus. Nutrition and Cancer. 60: 61-9. PMID 19003582 DOI: 10.1080/01635580802393118  1
2008 Stoner GD, Dombkowski AA, Reen RK, Cukovic D, Salagrama S, Wang LS, Lechner JF. Carcinogen-altered genes in rat esophagus positively modulated to normal levels of expression by both black raspberries and phenylethyl isothiocyanate. Cancer Research. 68: 6460-7. PMID 18676871 DOI: 10.1158/0008-5472.CAN-08-0146  1
2008 Holloway MG, Miles GD, Dombkowski AA, Waxman DJ. Liver-specific hepatocyte nuclear factor-4alpha deficiency: greater impact on gene expression in male than in female mouse liver. Molecular Endocrinology (Baltimore, Md.). 22: 1274-86. PMID 18276827 DOI: 10.1210/Me.2007-0564  1
2008 Ge Y, LaFiura KM, Dombkowski AA, Chen Q, Payton SG, Buck SA, Salagrama S, Diakiw AE, Matherly LH, Taub JW. The role of the proto-oncogene ETS2 in acute megakaryocytic leukemia biology and therapy. Leukemia. 22: 521-9. PMID 18094719 DOI: 10.1038/sj.leu.2405066  1
2007 Reen RK, Dombkowski AA, Kresty LA, Cukovic D, Mele JM, Salagrama S, Nines R, Stoner GD. Effects of phenylethyl isothiocyanate on early molecular events in N-nitrosomethylbenzylamine-induced cytotoxicity in rat esophagus. Cancer Research. 67: 6484-92. PMID 17616710 DOI: 10.1158/0008-5472.CAN-06-4531  1
2006 Dombkowski AA, Cukovic D, Novak RF. Secretome analysis of microarray data reveals extracellular events associated with proliferative potential in a cell line model of breast disease. Cancer Letters. 241: 49-58. PMID 16298039 DOI: 10.1016/j.canlet.2005.10.008  1
2006 Ge Y, Dombkowski AA, LaFiura KM, Tatman D, Yedidi RS, Stout ML, Buck SA, Massey G, Becton DL, Weinstein HJ, Ravindranath Y, Matherly LH, Taub JW. Differential gene expression, GATA1 target genes, and the chemotherapy sensitivity of Down syndrome megakaryocytic leukemia. Blood. 107: 1570-81. PMID 16249385 DOI: 10.1182/Blood-2005-06-2219  1
2005 Yang VC, Naik SS, Song H, Dombkowski AA, Crippen G, Liang JF. Construction and characterization of a t-PA mutant for use in ATTEMPTS: a drug delivery system for achieving targeted thrombolysis. Journal of Controlled Release : Official Journal of the Controlled Release Society. 110: 164-76. PMID 16260060 DOI: 10.1016/J.Jconrel.2005.09.027  1
2004 Dombkowski AA, Thibodeau BJ, Starcevic SL, Novak RF. Gene-specific dye bias in microarray reference designs. Febs Letters. 560: 120-4. PMID 14988009 DOI: 10.1016/S0014-5793(04)00083-3  1
2004 Lee I, Dombkowski AA, Athey BD. Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray. Nucleic Acids Research. 32: 681-90. PMID 14757833 DOI: 10.1093/nar/gkh196  1
2003 Dombkowski AA. Disulfide by Design: a computational method for the rational design of disulfide bonds in proteins. Bioinformatics (Oxford, England). 19: 1852-3. PMID 14512360 DOI: 10.1093/bioinformatics/btg231  1
2002 Anthony LC, Dombkowski AA, Burgess RR. Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding. Journal of Bacteriology. 184: 2634-41. PMID 11976292 DOI: 10.1128/Jb.184.10.2634-2641.2002  1
2000 Dombkowski AA, Crippen GM. Disulfide recognition in an optimized threading potential. Protein Engineering. 13: 679-89. PMID 11112506 DOI: 10.1093/Protein/13.10.679  1
Low-probability matches
2019 Dombkowski AA, Cukovic D, Bagla S, Jones M, Caruso JA, Chugani HT, Chugani DC. TLR7 activation in epilepsy of tuberous sclerosis complex. Inflammation Research : Official Journal of the European Histamine Research Society ... [Et Al.]. PMID 31511910 DOI: 10.1007/S00011-019-01283-3  0.04
2017 Bagla S, Cukovic D, Asano E, Sood S, Luat A, Chugani HT, Chugani DC, Dombkowski AA. A distinct microRNA expression profile is associated with α[(11)C]-methyl-L-tryptophan (AMT) PET uptake in epileptogenic cortical tubers resected from patients with tuberous sclerosis complex. Neurobiology of Disease. PMID 28993242 DOI: 10.1016/J.Nbd.2017.10.004  0.04
2020 Dos Santos JM, Joiakim A, Kaplan DJ, Putt DA, Perez Bakovic G, Servoss SL, Rybicki BA, Dombkowski AA, Kim H. Levels of plasma glycan-binding auto-IgG biomarkers improve the accuracy of prostate cancer diagnosis. Molecular and Cellular Biochemistry. PMID 32816187 DOI: 10.1007/s11010-020-03876-7  0.01
2018 Bagla S, Dombkowski AA. Neuroinflammatory Nexus of Pediatric Epilepsy. Journal of Pediatric Epilepsy. 7: 32-39. PMID 31709125 DOI: 10.1055/S-0038-1668601  0.01
2018 Pan P, Dombkowski AA, Wang LS, Stoner GD. A nutrigenetic approach for investigating the chemopreventive effects of black raspberries during the development of preneoplastic esophagi in rats. Journal of Berry Research. 8: 263-274. PMID 30613310 DOI: 10.3233/JBR-180346  0.01
2018 Caruso JA, Carruthers NJ, Thibodeau B, Geddes TJ, Dombkowski AA, Stemmer PM. Global Signaling Profiling in a Human Model of Tumorigenic Progression Indicates a Role for Alternative RNA Splicing in Cellular Reprogramming. International Journal of Molecular Sciences. 19. PMID 30241319 DOI: 10.3390/Ijms19102847  0.01
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