| Year |
Citation |
Score |
| 2024 |
Zhang X, Xu J, Hu J, Zhang S, Hao Y, Zhang D, Qian H, Wang D, Fu XD. Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature Communications. 15: 6031. PMID 39019869 DOI: 10.1038/s41467-024-50298-w |
0.435 |
|
| 2024 |
Jayne ND, Liang Z, Lim DH, Chen PB, Diaz C, Arimoto KI, Xia L, Liu M, Ren B, Fu XD, Zhang DE. RUNX1 C-terminal Mutations Impair Blood Cell Differentiation by Perturbing Specific Enhancer-Promoter Networks. Blood Advances. PMID 38513139 DOI: 10.1182/bloodadvances.2023011484 |
0.662 |
|
| 2023 |
Hao Y, Hu J, Xue Y, Dowdy SF, Mobley WC, Qian H, Fu XD. Reply to: Ptbp1 deletion does not induce astrocyte-to-neuron conversion. Nature. 618: E8-E13. PMID 37286647 DOI: 10.1038/s41586-023-06067-8 |
0.304 |
|
| 2023 |
Hao Y, Cai T, Liu C, Zhang X, Fu XD. Sequential Polyadenylation to Enable Alternative mRNA 3' End Formation. Molecules and Cells. 46: 57-64. PMID 36697238 DOI: 10.14348/molcells.2023.2176 |
0.301 |
|
| 2022 |
Benoit Bouvrette LP, Wang X, Boulais J, Kong J, Syed EU, Blue SM, Zhan L, Olson S, Stanton R, Wei X, Yee B, Van Nostrand EL, Fu XD, Burge CB, Graveley BR, et al. RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. Nucleic Acids Research. PMID 36321651 DOI: 10.1093/nar/gkac971 |
0.591 |
|
| 2022 |
Yuan B, Zhou X, Suzuki K, Ramos-Mandujano G, Wang M, Tehseen M, Cortés-Medina LV, Moresco JJ, Dunn S, Hernandez-Benitez R, Hishida T, Kim NY, Andijani MM, Bi C, Ku M, ... Fu XD, et al. Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing. Nature Communications. 13: 3646. PMID 35752626 DOI: 10.1038/s41467-022-31220-8 |
0.316 |
|
| 2021 |
Li L, Luo H, Lim DH, Han L, Li Y, Fu XD, Qi Y. Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis. Nature Plants. 7: 1364-1378. PMID 34650265 DOI: 10.1038/s41477-021-01004-x |
0.615 |
|
| 2021 |
Qian H, Fu XD. Brain Repair by Cell Replacement via In Situ Neuronal Reprogramming. Annual Review of Genetics. PMID 34310194 DOI: 10.1146/annurev-genet-071719-023616 |
0.325 |
|
| 2021 |
Davis AG, Einstein JM, Zheng D, Jayne ND, Fu XD, Tian B, Yeo GW, Zhang DE. A CRISPR RNA-binding protein screen reveals regulators of RUNX1 isoform generation. Blood Advances. 5: 1310-1323. PMID 33656539 DOI: 10.1182/bloodadvances.2020002090 |
0.339 |
|
| 2021 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... Fu XD, et al. Author Correction: A large-scale binding and functional map of human RNA-binding proteins. Nature. PMID 33402748 DOI: 10.1038/s41586-020-03067-w |
0.579 |
|
| 2020 |
Hao Y, Wang D, Wu S, Li X, Shao C, Zhang P, Chen JY, Lim DH, Fu XD, Chen R, He S. Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division. Genome Research. PMID 33060173 DOI: 10.1101/gr.256131.119 |
0.634 |
|
| 2020 |
Gao K, Cheng M, Zuo X, Lin J, Hoogewijs K, Murphy MP, Fu XD, Zhang X. Active RNA interference in mitochondria. Cell Research. PMID 32807841 DOI: 10.1038/S41422-020-00394-5 |
0.385 |
|
| 2020 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... Fu XD, et al. A large-scale binding and functional map of human RNA-binding proteins. Nature. 583: 711-719. PMID 32728246 DOI: 10.1038/S41586-020-2077-3 |
0.661 |
|
| 2020 |
Qian H, Kang X, Hu J, Zhang D, Liang Z, Meng F, Zhang X, Xue Y, Maimon R, Dowdy SF, Devaraj NK, Zhou Z, Mobley WC, Cleveland DW, Fu XD. Author Correction: Reversing a model of Parkinson's disease with in situ converted nigral neurons. Nature. PMID 32724206 DOI: 10.1038/S41586-020-2583-3 |
0.389 |
|
| 2020 |
Qian H, Kang X, Hu J, Zhang D, Liang Z, Meng F, Zhang X, Xue Y, Maimon R, Dowdy SF, Devaraj NK, Zhou Z, Mobley WC, Cleveland DW, Fu XD. Reversing a model of Parkinson's disease with in situ converted nigral neurons. Nature. 582: 550-556. PMID 32581380 DOI: 10.1038/S41586-020-2388-4 |
0.417 |
|
| 2020 |
Van Nostrand EL, Pratt GA, Yee BA, Wheeler EC, Blue SM, Mueller J, Park SS, Garcia KE, Gelboin-Burkhart C, Nguyen TB, Rabano I, Stanton R, Sundararaman B, Wang R, Fu XD, et al. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins. Genome Biology. 21: 90. PMID 32252787 DOI: 10.1186/S13059-020-01982-9 |
0.639 |
|
| 2020 |
Gou LT, Lim DH, Ma W, Aubol BE, Hao Y, Wang X, Zhao J, Liang Z, Shao C, Zhang X, Meng F, Li H, Zhang X, Xu R, Li D, ... ... Fu XD, et al. Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation. Cell. PMID 32169215 DOI: 10.1016/J.Cell.2020.02.020 |
0.629 |
|
| 2020 |
Fu XD. RNA helicases regulate RNA condensates. Cell Research. PMID 32152418 DOI: 10.1038/S41422-020-0296-7 |
0.373 |
|
| 2020 |
Zhou B, Li X, Luo D, Lim DH, Zhou Y, Fu XD. Author Correction: GRID-seq for comprehensive analysis of global RNA-chromatin interactions. Nature Protocols. PMID 32060493 DOI: 10.1038/S41596-020-0308-6 |
0.635 |
|
| 2020 |
Chen JY, Lim DH, Fu XD. Mechanistic Dissection of RNA-Binding Proteins in Regulated Gene Expression at Chromatin Levels. Cold Spring Harbor Symposia On Quantitative Biology. PMID 31900328 DOI: 10.1101/Sqb.2019.84.039222 |
0.677 |
|
| 2019 |
Dai P, Wang X, Gou LT, Li ZT, Wen Z, Chen ZG, Hua MM, Zhong A, Wang L, Su H, Wan H, Qian K, Liao L, Li J, Tian B, ... ... Fu XD, et al. A Translation-Activating Function of MIWI/piRNA during Mouse Spermiogenesis. Cell. 179: 1566-1581.e16. PMID 31835033 DOI: 10.1016/J.Cell.2019.11.022 |
0.348 |
|
| 2019 |
Li X, Fu XD. Author Correction: Chromatin-associated RNAs as facilitators of functional genomic interactions. Nature Reviews. Genetics. PMID 31273305 DOI: 10.1038/S41576-019-0155-X |
0.416 |
|
| 2019 |
Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, ... Fu XD, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/J.Cell.2019.06.001 |
0.668 |
|
| 2019 |
Zhou B, Li X, Luo D, Lim DH, Zhou Y, Fu XD. GRID-seq for comprehensive analysis of global RNA-chromatin interactions. Nature Protocols. PMID 31175345 DOI: 10.1038/S41596-019-0172-4 |
0.663 |
|
| 2019 |
Li X, Fu XD. Chromatin-associated RNAs as facilitators of functional genomic interactions. Nature Reviews. Genetics. PMID 31160792 DOI: 10.1038/S41576-019-0135-1 |
0.483 |
|
| 2019 |
Chen JY, Zhang X, Fu XD, Chen L. R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1. Nature Protocols. PMID 30996261 DOI: 10.1038/S41596-019-0154-6 |
0.317 |
|
| 2018 |
López-Erauskin J, Tadokoro T, Baughn MW, Myers B, McAlonis-Downes M, Chillon-Marinas C, Asiaban JN, Artates J, Bui AT, Vetto AP, Lee SK, Le AV, Sun Y, Jambeau M, Boubaker J, ... ... Fu XD, et al. ALS/FTD-Linked Mutation in FUS Suppresses Intra-axonal Protein Synthesis and Drives Disease Without Nuclear Loss-of-Function of FUS. Neuron. PMID 30344044 DOI: 10.1016/J.Neuron.2018.09.044 |
0.305 |
|
| 2018 |
Hu J, Qian H, Xue Y, Fu XD. PTB/nPTB: master regulators of neuronal fate in mammals. Biophysics Reports. 4: 204-214. PMID 30310857 DOI: 10.1007/S41048-018-0066-Y |
0.519 |
|
| 2018 |
Hatcher JM, Wu G, Zeng C, Zhu J, Meng F, Patel S, Wang W, Ficarro SB, Leggett AL, Powell CE, Marto JA, Zhang K, Ki Ngo JC, Fu XD, Zhang T, et al. SRPKIN-1: A Covalent SRPK1/2 Inhibitor that Potently Converts VEGF from Pro-angiogenic to Anti-angiogenic Isoform. Cell Chemical Biology. PMID 29478907 DOI: 10.1016/J.Chembiol.2018.01.013 |
0.38 |
|
| 2018 |
Bao X, Guo X, Yin M, Tariq M, Lai Y, Kanwal S, Zhou J, Li N, Lv Y, Pulido-Quetglas C, Wang X, Ji L, Khan MJ, Zhu X, Luo Z, ... Fu XD, et al. Capturing the interactome of newly transcribed RNA. Nature Methods. PMID 29431736 DOI: 10.1038/Nmeth.4595 |
0.615 |
|
| 2018 |
Chen L, Chen JY, Huang YJ, Gu Y, Qiu J, Qian H, Shao C, Zhang X, Hu J, Li H, He S, Zhou Y, Abdel-Wahab O, Zhang DE, Fu XD. The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations. Molecular Cell. 69: 412-425.e6. PMID 29395063 DOI: 10.1016/J.Molcel.2017.12.029 |
0.53 |
|
| 2018 |
Huang Y, Yan M, Chen J, Chen L, Kim E, Shima T, Davis AG, Miyauchi S, Stoner SA, Fu X, Abdel-Wahab OI, Zhang D. RUNX1 Deficiency Cooperates with SRSF2 Mutation to Further Disrupt RNA Splicing and Exacerbate Myelodysplastic Syndromes in Mouse Models Blood. 132: 1796-1796. DOI: 10.1182/Blood-2018-99-119104 |
0.323 |
|
| 2017 |
Ouyang H, Zhang K, Fox-Walsh K, Yang Y, Zhang C, Huang J, Li H, Zhou Y, Fu XD. The RNA binding protein EWS is broadly involved in the regulation of pri-miRNA processing in mammalian cells. Nucleic Acids Research. 45: 12481-12495. PMID 30053258 DOI: 10.1093/Nar/Gkx912 |
0.346 |
|
| 2017 |
Chen L, Chen JY, Zhang X, Gu Y, Xiao R, Shao C, Tang P, Qian H, Luo D, Li H, Zhou Y, Zhang DE, Fu XD. R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters. Molecular Cell. PMID 29104020 DOI: 10.1016/J.Molcel.2017.10.008 |
0.489 |
|
| 2017 |
Fu XD. Exploiting the Hidden Treasure of Detained Introns. Cancer Cell. 32: 393-395. PMID 29017049 DOI: 10.1016/J.Ccell.2017.09.005 |
0.337 |
|
| 2017 |
Li X, Zhou B, Chen L, Gou LT, Li H, Fu XD. GRID-seq reveals the global RNA-chromatin interactome. Nature Biotechnology. PMID 28922346 DOI: 10.1038/Nbt.3968 |
0.473 |
|
| 2017 |
Jiang L, Shao C, Wu QJ, Chen G, Zhou J, Yang B, Li H, Gou LT, Zhang Y, Wang Y, Yeo GW, Zhou Y, Fu XD. NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing. Nature Structural & Molecular Biology. PMID 28846091 DOI: 10.1038/Nsmb.3455 |
0.326 |
|
| 2017 |
Gou LT, Kang JY, Dai P, Wang X, Li F, Zhao S, Zhang M, Hua MM, Lu Y, Zhu Y, Li Z, Chen H, Wu LG, Li D, Fu XD, et al. Ubiquitination-Deficient Mutations in Human Piwi Cause Male Infertility by Impairing Histone-to-Protamine Exchange during Spermiogenesis. Cell. PMID 28552346 DOI: 10.1097/Ogx.0000000000000482 |
0.353 |
|
| 2017 |
Fu XD. Both sides of the same coin: Rac1 alternative splicing by EGF signaling. Cell Research. PMID 28186082 DOI: 10.1038/Cr.2017.19 |
0.362 |
|
| 2017 |
Gao C, Hu J, Wei C, Hsiao YE, Ren S, Xue Y, Zhou Y, Zhang J, Chen J, Xiao X, Fu X, Xing Y, Wang Y. Function Beyond RNA Splicing for RBFox Family Members in Heart Journal of Molecular and Cellular Cardiology. 112: 146-147. DOI: 10.1016/J.Yjmcc.2017.07.050 |
0.333 |
|
| 2016 |
Yi J, Shen HF, Qiu JS, Huang MF, Zhang WJ, Ding JC, Zhu XY, Zhou Y, Fu XD, Liu W. JMJD6 and U2AF65 co-regulate alternative splicing in both JMJD6 enzymatic activity dependent and independent manner. Nucleic Acids Research. PMID 27899633 DOI: 10.1093/Nar/Gkw1144 |
0.49 |
|
| 2016 |
Zhu K, Lei PJ, Ju LG, Wang X, Huang K, Yang B, Shao C, Zhu Y, Wei G, Fu XD, Li L, Wu M. SPOP-containing complex regulates SETD2 stability and H3K36me3-coupled alternative splicing. Nucleic Acids Research. PMID 27614073 DOI: 10.1093/Nar/Gkw814 |
0.385 |
|
| 2016 |
Qiu J, Zhou B, Thol F, Zhou Y, Chen L, Shao C, DeBoever C, Hou J, Li H, Chaturvedi A, Ganser A, Bejar R, Zhang DE, Fu XD, Heuser M. Distinct splicing signatures affect converged pathways in myelodysplastic syndrome patients carrying mutations in different splicing regulators. Rna (New York, N.Y.). PMID 27492256 DOI: 10.1261/Rna.056101.116 |
0.335 |
|
| 2016 |
Aubol BE, Wu G, Keshwani MM, Movassat M, Fattet L, Hertel KJ, Fu XD, Adams JA. Release of SR Proteins from CLK1 by SRPK1: A Symbiotic Kinase System for Phosphorylation Control of Pre-mRNA Splicing. Molecular Cell. PMID 27397683 DOI: 10.1016/J.Molcel.2016.05.034 |
