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John SantaLucia - Publications

Affiliations: 
Wayne State University, Detroit, MI, United States 
Area:
Organic Chemistry, Biochemistry
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hoshika S, Leal NA, Kim MJ, Kim MS, Karalkar NB, Kim HJ, Bates AM, Watkins NE, SantaLucia HA, Meyer AJ, DasGupta S, Piccirilli JA, Ellington AD, SantaLucia J, Georgiadis MM, et al. Hachimoji DNA and RNA: A genetic system with eight building blocks. Science (New York, N.Y.). 363: 884-887. PMID 30792304 DOI: 10.1126/Science.Aat0971  0.441
2018 SantaLucia J. How much free energy is absorbed upon breaking DNA base pairs?: Comment on "DNA melting and energetics of the double helix" by Maxim Frank-Kamenetskii et al. Physics of Life Reviews. PMID 29526422 DOI: 10.1016/J.Plrev.2018.03.008  0.304
2017 Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Feng D, ... ... Santalucia J, et al. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. Rna (New York, N.Y.). PMID 28138060 DOI: 10.1261/Rna.060368.116  0.432
2014 Jiang J, Aduri R, Chow CS, SantaLucia J. Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Nucleic Acids Research. 42: 3971-81. PMID 24371282 DOI: 10.1093/Nar/Gkt1329  0.375
2014 Jiang J, Aduri R, Chow C, Santalucia J. Unmodified Helix 69 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr18975  0.327
2012 Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, ... ... Santalucia J, et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. Rna (New York, N.Y.). 18: 610-25. PMID 22361291 DOI: 10.1261/Rna.031054.111  0.418
2012 Sumita M, Jiang J, SantaLucia J, Chow CS. Comparison of solution conformations and stabilities of modified helix 69 rRNA analogs from bacteria and human. Biopolymers. 97: 94-106. PMID 21858779 DOI: 10.1002/Bip.21706  0.458
2011 Kazantsev AV, Rambo RP, Karimpour S, Santalucia J, Tainer JA, Pace NR. Solution structure of RNase P RNA. Rna (New York, N.Y.). 17: 1159-71. PMID 21531920 DOI: 10.1261/Rna.2563511  0.411
2011 Watkins NE, Kennelly WJ, Tsay MJ, Tuin A, Swenson L, Lee HR, Morosyuk S, Hicks DA, Santalucia J. Thermodynamic contributions of single internal rA·dA, rC·dC, rG·dG and rU·dT mismatches in RNA/DNA duplexes. Nucleic Acids Research. 39: 1894-902. PMID 21071398 DOI: 10.1093/Nar/Gkq905  0.456
2008 Desaulniers JP, Chang YC, Aduri R, Abeysirigunawardena SC, SantaLucia J, Chow CS. Pseudouridines in rRNA helix 69 play a role in loop stacking interactions. Organic & Biomolecular Chemistry. 6: 3892-5. PMID 18931791 DOI: 10.1039/B812731J  0.401
2008 Saraiya AA, Lamichhane TN, Chow CS, SantaLucia J, Cunningham PR. Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. Journal of Molecular Biology. 376: 645-57. PMID 18177894 DOI: 10.1016/J.Jmb.2007.11.102  0.398
2007 Aduri R, Psciuk BT, Saro P, Taniga H, Schlegel HB, SantaLucia J. AMBER Force Field Parameters for the Naturally Occurring Modified Nucleosides in RNA. Journal of Chemical Theory and Computation. 3: 1464-75. PMID 26633217 DOI: 10.1021/Ct600329W  0.416
2007 Bevilacqua PC, SantaLucia J. The biophysics of RNA. Acs Chemical Biology. 2: 440-4. PMID 17649965 DOI: 10.1021/Cb7001363  0.395
2005 Watkins NE, SantaLucia J. Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes. Nucleic Acids Research. 33: 6258-67. PMID 16264087 DOI: 10.1093/Nar/Gki918  0.393
2004 SantaLucia J, Hicks D. The thermodynamics of DNA structural motifs. Annual Review of Biophysics and Biomolecular Structure. 33: 415-40. PMID 15139820 DOI: 10.1146/Annurev.Biophys.32.110601.141800  0.384
2004 Jang SB, Baeyens K, Jeong MS, SantaLucia J, Turner D, Holbrook SR. Structures of two RNA octamers containing tandem G.A base pairs. Acta Crystallographica. Section D, Biological Crystallography. 60: 829-35. PMID 15103128 DOI: 10.1107/S0907444904003804  0.46
2002 Irani RJ, SantaLucia J. The synthesis of anti-fixed 3-methyl-3-deaza-2'-deoxyadenosine and other 3H-imidazo[4,5-c]pyridine analogs. Nucleosides, Nucleotides & Nucleic Acids. 21: 737-51. PMID 12537017 DOI: 10.1081/Ncn-120016477  0.337
2002 Chow CS, Cunningham PR, Lee K, Meroueh M, SantaLucia J, Varma S. Photoinduced cleavage by a rhodium complex at G.U mismatches and exposed guanines in large and small RNAs. Biochimie. 84: 859-68. PMID 12458078 DOI: 10.1016/S0300-9084(02)01403-7  0.415
2002 Biswas T, Clos LJ, SantaLucia J, Mitra S, Roy R. Binding of specific DNA base-pair mismatches by N-methylpurine-DNA glycosylase and its implication in initial damage recognition. Journal of Molecular Biology. 320: 503-13. PMID 12096906 DOI: 10.1016/S0022-2836(02)00519-3  0.346
2001 Morosyuk SV, SantaLucia J, Cunningham PR. Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. III. Functional analysis of the 690 loop Journal of Molecular Biology. 307: 213-228. PMID 11243815 DOI: 10.1006/Jmbi.2000.4432  0.386
2001 Morosyuk SV, Cunningham PR, SantaLucia J. Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure Journal of Molecular Biology. 307: 197-211. PMID 11243814 DOI: 10.1006/Jmbi.2000.4431  0.435
2000 Morosyuk SV, Lee K, SantaLucia J, Cunningham PR. Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA: Analysis of the stem nucleotides Journal of Molecular Biology. 300: 113-126. PMID 10864503 DOI: 10.1006/Jmbi.2000.3852  0.475
2000 Meroueh M, Grohar PJ, Qiu J, SantaLucia J, Scaringe SA, Chow CS. Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA. Nucleic Acids Research. 28: 2075-83. PMID 10773075 DOI: 10.1093/Nar/28.10.2075  0.472
2000 Bommarito S, Peyret N, SantaLucia J. Thermodynamic parameters for DNA sequences with dangling ends Nucleic Acids Research. 28: 1929-1934. PMID 10756193 DOI: 10.1093/Nar/28.9.1929  0.455
1999 Blake RD, Bizzaro JW, Blake JD, Day GR, Delcourt SG, Knowles J, Marx KA, SantaLucia J. Statistical mechanical simulation of polymeric DNA melting with MELTSIM. Bioinformatics (Oxford, England). 15: 370-5. PMID 10366657 DOI: 10.1093/Bioinformatics/15.5.370  0.335
1999 Peyret N, Seneviratne PA, Allawi HT, SantaLucia J. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry. 38: 3468-77. PMID 10090733 DOI: 10.1021/Bi9825091  0.43
1999 Irani RJ, SantaLucia J. The synthesis of 5-iodocytidine phosphoramidite for heavy atom derivatization of RNA Tetrahedron Letters. 40: 8961-8964. DOI: 10.1016/S0040-4039(99)01650-0  0.355
1998 Xia T, SantaLucia J, Burkard ME, Kierzek R, Schroeder SJ, Jiao X, Cox C, Turner DH. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 37: 14719-35. PMID 9778347 DOI: 10.1021/Bi9809425  0.426
1998 Allawi HT, SantaLucia J. NMR solution structure of a DNA dodecamer containing single G·T mismatches Nucleic Acids Research. 26: 4925-4934. PMID 9776755 DOI: 10.1093/Nar/26.21.4925  0.404