0.479 |
|
| 2016 |
Wei C, Xiao R, Chen L, Cui H, Zhou Y, Xue Y, Hu J, Zhou B, Tsutsui T, Qiu J, Li H, Fu XD. RBFox2 Binds Nascent RNA to Globally Regulate Polycomb Complex 2 Targeting in Mammalian Genomes. Molecular Cell. PMID 27211866 DOI: 10.1016/J.Molcel.2016.04.013 |
0.455 |
|
| 2016 |
Xue Y, Qian H, Hu J, Zhou B, Zhou Y, Hu X, Karakhanyan A, Pang Z, Fu XD. Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells. Nature Neuroscience. PMID 27110916 DOI: 10.1038/Nn.4297 |
0.456 |
|
| 2016 |
Zhang ZN, Freitas BC, Qian H, Lux J, Acab A, Trujillo CA, Herai RH, Nguyen Huu VA, Wen JH, Joshi-Barr S, Karpiak JV, Engler AJ, Fu XD, Muotri AR, Almutairi A. Layered hydrogels accelerate iPSC-derived neuronal maturation and reveal migration defects caused by MeCP2 dysfunction. Proceedings of the National Academy of Sciences of the United States of America. PMID 26944080 DOI: 10.1073/Pnas.1521255113 |
0.348 |
|
| 2016 |
Chen L, Liu Z, Zhou B, Wei C, Zhou Y, Rosenfeld MG, Fu X, Chisholm AD, Jin Y. Author response: CELF RNA binding proteins promote axon regeneration in C. elegans and mammals through alternative splicing of Syntaxins Elife. DOI: 10.7554/Elife.16072.030 |
0.365 |
|
| 2015 |
Gao C, Ren S, Lee JH, Qiu J, Chapski DJ, Rau CD, Zhou Y, Abdellatif M, Nakano A, Vondriska TM, Xiao X, Fu XD, Chen JN, Wang Y. RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure. The Journal of Clinical Investigation. PMID 26619120 DOI: 10.1172/Jci84015 |
0.36 |
|
| 2015 |
Chen F, Zhou Y, Qi YB, Khivansara V, Li H, Chun SY, Kim JK, Fu XD, Jin Y. Context-dependent modulation of Pol II CTD phosphatase SSUP-72 regulates alternative polyadenylation in neuronal development. Genes & Development. 29: 2377-90. PMID 26588990 DOI: 10.1101/Gad.266650.115 |
0.42 |
|
| 2015 |
Martinez NM, Agosto L, Qiu J, Mallory MJ, Gazzara MR, Barash Y, Fu XD, Lynch KW. Widespread JNK-dependent alternative splicing induces a positive feedback loop through CELF2-mediated regulation of MKK7 during T-cell activation. Genes & Development. 29: 2054-66. PMID 26443849 DOI: 10.1101/Gad.267245.115 |
0.629 |
|
| 2015 |
Cole BS, Tapescu I, Allon SJ, Mallory MJ, Qiu J, Lake RJ, Fan HY, Fu XD, Lynch KW. Global analysis of physical and functional RNA targets of hnRNP L reveals distinct sequence and epigenetic features of repressed and enhanced exons. Rna (New York, N.Y.). PMID 26437669 DOI: 10.1261/Rna.052969.115 |
0.556 |
|
| 2015 |
Tang FC, Wang HY, Ma MM, Guan TW, Pan L, Yao DC, Chen YL, Chen WB, Tu YS, Fu XD. CyPA-CD147-ERK1/2-cyclin D2 signaling pathway is upregulated during rat left ventricular hypertrophy. Sheng Li Xue Bao : [Acta Physiologica Sinica]. 67: 393-400. PMID 26300251 |
0.408 |
|
| 2015 |
Yarosh CA, Tapescu I, Thompson MG, Qiu J, Mallory MJ, Fu XD, Lynch KW. TRAP150 interacts with the RNA-binding domain of PSF and antagonizes splicing of numerous PSF-target genes in T cells. Nucleic Acids Research. PMID 26261210 DOI: 10.1093/Nar/Gkv816 |
0.626 |
|
| 2015 |
Wang L, Zhou Y, Xu L, Xiao R, Lu X, Chen L, Chong J, Li H, He C, Fu XD, Wang D. Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature. PMID 26123024 DOI: 10.1038/Nature14482 |
0.326 |
|
| 2015 |
Wu T, Fu XD. Genomic functions of U2AF in constitutive and regulated splicing. Rna Biology. 12: 479-85. PMID 25901584 DOI: 10.1080/15476286.2015.1020272 |
0.434 |
|
| 2015 |
Mallory MJ, Allon SJ, Qiu J, Gazzara MR, Tapescu I, Martinez NM, Fu XD, Lynch KW. Induced transcription and stability of CELF2 mRNA drives widespread alternative splicing during T-cell signaling. Proceedings of the National Academy of Sciences of the United States of America. 112: E2139-48. PMID 25870297 DOI: 10.1073/Pnas.1423695112 |
0.571 |
|
| 2015 |
Chang AT, Liu Y, Ayyanathan K, Benner C, Jiang Y, Prokop JW, Paz H, Wang D, Li HR, Fu XD, Rauscher FJ, Yang J. An evolutionarily conserved DNA architecture determines target specificity of the TWIST family bHLH transcription factors. Genes & Development. 29: 603-16. PMID 25762439 DOI: 10.1101/Gad.242842.114 |
0.383 |
|
| 2015 |
Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S. MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes. Cell Research. 25: 193-207. PMID 25582079 DOI: 10.1038/Cr.2015.4 |
0.394 |
|
| 2015 |
Keshwani MM, Aubol BE, Fattet L, Ma CT, Qiu J, Jennings PA, Fu XD, Adams JA. Conserved proline-directed phosphorylation regulates SR protein conformation and splicing function. The Biochemical Journal. 466: 311-22. PMID 25529026 DOI: 10.1042/Bj20141373 |
0.518 |
|
| 2014 |
Fu XD. Non-coding RNA: a new frontier in regulatory biology. National Science Review. 1: 190-204. PMID 25821635 DOI: 10.1093/Nsr/Nwu008 |
0.409 |
|
| 2014 |
Fong N, Kim H, Zhou Y, Ji X, Qiu J, Saldi T, Diener K, Jones K, Fu XD, Bentley DL. Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate. Genes & Development. 28: 2663-76. PMID 25452276 DOI: 10.1101/Gad.252106.114 |
0.387 |
|
| 2014 |
Shao C, Yang B, Wu T, Huang J, Tang P, Zhou Y, Zhou J, Qiu J, Jiang L, Li H, Chen G, Sun H, Zhang Y, Denise A, Zhang DE, Fu XD, et al. Mechanisms for U2AF to define 3' splice sites and regulate alternative splicing in the human genome. Nature Structural & Molecular Biology. 21: 997-1005. PMID 25326705 DOI: 10.1038/Nsmb.2906 |
0.41 |
|
| 2014 |
Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022 |
0.42 |
|
| 2014 |
Fu XD, Ares M. Context-dependent control of alternative splicing by RNA-binding proteins. Nature Reviews. Genetics. 15: 689-701. PMID 25112293 DOI: 10.1038/Nrg3778 |
0.451 |
|
| 2014 |
Aubol BE, Plocinik RM, Keshwani MM, McGlone ML, Hagopian JC, Ghosh G, Fu XD, Adams JA. N-terminus of the protein kinase CLK1 induces SR protein hyperphosphorylation. The Biochemical Journal. 462: 143-52. PMID 24869919 DOI: 10.1042/Bj20140494 |
0.799 |
|
| 2014 |
Schaffer AE, Eggens VR, Caglayan AO, Reuter MS, Scott E, Coufal NG, Silhavy JL, Xue Y, Kayserili H, Yasuno K, Rosti RO, Abdellateef M, Caglar C, Kasher PR, Cazemier JL, ... ... Fu XD, et al. CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration. Cell. 157: 651-63. PMID 24766810 DOI: 10.1016/J.Cell.2014.03.049 |
0.384 |
|
| 2014 |
Wang P, Zhou Z, Hu A, Ponte de Albuquerque C, Zhou Y, Hong L, Sierecki E, Ajiro M, Kruhlak M, Harris C, Guan KL, Zheng ZM, Newton AC, Sun P, Zhou H, ... Fu XD, et al. Both decreased and increased SRPK1 levels promote cancer by interfering with PHLPP-mediated dephosphorylation of Akt. Molecular Cell. 54: 378-91. PMID 24703948 DOI: 10.1016/J.Molcel.2014.03.007 |
0.379 |
|
| 2014 |
Zhou Y, Li HR, Huang J, Jin G, Fu XD. Multiplex analysis of polyA-linked sequences (MAPS): an RNA-seq strategy to profile poly(A+) RNA. Methods in Molecular Biology (Clifton, N.J.). 1125: 169-78. PMID 24590789 DOI: 10.1007/978-1-62703-971-0_15 |
0.336 |
|
| 2014 |
Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL. De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function. Plos Computational Biology. 10: e1003442. PMID 24499931 DOI: 10.1371/Journal.Pcbi.1003442 |
0.395 |
|
| 2014 |
Li Q, Zheng S, Han A, Lin CH, Stoilov P, Fu XD, Black DL. The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation. Elife. 3: e01201. PMID 24448406 DOI: 10.7554/Elife.01201 |
0.325 |
|
| 2013 |
Mo S, Ji X, Fu XD. Unique role of SRSF2 in transcription activation and diverse functions of the SR and hnRNP proteins in gene expression regulation. Transcription. 4: 251-9. PMID 24406341 |
0.373 |
|
| 2013 |
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, ... Fu XD, et al. Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration. Proceedings of the National Academy of Sciences of the United States of America. 110: E4530-9. PMID 24170860 DOI: 10.1073/Pnas.1318835110 |
0.386 |
|
| 2013 |
Fu XD, Sun XQ, Wang HY, Guo JF, Zhang GZ, Xu QH. Genetic polymorphisms of the TLR4 gene and their association with susceptibility to type 2 diabetes mellitus in the Chinese population. Genetics and Molecular Research : Gmr. 12: 3813-20. PMID 24085443 DOI: 10.4238/2013.September.19.13 |
0.412 |
|
| 2013 |
Yoshioka N, Gros E, Li HR, Kumar S, Deacon DC, Maron C, Muotri AR, Chi NC, Fu XD, Yu BD, Dowdy SF. Efficient generation of human iPSCs by a synthetic self-replicative RNA. Cell Stem Cell. 13: 246-54. PMID 23910086 DOI: 10.1016/J.Stem.2013.06.001 |
0.356 |
|
| 2013 |
Aubol BE, Plocinik RM, Hagopian JC, Ma CT, McGlone ML, Bandyopadhyay R, Fu XD, Adams JA. Partitioning RS domain phosphorylation in an SR protein through the CLK and SRPK protein kinases. Journal of Molecular Biology. 425: 2894-909. PMID 23707382 DOI: 10.1016/J.Jmb.2013.05.013 |
0.794 |
|
| 2013 |
Ji X, Zhou Y, Pandit S, Huang J, Li H, Lin CY, Xiao R, Burge CB, Fu XD. SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase. Cell. 153: 855-68. PMID 23663783 DOI: 10.1016/J.Cell.2013.04.028 |
0.428 |
|
| 2013 |
Pandit S, Zhou Y, Shiue L, Coutinho-Mansfield G, Li H, Qiu J, Huang J, Yeo GW, Ares M, Fu XD. Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing. Molecular Cell. 50: 223-35. PMID 23562324 DOI: 10.1016/J.Molcel.2013.03.001 |
0.445 |
|
| 2013 |
Zhou Z, Fu XD. Regulation of splicing by SR proteins and SR protein-specific kinases. Chromosoma. 122: 191-207. PMID 23525660 DOI: 10.1007/S00412-013-0407-Z |
0.483 |
|
| 2013 |
Komeno Y, Qiu J, Lin L, Xu Y, Thol F, Monterroza DD, Dekelver R, Chen L, Heuser M, Fu X, Zhang D. SRSF2 Is Essential For Hematopoiesis and Its Mutations Dysregulate Alternative RNA Splicing In MDS Blood. 122: 261-261. DOI: 10.1182/Blood.V122.21.261.261 |
0.338 |
|
| 2012 |
Dembowski JA, An P, Scoulos-Hanson M, Yeo G, Han J, Fu XD, Grabowski PJ. Alternative Splicing of a Novel Inducible Exon Diversifies the CASK Guanylate Kinase Domain. Journal of Nucleic Acids. 2012: 816237. PMID 23008758 DOI: 10.1155/2012/816237 |
0.448 |
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| 2012 |
Tripathi V, Song DY, Zong X, Shevtsov SP, Hearn S, Fu XD, Dundr M, Prasanth KV. SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles. Molecular Biology of the Cell. 23: 3694-706. PMID 22855529 DOI: 10.1091/mbc.E12-03-0206 |
0.359 |
|
| 2012 |
Zhou Z, Qiu J, Liu W, Zhou Y, Plocinik RM, Li H, Hu Q, Ghosh G, Adams JA, Rosenfeld MG, Fu XD. The Akt-SRPK-SR axis constitutes a major pathway in transducing EGF signaling to regulate alternative splicing in the nucleus. Molecular Cell. 47: 422-33. PMID 22727668 DOI: 10.1016/J.Molcel.2012.05.014 |
0.404 |
|
| 2012 |
Li H, Qiu J, Fu XD. RASL-seq for massively parallel and quantitative analysis of gene expression. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 4.13.1-9. PMID 22470064 DOI: 10.1002/0471142727.Mb0413S98 |
0.334 |
|
| 2012 |
Ji X, Fu XD. The mediator couples transcription and splicing. Molecular Cell. 45: 433-4. PMID 22365824 DOI: 10.1016/J.Molcel.2012.02.003 |
0.414 |
|
| 2012 |
Xiao R, Tang P, Yang B, Huang J, Zhou Y, Shao C, Li H, Sun H, Zhang Y, Fu XD. Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation. Molecular Cell. 45: 656-68. PMID 22325991 DOI: 10.1016/J.Molcel.2012.01.009 |