1998 Allawi HT, SantaLucia J. Nearest-neighbor thermodynamics of internal A·C mismatches in DNA: Sequence dependence and pH effects Biochemistry. 37: 9435-9444. PMID 9649326 DOI: 10.1021/Bi9803729  0.319
1998 Arghavani MB, SantaLucia J, Romano LJ. Effect of mismatched complementary strands and 5'-change in sequence context on the thermodynamics and structure of benzo[a]pyrene-modified oligonucleotides Biochemistry. 37: 8575-8583. PMID 9622509 DOI: 10.1021/Bi980237W  0.391
1998 Allawi HT, SantaLucia J. Thermodynamics of internal C·T mismatches in DNA Nucleic Acids Research. 26: 2694-2701. PMID 9592156 DOI: 10.1093/Nar/26.11.2694  0.411
1998 Allawi HT, SantaLucia J. Nearest neighbor thermodynamic parameters for internal G·A mismatches in DNA Biochemistry. 37: 2170-2179. PMID 9485363 DOI: 10.1021/Bi9724873  0.396
1997 SantaLucia J, Turner DH. Measuring the thermodynamics of RNA secondary structure formation. Biopolymers. 44: 309-19. PMID 9591481 DOI: 10.1002/(Sici)1097-0282(1997)44:3<309::Aid-Bip8>3.0.Co;2-Z  0.43
1997 Carter RJ, Baeyens KJ, SantaLucia J, Turner DH, Holbrook SR. The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. Nucleic Acids Research. 25: 4117-22. PMID 9321667 DOI: 10.1093/Nar/25.20.4117  0.452
1997 Allawi HT, Santalucia J. Thermodynamics and NMR of internal G·T mismatches in DNA Biochemistry. 36: 10581-10594. PMID 9265640 DOI: 10.1021/Bi962590C  0.431
1997 Lee K, Varma S, SantaLucia J, Cunningham PR. In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA Journal of Molecular Biology. 269: 732-743. PMID 9223637 DOI: 10.1006/Jmbi.1997.1092  0.411
1995 Santalucia J, Shen LX, Cai Z, Lewis H, Tinoco I. Synthesis and NMR of RNA with selective isotopic enrichment in the bases Nucleic Acids Research. 23: 4913-4921. PMID 8532537 DOI: 10.1093/Nar/23.23.4913  0.361
1993 SantaLucia J. Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics Biochemistry®. 12612-12623. PMID 8251479 DOI: 10.1021/bi00210a009  0.379
1993 Jaeger JA, Santalucia J, Tinoco I. Determination of RNA structure and thermodynamics Annual Review of Biochemistry. 62: 255-287. PMID 7688943 DOI: 10.1146/Annurev.Bi.62.070193.001351  0.323
1992 Santalucia J, Kierzek R, Turner DH. Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin Science. 256: 217-219. PMID 1373521 DOI: 10.1126/Science.1373521  0.395
1991 He L, Kierzek R, SantaLucia J, Walter AE, Turner DH. Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]. Biochemistry. 30: 11124-32. PMID 1718426 DOI: 10.1021/Bi00110A015  0.357
1991 SantaLucia J, Kierzek R, Turner DH. Stabilities of consecutive A·C, C·C, G·G, U·C, and U·U mismatches in RNA internal Loops: Evidence for stable hydrogen-bonded U·U and C·C+ pairs Biochemistry. 30: 8242-8251. PMID 1714301 DOI: 10.1021/Bi00247A021  0.36
1991 SantaLucia J, Kierzek R, Turner DH. Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops Journal of the American Chemical Society. 113: 4313-4322. DOI: 10.1021/Ja00011A039  0.38
1991 Santalucia J, Kierzek R, Turner DH. Functional Group Substitutions as Probes of Hydrogen Bonding between GA Mismatches in RNA Internal Loops Journal of the American Chemical Society. 113: 4313-4322.  0.33
1990 SantaLucia J, Kierzek R, Turner DH. Effects of GA mismatches on the structure and thermodynamics of RNA internal loops Biochemistry. 29: 8813-8819. PMID 2271557 DOI: 10.1021/Bi00489A044  0.362
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