0.424 |
|
| 2011 |
Hamilton BA, Fu XD. Tracking intron removal in real time. Developmental Cell. 21: 979-80. PMID 22172665 DOI: 10.1016/J.Devcel.2011.11.010 |
0.365 |
|
| 2011 |
Plocinik RM, Li S, Liu T, Hailey KL, Whitesides J, Whitehouse J, Ma CT, Fu XD, Gosh G, Woods VL, Jennings PA, Adams JA. Regulating SR protein phosphorylation through regions outside the kinase domain of SRPK1. Journal of Molecular Biology. 410: 131-45. PMID 21600902 DOI: 10.1016/J.Jmb.2011.04.077 |
0.456 |
|
| 2011 |
Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, Qiu J, Liu W, Kaikkonen MU, Ohgi KA, Glass CK, Rosenfeld MG, Fu XD. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature. 474: 390-4. PMID 21572438 DOI: 10.1038/Nature10006 |
0.388 |
|
| 2011 |
Cho S, Hoang A, Sinha R, Zhong XY, Fu XD, Krainer AR, Ghosh G. Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly. Proceedings of the National Academy of Sciences of the United States of America. 108: 8233-8. PMID 21536904 DOI: 10.1073/Pnas.1017700108 |
0.661 |
|
| 2011 |
Fox-Walsh K, Davis-Turak J, Zhou Y, Li H, Fu XD. A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation. Genomics. 98: 266-71. PMID 21515359 DOI: 10.1016/J.Ygeno.2011.04.003 |
0.399 |
|
| 2011 |
Han J, Xiong J, Wang D, Fu XD. Pre-mRNA splicing: where and when in the nucleus. Trends in Cell Biology. 21: 336-43. PMID 21514162 DOI: 10.1016/J.Tcb.2011.03.003 |
0.435 |
|
| 2011 |
Ahn EY, DeKelver RC, Lo MC, Nguyen TA, Matsuura S, Boyapati A, Pandit S, Fu XD, Zhang DE. SON controls cell-cycle progression by coordinated regulation of RNA splicing. Molecular Cell. 42: 185-98. PMID 21504830 DOI: 10.1016/j.molcel.2011.03.014 |
0.342 |
|
| 2011 |
Huang C, Xie MH, Liu W, Yang B, Yang F, Huang J, Huang J, Wu Q, Fu XD, Zhang Y. A structured RNA in hepatitis B virus post-transcriptional regulatory element represses alternative splicing in a sequence-independent and position-dependent manner. The Febs Journal. 278: 1533-46. PMID 21371260 DOI: 10.1111/J.1742-4658.2011.08077.X |
0.418 |
|
| 2011 |
Lovci MT, Li HR, Fu XD, Yeo GW. RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy. Methods in Molecular Biology (Clifton, N.J.). 729: 247-55. PMID 21365495 DOI: 10.1007/978-1-61779-065-2_16 |
0.383 |
|
| 2011 |
Harismendy O, Notani D, Song X, Rahim NG, Tanasa B, Heintzman N, Ren B, Fu XD, Topol EJ, Rosenfeld MG, Frazer KA. 9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response. Nature. 470: 264-8. PMID 21307941 DOI: 10.1038/Nature09753 |
0.51 |
|
| 2011 |
Han J, Ding JH, Byeon CW, Kim JH, Hertel KJ, Jeong S, Fu XD. SR proteins induce alternative exon skipping through their activities on the flanking constitutive exons. Molecular and Cellular Biology. 31: 793-802. PMID 21135118 DOI: 10.1128/Mcb.01117-10 |
0.434 |
|
| 2011 |
Garcia-Bassets I, Wang D, Benner C, Wenbo L, Su X, Glass CK, Rosenfeld MG, Fu X. Abstract 930: Reprogramming the transcriptional response to hormone through functionally-distinct classes of gene enhancers in prostate cancer cells Cancer Research. 71: 930-930. DOI: 10.1158/1538-7445.Am2011-930 |
0.345 |
|
| 2011 |
Plocinik RM, Li S, Liu T, Hailey KL, Whitesides J, Ma C, Fu X, Gosh G, Woods VL, Jennings PA, Adams JA. Corrigendum to “Regulating SR Protein Phosphorylation through Regions Outside the Kinase Domain of SRPK1” [J. Mol. Biol. 410/1 (2011) 131–145] Journal of Molecular Biology. 411: 511. DOI: 10.1016/J.Jmb.2011.06.029 |
0.311 |
|
| 2010 |
Liu W, Zhou Y, Hu Z, Sun T, Denise A, Fu XD, Zhang Y. Regulation of splicing enhancer activities by RNA secondary structures. Febs Letters. 584: 4401-7. PMID 20888818 DOI: 10.1016/J.Febslet.2010.09.039 |
0.372 |
|
| 2010 |
Ma CT, Ghosh G, Fu XD, Adams JA. Mechanism of dephosphorylation of the SR protein ASF/SF2 by protein phosphatase 1. Journal of Molecular Biology. 403: 386-404. PMID 20826166 DOI: 10.1016/J.Jmb.2010.08.024 |
0.512 |
|
| 2010 |
Fox-Walsh K, Fu XD. Chromatin: the final frontier in splicing regulation? Developmental Cell. 18: 336-8. PMID 20230741 DOI: 10.1016/J.Devcel.2010.03.002 |
0.323 |
|
| 2009 |
Xue Y, Zhou Y, Wu T, Zhu T, Ji X, Kwon YS, Zhang C, Yeo G, Black DL, Sun H, Fu XD, Zhang Y. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Molecular Cell. 36: 996-1006. PMID 20064465 DOI: 10.1016/J.Molcel.2009.12.003 |
0.454 |
|
| 2009 |
Nunez E, Fu XD, Rosenfeld MG. Nuclear organization in the 3D space of the nucleus - cause or consequence? Current Opinion in Genetics & Development. 19: 424-36. PMID 19846290 DOI: 10.1016/J.Gde.2009.07.005 |
0.333 |
|
| 2009 |
Zhong XY, Wang P, Han J, Rosenfeld MG, Fu XD. SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Molecular Cell. 35: 1-10. PMID 19595711 DOI: 10.1016/J.Molcel.2009.06.016 |
0.489 |
|
| 2009 |
Ma CT, Hagopian JC, Ghosh G, Fu XD, Adams JA. Regiospecific phosphorylation control of the SR protein ASF/SF2 by SRPK1. Journal of Molecular Biology. 390: 618-34. PMID 19477182 DOI: 10.1016/J.Jmb.2009.05.060 |
0.783 |
|
| 2009 |
Zhong XY, Ding JH, Adams JA, Ghosh G, Fu XD. Regulation of SR protein phosphorylation and alternative splicing by modulating kinetic interactions of SRPK1 with molecular chaperones. Genes & Development. 23: 482-95. PMID 19240134 DOI: 10.1101/Gad.1752109 |
0.464 |
|
| 2009 |
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nature Structural & Molecular Biology. 16: 130-7. PMID 19136955 DOI: 10.1038/Nsmb.1545 |
0.437 |
|
| 2008 |
Li H, Lovci MT, Kwon YS, Rosenfeld MG, Fu XD, Yeo GW. Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model. Proceedings of the National Academy of Sciences of the United States of America. 105: 20179-84. PMID 19088194 DOI: 10.1073/Pnas.0807121105 |
0.346 |
|
| 2008 |
Hu Q, Kwon YS, Nunez E, Cardamone MD, Hutt KR, Ohgi KA, Garcia-Bassets I, Rose DW, Glass CK, Rosenfeld MG, Fu XD. Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules. Proceedings of the National Academy of Sciences of the United States of America. 105: 19199-204. PMID 19052240 DOI: 10.1073/Pnas.0810634105 |
0.347 |
|
| 2008 |
Hagopian JC, Ma CT, Meade BR, Albuquerque CP, Ngo JC, Ghosh G, Jennings PA, Fu XD, Adams JA. Adaptable molecular interactions guide phosphorylation of the SR protein ASF/SF2 by SRPK1. Journal of Molecular Biology. 382: 894-909. PMID 18687337 DOI: 10.1016/J.Jmb.2008.07.055 |
0.805 |
|
| 2008 |
Lin S, Coutinho-Mansfield G, Wang D, Pandit S, Fu XD. The splicing factor SC35 has an active role in transcriptional elongation. Nature Structural & Molecular Biology. 15: 819-26. PMID 18641664 DOI: 10.1038/Nsmb.1461 |
0.662 |
|
| 2008 |
Pandit S, Wang D, Fu XD. Functional integration of transcriptional and RNA processing machineries. Current Opinion in Cell Biology. 20: 260-5. PMID 18436438 DOI: 10.1016/J.Ceb.2008.03.001 |
0.412 |
|
| 2008 |
Nunez E, Kwon YS, Hutt KR, Hu Q, Cardamone MD, Ohgi KA, Garcia-Bassets I, Rose DW, Glass CK, Rosenfeld MG, Fu XD. Nuclear receptor-enhanced transcription requires motor- and LSD1-dependent gene networking in interchromatin granules. Cell. 132: 996-1010. PMID 18358812 DOI: 10.1016/J.Cell.2008.01.051 |
0.361 |
|
| 2008 |
Ngo JC, Giang K, Chakrabarti S, Ma CT, Huynh N, Hagopian JC, Dorrestein PC, Fu XD, Adams JA, Ghosh G. A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1. Molecular Cell. 29: 563-76. PMID 18342604 DOI: 10.1016/J.Molcel.2007.12.017 |
0.784 |
|
| 2008 |
Ma CT, Velazquez-Dones A, Hagopian JC, Ghosh G, Fu XD, Adams JA. Ordered multi-site phosphorylation of the splicing factor ASF/SF2 by SRPK1. Journal of Molecular Biology. 376: 55-68. PMID 18155240 DOI: 10.1016/J.Jmb.2007.08.029 |
0.794 |
|
| 2007 |
Lin S, Fu XD. SR proteins and related factors in alternative splicing. Advances in Experimental Medicine and Biology. 623: 107-22. PMID 18380343 DOI: 10.1007/978-0-387-77374-2_7 |
0.682 |
|
| 2007 |
Coutinho-Mansfield GC, Xue Y, Zhang Y, Fu XD. PTB/nPTB switch: a post-transcriptional mechanism for programming neuronal differentiation. Genes & Development. 21: 1573-7. PMID 17606635 DOI: 10.1101/Gad.1575607 |
0.322 |
|
| 2007 |
Xiao R, Sun Y, Ding JH, Lin S, Rose DW, Rosenfeld MG, Fu XD, Li X. Splicing regulator SC35 is essential for genomic stability and cell proliferation during mammalian organogenesis. Molecular and Cellular Biology. 27: 5393-402. PMID 17526736 DOI: 10.1128/Mcb.00288-07 |
0.636 |
|
| 2007 |
Lukasiewicz R, Velazquez-Dones A, Huynh N, Hagopian J, Fu XD, Adams J, Ghosh G. Structurally unique yeast and mammalian serine-arginine protein kinases catalyze evolutionarily conserved phosphorylation reactions. The Journal of Biological Chemistry. 282: 23036-43. PMID 17517895 DOI: 10.1074/Jbc.M611305200 |
0.787 |
|
| 2007 |
Wang J, Scully K, Zhu X, Cai L, Zhang J, Prefontaine GG, Krones A, Ohgi KA, Zhu P, Garcia-Bassets I, Liu F, Taylor H, Lozach J, Jayes FL, Korach KS, ... ... Fu XD, et al. Opposing LSD1 complexes function in developmental gene activation and repression programmes. Nature. 446: 882-7. PMID 17392792 DOI: 10.1038/Nature05671 |
0.317 |
|
| 2007 |
Kwon YS, Garcia-Bassets I, Hutt KR, Cheng CS, Jin M, Liu D, Benner C, Wang D, Ye Z, Bibikova M, Fan JB, Duan L, Glass CK, Rosenfeld MG, Fu XD. Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters. Proceedings of the National Academy of Sciences of the United States of America. 104: 4852-7. PMID 17360330 DOI: 10.1073/Pnas.0700715104 |
0.316 |
|
| 2007 |
Garcia-Bassets I, Kwon YS, Telese F, Prefontaine GG, Hutt KR, Cheng CS, Ju BG, Ohgi KA, Wang J, Escoubet-Lozach L, Rose DW, Glass CK, Fu XD, Rosenfeld MG. Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors. Cell. 128: 505-18. PMID 17289570 DOI: 10.1016/J.Cell.2006.12.038 |
0.324 |
|
| 2007 |
Ngo JC, Gullingsrud J, Giang K, Yeh MJ, Fu XD, Adams JA, McCammon JA, Ghosh G. SR protein kinase 1 is resilient to inactivation. Structure (London, England : 1993). 15: 123-33. PMID 17223538 DOI: 10.1016/J.Str.2006.11.011 |
0.383 |
|
| 2006 |
Li HR, Wang-Rodriguez J, Nair TM, Yeakley JM, Kwon YS, Bibikova M, Zheng C, Zhou L, Zhang K, Downs T, Fu XD, Fan JB. Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Research. 66: 4079-88. PMID 16618727 DOI: 10.1158/0008-5472.Can-05-4264 |
0.602 |
|
| 2006 |
Ding JH, Zhong XY, Hagopian JC, Cruz MM, Ghosh G, Feramisco J, Adams JA, Fu XD. Regulated cellular partitioning of SR protein-specific kinases in mammalian cells. Molecular Biology of the Cell. 17: 876-85. PMID 16319169 DOI: 10.1091/Mbc.E05-10-0963 |
0.792 |
|
| 2005 |
Xu X, Fu XD. Conditional knockout mice to study alternative splicing in vivo. Methods (San Diego, Calif.). 37: 387-92. PMID 16314268 DOI: 10.1016/J.Ymeth.2005.07.019 |
0.535 |
|
| 2005 |
Lin S, Xiao R, Sun P, Xu X, Fu XD. Dephosphorylation-dependent sorting of SR splicing factors during mRNP maturation. Molecular Cell. 20: 413-25. PMID 16285923 DOI: 10.1016/J.Molcel.2005.09.015 |
0.731 |
|
| 2005 |
Zheng CL, Fu XD, Gribskov M. Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse. Rna (New York, N.Y.). 11: 1777-87. PMID 16251388 DOI: 10.1261/Rna.2660805 |
0.603 |
|
| 2005 |
Zheng CL, Kwon YS, Li HR, Zhang K, Coutinho-Mansfield G, Yang C, Nair TM, Gribskov M, Fu XD. MAASE: an alternative splicing database designed for supporting splicing microarray applications. Rna (New York, N.Y.). 11: 1767-76. PMID 16251387 DOI: 10.1261/Rna.2650905 |
0.589 |
|
| 2005 |
Velazquez-Dones A, Hagopian JC, Ma CT, Zhong XY, Zhou H, Ghosh G, Fu XD, Adams JA. Mass spectrometric and kinetic analysis of ASF/SF2 phosphorylation by SRPK1 and Clk/Sty. The Journal of Biological Chemistry. 280: 41761-8. PMID 16223727 DOI: 10.1074/Jbc.M504156200 |
0.797 |
|
| 2005 |
Ngo JC, Chakrabarti S, Ding JH, Velazquez-Dones A, Nolen B, Aubol BE, Adams JA, Fu XD, Ghosh G. Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2. Molecular Cell. 20: 77-89. PMID 16209947 DOI: 10.1016/J.Molcel.2005.08.025 |
0.463 |
|
| 2005 |
Zheng Y, Fu XD, Ou JH. Suppression of hepatitis B virus replication by SRPK1 and SRPK2 via a pathway independent of the phosphorylation of the viral core protein. Virology. 342: 150-8. PMID 16122776 DOI: 10.1016/J.Virol.2005.07.030 |
0.398 |
|
| 2005 |
Xu X, Yang D, Ding JH, Wang W, Chu PH, Dalton ND, Wang HY, Bermingham JR, Ye Z, Liu F, Rosenfeld MG, Manley JL, Ross J, Chen J, Xiao RP, ... ... Fu XD, et al. ASF/SF2-regulated CaMKIIdelta alternative splicing temporally reprograms excitation-contraction coupling in cardiac muscle. Cell. 120: 59-72. PMID 15652482 DOI: 10.1016/J.Cell.2004.11.036 |
0.624 |
|
| 2004 |
Fu XD. Towards a splicing code. Cell. 119: 736-8. PMID 15607969 DOI: 10.1016/J.Cell.2004.11.039 |
0.331 |
|
| 2004 |
Zheng CL, Nair TM, Gribskov M, Kwon YS, Li HR, Fu XD. A database designed to computationally aid an experimental approach to alternative splicing. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 78-88. PMID 14992494 |
0.516 |
|
| 2004 |
Ding JH, Xu X, Yang D, Chu PH, Dalton ND, Ye Z, Yeakley JM, Cheng H, Xiao RP, Ross J, Chen J, Fu XD. Dilated cardiomyopathy caused by tissue-specific ablation of SC35 in the heart. The Embo Journal. 23: 885-96. PMID 14963485 DOI: 10.1038/Sj.Emboj.7600054 |
0.502 |
|
| 2003 |
Aubol BE, Chakrabarti S, Ngo J, Shaffer J, Nolen B, Fu XD, Ghosh G, Adams JA. Processive phosphorylation of alternative splicing factor/splicing factor 2. Proceedings of the National Academy of Sciences of the United States of America. 100: 12601-6. PMID 14555757 DOI: 10.1073/Pnas.1635129100 |
0.477 |
|
| 2003 |
Yun CY, Velazquez-Dones AL, Lyman SK, Fu XD. Phosphorylation-dependent and -independent nuclear import of RS domain-containing splicing factors and regulators. The Journal of Biological Chemistry. 278: 18050-5. PMID 12637531 DOI: 10.1074/Jbc.M211714200 |
0.772 |
|
| 2002 |
Yeakley JM, Fan JB, Doucet D, Luo L, Wickham E, Ye Z, Chee MS, Fu XD. Profiling alternative splicing on fiber-optic arrays. Nature Biotechnology. 20: 353-8. PMID 11923840 DOI: 10.1038/Nbt0402-353 |
0.366 |
|
| 2001 |
Dagher SF, Fu X. Evidence for a role of Sky1p-mediated phosphorylation in 3' splice site recognition involving both Prp8 and Prp17/Slu4. Rna. 7: 1284-1297. PMID 11565750 DOI: 10.1017/S1355838201016077 |
0.453 |
|
| 2001 |
Wang HY, Xu X, Ding JH, Bermingham JR, Fu XD. SC35 plays a role in T cell development and alternative splicing of CD45. Molecular Cell. 7: 331-42. PMID 11239462 DOI: 10.1016/S1097-2765(01)00181-2 |
0.682 |
|
| 2001 |
Nolen B, Yun CY, Wong CF, McCammon JA, Fu XD, Ghosh G. The structure of Sky1p reveals a novel mechanism for constitutive activity. Nature Structural Biology. 8: 176-83. PMID 11175909 DOI: 10.1038/84178 |
0.723 |
|
| 2000 |
Yun CY, Fu XD. Conserved SR protein kinase functions in nuclear import and its action is counteracted by arginine methylation in Saccharomyces cerevisiae. The Journal of Cell Biology. 150: 707-18. PMID 10952997 DOI: 10.1083/Jcb.150.4.707 |
0.749 |
|
| 1999 |
Siebel CW, Feng L, Guthrie C, Fu XD. Conservation in budding yeast of a kinase specific for SR splicing factors. Proceedings of the National Academy of Sciences of the United States of America. 96: 5440-5. PMID 10318902 DOI: 10.1073/Pnas.96.10.5440 |
0.489 |
|
| 1999 |
Yeakley JM, Tronchère H, Olesen J, Dyck JA, Wang HY, Fu XD. Phosphorylation regulates in vivo interaction and molecular targeting of serine/arginine-rich pre-mRNA splicing factors. The Journal of Cell Biology. 145: 447-55. PMID 10225947 DOI: 10.1083/Jcb.145.3.447 |
0.661 |
|
| 1999 |
Wang HY, Arden KC, Bermingham JR, Viars CS, Lin W, Boyer AD, Fu XD. Localization of serine kinases, SRPK1 (SFRSK1) and SRPK2 (SFRSK2), specific for the SR family of splicing factors in mouse and human chromosomes. Genomics. 57: 310-5. PMID 10198174 DOI: 10.1006/Geno.1999.5770 |
0.525 |
|
| 1998 |
Bouck J, Fu XD, Skalka AM, Katz RA. Role of the constitutive splicing factors U2AF65 and SAP49 in suboptimal RNA splicing of novel retroviral mutants. The Journal of Biological Chemistry. 273: 15169-76. PMID 9614130 DOI: 10.1074/Jbc.273.24.15169 |
0.438 |
|
| 1998 |
Wang HY, Lin W, Dyck JA, Yeakley JM, Songyang Z, Cantley LC, Fu XD. SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells. The Journal of Cell Biology. 140: 737-50. PMID 9472028 DOI: 10.1083/Jcb.140.4.737 |
0.66 |
|
| 1997 |
Tronchre H, Wang J, Fu X. A protein related to splicing factor U2AF35 that interacts with U2AF65 and SR proteins in splicing of pre-mRNA. Nature. 388: 397-400. PMID 9237760 DOI: 10.1038/41137 |
0.48 |
|
| 1997 |
Chandler SD, Mayeda A, Yeakley JM, Krainer AR, Fu XD. RNA splicing specificity determined by the coordinated action of RNA recognition motifs in SR proteins. Proceedings of the National Academy of Sciences of the United States of America. 94: 3596-601. PMID 9108022 DOI: 10.1073/Pnas.94.8.3596 |
0.668 |
|
| 1997 |
Fu X, Kamps MP. E2a-Pbx1 induces aberrant expression of tissue-specific and developmentally regulated genes when expressed in NIH 3T3 fibroblasts. Molecular and Cellular Biology. 17: 1503-12. PMID 9032278 DOI: 10.1128/Mcb.17.3.1503 |
0.372 |
|
| 1996 |
Tamburini M, Malatesta M, Zancanaro C, Martin TE, Fu XD, Vogel P, Fakan S. Dense granular bodies: a novel nucleoplasmic structure in hibernating dormice. Histochemistry and Cell Biology. 106: 581-6. PMID 8985746 DOI: 10.1007/Bf02473273 |
0.316 |
|
| 1996 |
Colwill K, Feng LL, Yeakley JM, Gish GD, Cáceres JF, Pawson T, Fu XD. SRPK1 and Clk/Sty protein kinases show distinct substrate specificities for serine/arginine-rich splicing factors. The Journal of Biological Chemistry. 271: 24569-75. PMID 8798720 DOI: 10.1074/Jbc.271.40.24569 |
0.459 |
|
| 1996 |
Yeakley JM, Morfin JP, Rosenfeld MG, Fu XD. A complex of nuclear proteins mediates SR protein binding to a purine-rich splicing enhancer. Proceedings of the National Academy of Sciences of the United States of America. 93: 7582-7. PMID 8755518 DOI: 10.1073/Pnas.93.15.7582 |
0.433 |
|
| 1995 |
Malatesta M, Zancanaro C, Tamburini M, Martin TE, Fu XD, Vogel P, Fagan S. Novel nuclear ribonucleoprotein structural components in the dormouse adrenal cortex during hibernation. Chromosoma. 104: 121-8. PMID 8585989 DOI: 10.1007/Bf00347694 |
0.324 |
|
| 1995 |
Bouck J, Fu XD, Skalka AM, Katz RA. Genetic selection for balanced retroviral splicing: novel regulation involving the second step can be mediated by transitions in the polypyrimidine tract. Molecular and Cellular Biology. 15: 2663-71. PMID 7739546 DOI: 10.1128/Mcb.15.5.2663 |
0.383 |
|
| 1994 |
Gui JF, Lane WS, Fu XD. A serine kinase regulates intracellular localization of splicing factors in the cell cycle. Nature. 369: 678-82. PMID 8208298 DOI: 10.1038/369678A0 |
0.464 |
|
| 1993 |
Fu XD. Specific commitment of different pre-mRNAs to splicing by single SR proteins Nature. 365: 82-85. PMID 8361546 DOI: 10.1038/365082A0 |
0.475 |
|
| 1993 |
Imai H, Chan EKL, Kiyosawa K, Fu X, Tan EM. Novel nuclear autoantigen with splicing factor motifs identified with antibody from hepatocellular carcinoma. Journal of Clinical Investigation. 92: 2419-2426. PMID 8227358 DOI: 10.1172/Jci116848 |
0.38 |
|
| 1992 |
Fu XD, Maniatis T. The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3' splice site Proceedings of the National Academy of Sciences of the United States of America. 89: 1725-1729. PMID 1531875 DOI: 10.1073/Pnas.89.5.1725 |
0.557 |
|
| 1992 |
Fu XD, Mayeda A, Maniatis T, Krainer AR. General splicing factors SF2 and SC35 have equivalent activities in vitro, and both affect alternative 5' and 3' splice site selection. Proceedings of the National Academy of Sciences of the United States of America. 89: 11224-8. PMID 1454802 DOI: 10.1073/Pnas.89.23.11224 |
0.701 |
|
| 1992 |
Fu XD, Maniatis T. Isolation of a complementary DNA that encodes the mammalian splicing factor SC35 Science. 256: 535-538. PMID 1373910 DOI: 10.1126/Science.1373910 |
0.59 |
|
| 1991 |
Fu XD, Katz RA, Skalka AM, Maniatis T. The role of branchpoint and 3'-exon sequences in the control of balanced splicing of avian retrovirus RNA. Genes & Development. 5: 211-20. PMID 1847346 DOI: 10.1101/Gad.5.2.211 |
0.552 |
|
| 1991 |
Spector DL, Fu XD, Maniatis T. Associations between distinct pre-mRNA splicing components and the cell nucleus Embo Journal. 10: 3467-3481. PMID 1833187 DOI: 10.1002/J.1460-2075.1991.Tb04911.X |
0.512 |
|
| 1990 |
Fu XD, Maniatis T. Factor required for mammalian spliceosome assembly is localized to discrete regions in the nucleus. Nature. 343: 437-41. PMID 2137203 DOI: 10.1038/343437A0 |
0.487 |
|
| 1989 |
Leis J, Phillips N, Fu X, Tuazon PT, Traugh JA. Phosphorylation of avian retrovirus matrix protein by Ca2+/phospholipid-dependent protein kinase. European Journal of Biochemistry / Febs. 179: 415-22. PMID 2537209 DOI: 10.1111/J.1432-1033.1989.Tb14569.X |
0.638 |
|
| 1988 |
Jentoft JE, Smith LM, Fu XD, Johnson M, Leis J. Conserved cysteine and histidine residues of the avian myeloblastosis virus nucleocapsid protein are essential for viral replication but are not "zinc-binding fingers". Proceedings of the National Academy of Sciences of the United States of America. 85: 7094-8. PMID 2845395 DOI: 10.1073/Pnas.85.19.7094 |
0.619 |
|
| 1988 |
Fu X, Katz RA, Skalka AM, Leis J. Site-directed mutagenesis of the avian retrovirus nucleocapsid protein, pp12. Mutation which affects RNA binding in vitro blocks viral replication Journal of Biological Chemistry. 263: 2140-2145. PMID 2828360 |
0.318 |
|
| 1986 |
Katz RA, Fu XD, Skalka AM, Leis J. Avian retrovirus nucleocapsid protein, pp12, produced in Escherichia coli has biochemical properties identical to unphosphorylated viral protein Gene. 50: 361-369. PMID 2438190 DOI: 10.1016/0378-1119(86)90340-9 |
0.637 |
|
| 1985 |
Fu X, Phillips N, Jentoft J, Tuazon PT, Traugh JA, Leis J. Site-specific phosphorylation of avian retrovirus nucleocapsid protein pp12 regulates binding to viral RNA. Evidence for different protein conformations. The Journal of Biological Chemistry. 260: 9941-7. PMID 2991270 |
0.363 |
|
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